Inexpensive solution for real-time video and image stitching

Image stitching is the process of joining several images to obtain a bigger view of a scene. It is used, for example, in tourism to transmit to the viewer the sensation of being in another place. I am presenting an inexpensive solution for automatic real time video and image stitching with two web cameras as the video/image sources. The proposed solution relies on the usage of several markers in the scene as reference points for the stitching algorithm. The implemented algorithm is divided in four main steps, the marker detection, camera pose determination (in reference to the markers), video/image size and 3d transformation, and image translation. Wii remote controllers are used to support several steps in the process. The built‐in IR camera provides clean marker detection, which facilitates the camera pose determination. The only restriction in the algorithm is that markers have to be in the field of view when capturing the scene. Several tests where made to evaluate the final algorithm. The algorithm is able to perform video stitching with a frame rate between 8 and 13 fps. The joining of the two videos/images is good with minor misalignments in objects at the same depth of the marker,misalignments in the background and foreground are bigger. The capture process is simple enough so anyone can perform a stitching with a very short explanation. Although real‐time video stitching can be achieved by this affordable approach, there are few shortcomings in current version. For example, contrast inconsistency along the stitching line could be reduced by applying a color correction algorithm to every source videos. In addition, the misalignments in stitched images due to camera lens distortion could be eased by optical correction algorithm. The work was developed in Apple’s Quartz Composer, a visual programming environment. A library of extended functions was developed using Xcode tools also from Apple.

Ecology and conservation of bottlenose dolphins in Madeira Archipelago, Portugal

This study aimed to provide an insight on the ecology of the bottlenose dolphin population in Madeira archipelago. To achieve this, population structure; group dynamics, site-fidelity, residency and movement patterns within and out of the study area; survival and abundance estimates and spatial and temporal distribution and habitat preferences related to physiographic parameters using data collected between 2001-2011, were investigated. Photo-identification data analysis revealed strong evidences that bottlenose dolphins seen in the archipelago of Madeira belong to an open population with regular recruitment of new animals to the area. This population exhibited a typical fission-fusion society, in which short-term acquaintances prevail, with only a few long-lasting associations. Photo-identification methods demonstrated that there is a large variability in residency pattern, with resident, transient and migrant individuals. Only a small number of dolphins were found to be resident (4.3%). Social network diagram as well as SLAR analysis supported the existence of a mixed population of residents, migrants and transients. Mark-recapture methods estimated a high survival rate, within the range of other long-lived cetacean species. The resident community is composed of app. 180 individuals. In addition, around 400 dolphins of different residency patterns were found to use the south area of Madeira Island. Spatial distribution indicated that bottlenose dolphins were regularly found in shallow and closer to shore areas, suggesting the existence of biological processes influenced by bathymetry. Moreover, temporal patterns revealed no strong seasonal fluctuation in the presence of bottlenose dolphins in Madeira archipelago waters. Bottlenose dolphins are listed under the Annex II of the EU habitats Directive that requires the designation of Special Areas of Conservation (SACs) for this species; as such, the knowledge gained through this work can be used by governmental authorities to the establishment and management of areas for the conservation of bottlenose dolphin in Madeira archipelago.

Sincronização de múltiplas câmaras e controlo de iluminação sobre uma plataforma FPGA

O objetivo deste projeto foi o de realizar a sincronização de pelo menos quatro câmaras individuais, ajustando dinamicamente o frame rate de operação de cada câmara, tendo por base a família de sensores de imagem CMOS NanEye da empresa Awaiba, numa plataforma FPGA com interface USB3. Durante o projeto analisou-se, com a assistência de um supervisor da Awaiba, o sistema core de captura de imagem existente, baseado em VHDL. Foi estudado e compreendido o princípio do ajuste dinâmico do frame rate das câmaras. Tendo sido então desenvolvido o módulo de controlo da câmara, em VHDL, e um algoritmo de ajuste dinâmico do frame rate, sendo este implementado junto com a plataforma de processamento e interface da FPGA. Foi criado um módulo para efetuar a monitorização da frequência de operação de cada câmara, medindo o período de cada linha numa frame, tendo por base um sinal de relógio de valor conhecido. A frequência é ajustada variando o nível de tensão aplicado ao sensor com base no erro entre o período da linha medido e o período pretendido. Para garantir o funcionamento conjunto de múltiplas câmaras em modo síncrono foi implementada uma interface Master-Slave entre estas. Paralelamente ao módulo anteriormente descrito, implementou-se um sistema de controlo automático de iluminação com base na análise de regiões de interesse em cada frame captada por uma câmara NanEye. A intensidade de corrente aplicada às fontes de iluminação acopladas à câmara é controlada dinamicamente com base no nível de saturação dos pixéis analisados em cada frame. Foram desenvolvidas e implementadas variantes do algoritmo de controlo e o seu desempenho foi avaliado em laboratório. Os resultados obtidos na prática evidenciam que a solução implementada cumpre os requisitos de controlo e ajuste da frequência de operação de múltiplas câmaras. Mostrou ser um método de controlo capaz de manter um erro de sincronização médio de 3,77 μs mesmo na presença de variações de temperatura de aproximadamente 50 °C. Foi também demonstrado que o sistema de controlo de iluminação é capaz de proporcionar uma experiência de visualização adequada, alcançando erros menores que 3% e uma velocidade de ajuste máxima inferior a 1 s.

Allergic asthma exhaled breath metabolome: a challenge for comprehensive two-dimensional gas chromatography

Allergic asthma represents an important public health issue, most common in the paediatric population, characterized by airway inflammation that may lead to changes in volatiles secreted via the lungs. Thus, exhaled breath has potential to be a matrix with relevant metabolomic information to characterize this disease. Progress in biochemistry, health sciences and related areas depends on instrumental advances, and a high throughput and sensitive equipment such as comprehensive two-dimensional gas chromatography–time of flight mass spectrometry (GC × GC–ToFMS) was considered. GC × GC–ToFMS application in the analysis of the exhaled breath of 32 children with allergic asthma, from which 10 had also allergic rhinitis, and 27 control children allowed the identification of several hundreds of compounds belonging to different chemical families. Multivariate analysis, using Partial Least Squares-Discriminant Analysis in tandem with Monte Carlo Cross Validation was performed to assess the predictive power and to help the interpretation of recovered compounds possibly linked to oxidative stress, inflammation processes or other cellular processes that may characterize asthma. The results suggest that the model is robust, considering the high classification rate, sensitivity, and specificity. A pattern of six compounds belonging to the alkanes characterized the asthmatic population: nonane, 2,2,4,6,6-pentamethylheptane, decane, 3,6-dimethyldecane, dodecane, and tetradecane. To explore future clinical applications, and considering the future role of molecular-based methodologies, a compound set was established to rapid access of information from exhaled breath, reducing the time of data processing, and thus, becoming more expedite method for the clinical purposes.