Development and validation of a Xanthomonas axonopodis pv. citri DNA microarray platform (XACarray) generated from the shotgun libraries previously used in the sequencing of this bacterial genome

Background. From shotgun libraries used for the genomic sequencing of the phytopathogenic bacterium Xanthomonas axonopodis pv. citri (XAC), clones that were representative of the largest possible number of coding sequences (CDSs) were selected to create a DNA microarray platform on glass slides (XACarray). The creation of the XACarray allowed for the establishment of a tool that is capable of providing data for the analysis of global genome expression in this organism. Findings. The inserts from the selected clones were amplified by PCR with the universal oligonucleotide primers M13R and M13F. The obtained products were purified and fixed in duplicate on glass slides specific for use in DNA microarrays. The number of spots on the microarray totaled 6,144 and included 768 positive controls and 624 negative controls per slide. Validation of the platform was performed through hybridization of total DNA probes from XAC labeled with different fluorophores, Cy3 and Cy5. In this validation assay, 86% of all PCR products fixed on the glass slides were confirmed to present a hybridization signal greater than twice the standard deviation of the deviation of the global median signal-to-noise ration. Conclusions. Our validation of the XACArray platform using DNA-DNA hybridization revealed that it can be used to evaluate the expression of 2,365 individual CDSs from all major functional categories, which corresponds to 52.7% of the annotated CDSs of the XAC genome. As a proof of concept, we used this platform in a previously work to verify the absence of genomic regions that could not be detected by sequencing in related strains of Xanthomonas. © 2010 Moreira et al; licensee BioMed Central Ltd.

Níveis de cálcio e avaliação óssea e de ovos de avestruzes reprodutoras

Analyses of mineral density in tibias and femurs of breeder ostriches had been carried on six couples 5-7 years old. During 8 weeks, 3 couples had been fed with ration of reproduction (T1) and other 3 couples with ration of maintenance (T2). It was possible to verify that the egg production was not affected by the diets, as well as the quality of egg shells. However the quality of the bones was worse for the birds fed of T2.

Comparison of intestinal response of chicks from light and heavy eggs to posthatch fasting

The effects of posthatch fasting on villi height and number, crypt depth and number of globet cells in duodenum, jejunum and ileum of broiler chicks from heavy and light eggs were compared. The 2×3×3 factorial design (egg weight: light and heavy eggs; treatments: with water and feed, with water, without water and feed; treatment duration: 24, 48 and 72 h) was used. The villi presented higher size in chicks from heavy than from light eggs. The fasting resulted in lower villi in duodenum (at 48 h), jejunum and ileum (at 72 h). The villi number increased in duodenum and jejunum of chicks from light eggs and only in jejunum of chicks from heavy eggs, but the increase was more accented in chicks from light ones. The fasting reduced the globet cells number in jejunum. Water intake avoided the fasting effects on villi height but had no effect on villi number. Chicks from heavy eggs fed with water and ration presented deeper crypts in all regions of the small intestine. The duodenum and ileum crypt depth of the chicks from heavy eggs reduced when they were submitted to fasting and when they were fed only with water. The results showed that chicks from light eggs were more affected than chicks from heavy eggs. The water intake partially avoided the fasting effects. © Asian Network for Scientific Information, 2011.

Plasma suíno e ovo inteiro em rações de leitões sobre desempenho na fase inicial e efeito residual até a terminação

Were used 64 weaned pigs, distributed in eight treatments: ration with skim milk (SM), three rations with crescent levels of swine plasma (SP), three rations with whole egg (WE) and a ration with high inclusion of soybean meal (SB). Daily weight gain (DWG), daily feed intake (DFI) and feed conversion (FC) were evaluated. The animals that consumed ration SB have the mean of DWG higher that other treatments, and inferior FC, from 35 to 48 days of age. The crescent levels of SP promoted linear reduction in DWG, from 21 to 35, and from 35 to 48 days of age, in DFI from 48 to 138 days of age and linear increased in FC from 21 to 35 of age. Considering the weaned phase until finishing, initial rations can be formulated with SP and WE substituted partially the CP of skim milk in 25 and 45%, respectively.

Análise espermática de perdizes (Rhynchotus rufescens) criadas em cativeiro e suplementadas com selênio

Due to the commercial importance of the red-winged tinamou (Rhynchotus rufescens), for the past few years, the employment of reproductive biotechnologies has been attempted. Thirty animals were randomly assigned into two groups: control group (no selenium) and treatment group (supplemented with 0,2 a 0,8 mg selenium/ 1000 kg ration). Animals were allocated at the FCAV - UNESP/Jaboticabal (2007-2008). Semen collections were performed by digital manipulation and divided in pools of at least 150 μL. After the immediate evaluation of motility, vigour, concentration and morphology, an aliquot of 20 μL was diluted in 300 μL of physiologic solution in order to test acrosome and membrane integrities, which were performed by counting 200 cells for each test. Cells were evaluated as follows: 1) Intact acrosome: lilac acrosome; Non-intact acrosome: pink acrosome; 2) Live cells: non stained; Dead: stained. Data was statistically analysed using the SAS System for Windows. No differences were found between treatment and control groups for volume, motility, vigour, mean number of spermatozoa per animal, concentration, Intact acrosome, Intact membrane. The difference found on midpiece sperm defect (Se = 1,33 ± 0,53 and control = 3,78 ± 0,69, p = 0.0107) may be due to the damages caused by the selenium deficiency to the architecture of the midpiece, which compromises sperm mobility and fertilization capacity.

Artemia sp. na alimentação de larvas de jundiá (Rhamdia quelen)

A considerable problem in the catfish larvae rearing is related to the first feeding. This study aimed to determine the larvae growth and the survival of silver catfish submitted to feeding with Artemia sp. in different time periods. The study was conducted in the Aquaculture Laboratory of the Universidade Estadual do Oeste do Paraná, with four treatments and five replications, constituted by feeding with Artemia sp. in 5, 10, 15 and 20 days, and after each period of time, by its replacement by ration. We used 200 larvae distributed into 20 aquariums, soon after the eggs hatched. The larvae were fed 4 times a day until apparent satiation for 30 days. The Artemia sp. feeding for 15 days provided the best results on weight gain, final length and survival.

Frequência de arraçoamento para alevinos de carpa comum

The best frequency of feeding for development of common carp fingerlings Cyprinus carpio was determined. Four hundred fish (4.88 ± 1.41 g and 6.72 ± 0.70 cm) were used, distributed in 20 tanks of 250 L each in completely randomized design with four treatments and five replicates. The four feeding strategies adopted were: providing feed once (T1), twice (T2), three (T3) and four times daily (T4) at the same amount being fractionated as described. At the end of 45 days of experiment were carried out measurements of the final weight (FW), final length (FL), weight gain (WG), feed conversion (FC), specific growth rate (SGR) and survivor (SR). It was evaluated the chemical composition of fish carcass: moisture (MT), crude protein (CP), lipids (LP) and ash (AS) and hematological analyzes performed such as erythrocyte (ER), hemoglobin (HG) and hematocrit (HT). There were significant statistical differences (P<0.01) for FW, FL, WG and SGR. For FC and SR there were no statistical differences (P>0.01). For the chemical composition the moisture, lipids and ash showed significant statistical differences (P>0.01), except only for protein (P>0.01) The hematological composition was not influenced by the feed frequency, it was not observed significant statistical difference (P>0.01) of erythrocytes, hemoglobin and hematocrit among dietary treatments. For common carp fingerlings, the provision of ration four times daily provided better final weight, final length, weight gain and specific growth rate without causing changes in the composition and hematological parameters of the fish.

Uranium deposition in bones of wistar rats associated with skeleton development

Sixty female Wistar rats were submitted to a daily intake of ration doped with uranium from weaning to adulthood. Uranium in bone was quantified by the SSNTD (solid state nuclear track detection) technique, and bone mineral density (BMD) analysis performed. Uranium concentration as a function of age exhibited a sharp rise during the first week of the experiment and a drastic drop of 70% in the following weeks. Data interpretation indicates that uranium mimics calcium. Results from BMD suggest that radiation emitted by the incorporated Uranium could induce death of bone cells. © 2013 Elsevier Ltd.

Probiótico na alimentação do pacu (Piaractus mesopotamicus): avaliação hematológica, bioquímica, imunológica e desempenho produtivo

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Volumes de tanques-rede na produção da tilápia-do-nilo: estudo de caso

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Desempenho de alevinos de quatro linhagens da tilápia do Nilo (Oreochromis niloticus) e análise da variabilidade genética pelos marcadores RAPD

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Efeito de dietas e altura da coluna d’água na sobrevivência de larvas de Betta splendens e o aporte de nitrogênio e fósforo

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Influência de probióticos no desempenho produtivo e fisiológico de rã-touro Rana catesbeiana Shaw, 1802

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Determinação de resíduo hormonal na carcaça de tilápia do nilo (Oreochromis niloticus) após reversão sexual

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Efeito da densidade de estocagem na sobrevivência e crescimento do pampo (Trachinotus carolinus) em tanques-rede marinhos

Pós-graduação em Aquicultura - FCAV