Wave exposure as a predictor of benthic habitat distribution on high energy temperate reefs

The new found ability to measure physical attributes of the marine environment at high resolution across broad spatial scales has driven the rapid evolution of benthic habitat mapping as a field in its own right. Improvement of the resolution and ecological validity of seafloor habitat distribution models has, for the most part, paralleled developments in new generations of acoustic survey tools such as multibeam echosounders. While sonar methods have been well demonstrated to provide useful proxies of the relatively static geophysical patterns that reflect distribution of benthic species and assemblages, the spatially and temporally variable influence of hydrodynamic energy on habitat distribution have been less well studied. Here we investigate the role of wave exposure on patterns of distribution of near-shore benthic habitats. A high resolution spectral wave model was developed for a 624 km2 site along Cape Otway, a major coastal feature of western Victoria, Australia. Comparison of habitat classifications implemented using the Random Forests algorithm established that significantly more accurate estimations of habitat distribution were obtained by including a fine-scale numerical wave model, extended to the seabed using linear wave theory, than by using depth and seafloor morphology information alone. Variable importance measures and map interpretation indicated that the spatial variation in wave-induced bottom orbital velocity was most influential in discriminating habitat classes containing the canopy forming kelp Ecklonia radiata, a foundation kelp species that affects biodiversity and ecological functioning on shallow reefs across temperate Australasia. We demonstrate that hydrodynamic models reflecting key environmental drivers on wave-exposed coastlines are important in accurately defining distributions of benthic habitats. This study highlights the suitability of exposure measures for predictive habitat modeling on wave-exposed coastlines and provides a basis for continuing work relating patterns of biological distribution to remotely-sensed patterns of the physical environment.

Environmental controls on spatial patterns in the long-term persistence of giant kelp in central California

As marine management measures increasingly protect static areas of the oceans, it is important to make sure protected areas capture and protect persistent populations. Rocky reefs in many temperate areas worldwide serve as habitat for canopy-forming macroalgae and these structure-forming species of kelps (order Laminariales) often serve as important habitat for a great diversity of species. Macrocystis pyrifera is the most common canopy-forming kelp species found along the coast of California, but the distribution and abundance of M. pyrifera varies in space and time. The purpose of this study is to determine what environmental parameters are correlated with and their relative contribution to the spatial and temporal persistence of M. pyrifera along the central coast of California and how well those environmental parameters can be used to predict areas where this species is more likely to persist. Nine environmental variables considered in this study included depth of the seafloor, structure of the rocky reef, proportion of rocky reef, size of kelp patch, biomass of kelp within a patch, distance from the edge of a kelp patch, sea surface temperature, wave orbital velocities, and population connectivity of individual kelp patches. Using a generalized linear mixed effects model (GLMM), the persistence of M. pyrifera was significantly associated with seven of the nine variables considered: depth, complexity of the rocky reef, proportion of rock, patch biomass, distance from the edge of a patch, population connectivity, and wave orbital velocities. These seven environmental variables were then used to predict the persistence of kelp across the central coast, and these predictions were compared to a reserved dataset of M. pyrifera persistence, which was not used in the creation of the GLMM. The environmental variables were shown to accurately predict the persistence of M. pyrifera within the central coast of California (r = 0.71, P < 0.001). Because persistence of giant kelp is important to the community structure of kelp forests, understanding those factors that support persistent populations of M. pyrifera will enable more effective management of these ecosystems.

High strain mechanical loading rapidly induces tendon apoptosis : an ex vivo rat tibialis anterior model

Background: The role of apoptosis, or programmed cell death, has only recently been explored in tendon.

Objective: To investigate the development of apoptosis after high strain loading of rat tendon.

Methods: The right tibialis anterior tendons of three rats were prepared for mechanical loading, and left tendons were prepared identically as non-loaded controls. Tendon was loaded with 20% strain for six hours using a 1 Hz longitudinal sine wave signal. The following were used to assess apoptosis: (a) a monoclonal mouse antibody (F7-26) to label single stranded DNA breaks; (b) a rabbit polyclonal antibody that specifically recognises the cleaved form of caspase-3.

Results: Light microscopy confirmed that the high strain protocol induced a stretch overload injury. Control tendons showed little or no staining with the F7-26 antibody, but the loaded tendons displayed numerous apoptotic cells. The percentage of apoptotic cells (20%) in the loaded tendon was significantly greater than in the control tendon (1%) (p = 0.000). The labelled cells colocalised with abnormal nuclear morphology, including nuclear fragmentation. The staining against cleaved caspase-3 was positive in loaded tendons only, and localised both to nucleus and cytoplasm.

Conclusion: This experiment extends knowledge of human tendon apoptosis by showing that apoptosis can occur in response to short term, high strain mechanical loading. This is the first report of mechanical loading of intact tendon causing excessive apoptosis.

Re-imagining the cultural brand : postmodernism and next wave

The traditional interpretation of a brand, and the means by which an organisation communicates its brand, might be considered a product of a modernist managerial paradigm, with its focus on consistency, control, and coherence (Brown 1995, 1999; Firat and Shultz 1997). With the emergence of postmodernism, this logic has been challenged by one of flexibility and openness, since consumers are no longer willing to commit or conform to any unified and consistent idea, system, or narrative. In order to explain this change in the management of brands, this paper will examine the Australian cultural brand, Next Wave, as a paradigmatic example. Next Wave offers an innovative brand management model founded on the interaction between the organisation and the content provider, i.e., the artist. Based on both aesthetic and conceptual experimentations, Next Wave is a dynamic brand in which shape and content are continually redefined in an interactive and mutual relationship between the artist and the organisation. Therefore, it can be argued that paradoxically, the organisation does not own its own brand. In fact, the ownership exists only from a legal point of view (as a trademark); the real artificer of the brand is the artist. Since it is not possessed nor controlled at all by the organisation, but is always subject to continuous evolutions and redefinitions, the Next Wave brand can be considered as a postmodern brand that is not strictly tied to marketing rules, but involves the target as an active participant in the brand creation process.

Guided wave propagation and spectral element method for debonding damage assessment in RC structures

A concrete–steel interface spectral element is developed to study the guided wave propagation along the steel rebar in the concrete. Scalar damage parameters characterizing changes in the interface (debonding damage) are incorporated into the formulation of the spectral finite element that is used for damage detection of reinforced concrete structures. Experimental tests are carried out on a reinforced concrete beam with embedded piezoelectric elements to verify the performance of the proposed model and algorithm. Parametric studies are performed to evaluate the effect of different damage scenarios on wave propagation in the reinforced concrete structures. Numerical simulations and experimental results show that the method is effective to model wave propagation along the steel rebar in concrete and promising to detect damage in the concrete–steel interface.

What decision rules might pink-footed geese use to depart on migration? An individual-based model

Decisions taken during migration can have a large effect on the fitness of birds. Migration must be accurately timed with food availability to allow efficient fueling but is also constrained by the optimal arrival date at the breeding site. The decision of when to leave a site can be driven by energetics (sufficient body stores to fuel flight), time-related cues (internal clock under photoperiodic control), or external cues (temperature, food resources). An individual based model (IBM) that allows a mechanistic description of a range of departure decision rules was applied to the spring migration of pink-footed geese (Anser brachyrhynchus) from wintering grounds in Denmark to breeding grounds on Svalbard via 2 Norwegian staging sites. By comparing predicted with observed departure dates, we tested 7 decision rules. The most accurate predictions were obtained from a decision rule based on a combination of cues including the amount of body stores, date, and plant phenology. Decision rules changed over the course of migration with the external cue decreasing in importance and the time-related cue increasing in importance for sites closer to breeding grounds. These results are in accordance with descriptions of goose migration, following the “green-wave”: Geese track the onset of plant growth as it moves northward in spring, with an uncoupling toward the end of the migration if time is running out. We demonstrate the potential of IBMs to study the possible mechanisms underlying stopover ecology in migratory birds and to serve as tools to predict consequences of environmental change.

Spectral element modelling of wave propagation with boundary and structural discontinuity reflections

Spectral element method is very efficient in modelling high-frequency stress wave propagation because it works in the frequency domain. It does not need to use very fine meshes in order to capture high frequency wave energy as the time domain methods do, such as finite element method. However, the conventional spectral element method requires a throw-off element to be added to the structural boundaries to act as a conduit for energy to transmit out of the system. This makes the method difficult to model wave reflection at boundaries. To overcome this limitation, imaginary spectral elements are proposed in this study, which are combined with the real structural elements to model wave reflections at structural boundaries. The efficiency and accuracy of this proposed approach is verified by comparing the numerical simulation results with measured results of one dimensional stress wave propagation in a steel bar. The method is also applied to model wave propagation in a steel bar with not only boundary reflection, but also reflections from single and multiple cracks. The reflection and transmission coefficients, which are obtained from the discrete spring model, are adopted to quantify the discontinuities. Experimental tests of wave propagation in a steel bar with one crack of different depths are also carried out. Numerical simulations and experimental results show that the proposed method is effective and reliable in modelling wave propagation in one-dimensional waveguides with reflections from boundary and structural discontinuities. The proposed method can be applied to effectively model stress wave propagation for structural damage detection.

Spectral element model updating for damage identification using clonal selection algorithm

A spectral element model updating procedure is presented to identify damage in a structure using Guided wave propagation results. Two damage spectral elements (DSE1 and DSE2) are developed to model the local (cracks in reinforcement bar) and global (debonding between reinforcement bar and concrete) damage in one-dimensional homogeneous and composite waveguide, respectively. Transfer matrix method is adopted to assemble the stiffness matrix of multiple spectral elements. In order to solve the inverse problem, clonal selection algorithm is used for the optimization calculations. Two displacement-based functions and two frequency-based functions are used as objective functions in this study. Numerical simulations of wave propagation in a bare steel bar and in a reinforcement bar without and with various assumed damage scenarios are carried out. Numerically simulated data are then used to identify local and global damage of the steel rebar and the concrete-steel interface using the proposed method. Results show that local damage is easy to be identified by using any considered objective function with the proposed method while only using the wavelet energy-based objective function gives reliable identification of global damage. The method is then extended to identify multiple damages in a structure. To further verify the proposed method, experiments of wave propagation in a rectangular steel bar before and after damage are conducted. The proposed method is used to update the structural model for damage identification. The results demonstrate the capability of the proposed method in identifying cracks in steel bars based on measured wave propagation data.

Riding the wave of open access : providing library research support for scholarly publishing literacy

Researchers are experiencing intense pressures to publish and increase research outputs. Recently many research funders have introduced policies and mandates related to open access, which have contributed to the increasing popularity of open access journals. Dubbed gold open access, open access journals offer researchers another publishing option. However, some publishers with questionable practices and journals of dubious quality have emerged exploiting the ‘author pays’ open access model and researchers' need to publish. Hence an ability to publish research outputs through the most appropriate outlet for a particular field is crucial for researchers in order to maximise the impact of their research. Notwithstanding the proliferation of open access journals, the literature indicates that some researchers may not have a full understanding of the operations, implications and issues around open access and other publishing issues. This understanding is known as scholarly publishing literacy. With knowledge of scholarly publishing and access to resources and tools, academic libraries and librarians are well-positioned to play an active role in providing support to researchers. This paper argues that scholarly publishing literacy should be treated as an extension of information literacy delivered through a broader research support framework. This paper presents a research librarian's perspective, and draws on literature and the author's practice to illustrate key points. Issues for further investigation are identified.

Efficient simulations of the aqueous bio-interface of graphitic nanostructures with a polarisable model.

To fully harness the enormous potential offered by interfaces between graphitic nanostructures and biomolecules, detailed connections between adsorbed conformations and adsorption behaviour are needed. To elucidate these links, a key approach, in partnership with experimental techniques, is molecular simulation. For this, a force-field (FF) that can appropriately capture the relevant physics and chemistry of these complex bio-interfaces, while allowing extensive conformational sampling, and also supporting inter-operability with known biological FFs, is a pivotal requirement. Here, we present and apply such a force-field, GRAPPA, designed to work with the CHARMM FF. GRAPPA is an efficiently implemented polarisable force-field, informed by extensive plane-wave DFT calculations using the revPBE-vdW-DF functional. GRAPPA adequately recovers the spatial and orientational structuring of the aqueous interface of graphene and carbon nanotubes, compared with more sophisticated approaches. We apply GRAPPA to determine the free energy of adsorption for a range of amino acids, identifying Trp, Tyr and Arg to have the strongest binding affinity and Asp to be a weak binder. The GRAPPA FF can be readily incorporated into mainstream simulation packages, and will enable large-scale polarisable biointerfacial simulations at graphitic interfaces, that will aid the development of biomolecule-mediated, solution-based graphene processing and self-assembly strategies.

A comparative study of guided wave propagation in timber poles with isotropic and transversely isotropic material models

Guided wave (GW) has been used for many years in non-destructive testing (NDT). There are various ways to generate the guided wave, including impact or impulse either manually or using devices. Although the method of impact or impulse is considered to be simple and practical in guided wave generation, it produces waves with broadband frequencies, which often make analysis much more difficult. The frequency bandwidth produced by manual impacts is usually at the low end, and is therefore justified when dealing with one dimensional wave propagation assumption in low strain integrity testing of cylindrical structures. Under such assumption if the velocity is known accurately, NDTs can produce reasonably good results for the condition assessment of the structure. However, for guided wave propagation in timber pole-like structures, it is rather complicated as timber is an orthotropic material and wave propagation in an orthotropic medium exhibits different characteristics from that in isotropic medium. It is possible to obtain solutions for guided wave propagation in orthotropic media for cylindrical structures, even though the orthotropic material greatly complicates GW propagation. In this paper, timber has been considered as a transversely isotropic (i.e. simplified orthotropic) material and a comparative study of GW propagation in a timber pole is conducted considering isotropic and transversely isotropic modelling. Phase velocity, group velocity and attenuation are the main parameters for this comparative study. Moreover, tractionfree situation and embedded geotechnical condition are also taken into consideration to evaluate the effect of boundary. Displacement profile, wave propagation pattern and power flow at particular frequency are utilized to determine different displacement components of longitudinal and flexural waves along and across the timber pole. Effect of temperature and moisture content (in terms of modulus of elasticity) in timber pole is also compared to show the variation in phase velocity.

Effect of elastic modulus and poisson's ratio on guided wave dispersion using transversely isotropic material modelling

Timber poles are commonly used for telecommunication and power distribution networks, wharves or jetties, piling or as a substructure of short span bridges. Most of the available techniques currently used for non-destructive testing (NDT) of timber structures are based on one-dimensional wave theory. If it is essential to detect small sized damage, it becomes necessary to consider guided wave (GW) propagation as the behaviour of different propagating modes cannot be represented by one-dimensional approximations. However, due to the orthotropic material properties of timber, the modelling of guided waves can be complex. No analytical solution can be found for plotting dispersion curves for orthotropic thick cylindrical waveguides even though very few literatures can be found on the theory of GW for anisotropic cylindrical waveguide. In addition, purely numerical approaches are available for solving these curves. In this paper, dispersion curves for orthotropic cylinders are computed using the scaled boundary finite element method (SBFEM) and compared with an isotropic material model to indicate the importance of considering timber as an anisotropic material. Moreover, some simplification is made on orthotropic behaviour of timber to make it transversely isotropic due to the fact that, analytical approaches for transversely isotropic cylinder are widely available in the literature. Also, the applicability of considering timber as a transversely isotropic material is discussed. As an orthotropic material, most material testing results of timber found in the literature include 9 elastic constants (three elastic moduli and six Poisson's ratios), hence it is essential to select the appropriate material properties for transversely isotropic material which includes only 5 elastic constants. Therefore, comparison between orthotropic and transversely isotropic material model is also presented in this article to reveal the effect of elastic moduli and Poisson's ratios on dispersion curves. Based on this study, some suggestions are proposed on selecting the parameters from an orthotropic model to transversely isotropic condition.