An MPI implementation supported by process migration and load balancing

This report describes an implementation of MPI-1 on the GENESIS cluster operating system and compares this implementation to a UNIX based MPI implementation. The changes that were made to the implementation are compared between the two, and the advantages of porting to GENESIS are detailed. This report demonstrates how GENESIS load balancing supported by process migration improves the execution performance of an MPI application. The significance of this report is in demonstrating how these services can enhance parallel programming tools to improve performance and how future parallel programming tool design could take advantage of these services.

Physiological stress responses in the warm-water fish matrinxã (Brycon amazonicus) subjected to a sudden cold shock

The present work evaluated several aspects of the generalized stress response [endocrine (cortisol), metabolic (glucose), hematologic (hematocrit and hemoglobin) and cellular (HSP70)] in the Amazonian warm-water fish matrinxã (Brycon amazonicus ) subjected to an acute cold shock. This species farming has been done in South America, and growth and feed conversion rates have been interesting. However, in subtropical areas of Brazil, where the water temperature can rapidly change, high rates of matrinxã mortality have been associated with abrupt decrease in the water temperature. Thus, we subjected matrinxã to a sudden cold shock by transferring the fish directly to tanks in which the water temperature was 10oC below the initial conditions (cold shock from 28ºC to 18oC). After 1h the fish were returned to the original tanks (28ºC). The handling associated with tank transfer was also imposed on control groups (not exposed to cold shock). While exposure to cold shock did not alter the measured physiological conditions within 1h, fish returned to the ambient condition (water at 28º C) significantly increased plasma cortisol and glucose levels. Exposure to cold shock and return to the warm water did not affect HSP70 levels. The increased plasma cortisol and glucose levels after returning the fish to warm water suggest that matrinxã requires cortisol and glucose for adaptation to increased temperature.

Sex reversal in Nile tilapia (Oreochromis niloticus Linnaeus) by androgen immersion

Two experiments were conducted to investigate the efficacy of three androgens applied through immersion treatments on the sex ratio of Nile tilapia (Oreochromis niloticus L.) fry. In experiment 1, 14 days post-hatching (DPH) larvae were exposed to a single immersion treatment in 17α-methyltestosterone (MT), 17α-methyldihydrotestosterone (MDHT) or 17α-ethynyltestosterone (ET) at 200, 600 and 1800 μg L⁻¹ over 4 h (130 larvae per treatment). In experiment 2, Nile tilapia larvae were exposed to the higher androgen concentration (1800 μg L⁻¹) applied as either a single immersion (14 DPH) or double immersion (10 and 14 DPH) over 4 h (125 larvae per treatment). Change in sex proportion within each experiment as well as between experiments was analysed by the chi-square test. In experiment 1, MT, MDHT and ET were equally effective in significantly increasing the proportion of males when applied at 1800 μg L⁻¹ (86.0%, 90.0% and 86.7% respectively). At 200 μg L⁻¹ none of the androgens altered sex ratio. At 600 μg L⁻¹, only MDHT slightly, but significantly skewed the sex ratio towards males (73.0%). In experiment 2, a single immersion treatment at 14 DPH (1800 μg L⁻¹) significantly increased the proportion of males, but at this time the response was significantly hormone dependent (MDHT, 100.0%; MT, 91.6%; ET, 76.9%). When compared with a single immersion, two-immersion treatments significantly increased the proportion of males in the MT-treated group (from 91.6% to 98.3%), decreased the proportion of males in the MDHT group (from 100.0% to 93.4%) and had no significant effect the ET-treated group (change from 76.9% to 82.5%). The overall comparison of the sex ratio among same treatments from different experiments (a single immersion in 1800 μg L⁻¹) was not significantly different.

Effects of clove oil on the stress response of matrinxã (Brycon cephalus) subjected to transport

Fish transport is one of the most stressful procedures in aquaculture facilities. The present work evaluated the stress response of matrinxã to transportation procedures, and the use of clove oil as an alternative to reduce the stress response to transport in matrinxã (Brycon cephalus). Clove oil solutions were tested in concentrations of 0, 1, 5 and 10 mg/L during matrinxã transportation in plastic bags, supplied with water and oxygen as the usual field procedures in Brazil. Clove oil reduced some of the physiological stress responses (plasma cortisol, glucose and ions) that we measured. The high energetic cost to matrinxã cope with the transport stress was clear by the decrease of liver glycogen after transport. Our results suggest that clove oil (5 mg/l) can mitigate the stress response in matrinxã subjected to transport.

Tecnica simples de marcacao externa de reprodutores de tilapia nilotica (Oreochromis niloticus)

With the goal of organizing a control program of Nile tilapia (Oreochromis niloticus) reproduction in laboratory, a tecnique with ceramic pearls held on dorsal musculature by transfixion with flexible sintetic string was developed. Sixty fishes with 12g average weight and 60 with 19g average weight were used. Marking was done on three positions: frontal (F), median (M), and caudal (C). Different combinations of three collored pearls were fixed on the right side (defining number), and were linked to only one pearl in the left side (defining sex), with a slack of about 1.5cm to prevent growth damage. The animals were individually identified and weigthed at 30, 60 and 130 days after surgery. Results showed that both F and M positions allowed normal growth and reproductive behavior, whereas the C position induced mortality and loss of marker in some specimens. The M position is recomended as the best, or the intermediate between F and M positions.

Tecnica simples para identificacao de femeas de tilapia nilotica (Oreochromis niloticus) realizando incubacao oral dos ovos

In aquaculture laboratories which work with Nile tilapia (Oreochromis niloticus) reproduction and use crystalline water, is frequently necessary to verify whether the females are incubating orally the eggs. The identification of the females when there is not know-how is difficult and slow, and in most cases is stressful and damage the eggs. This study describes a simple technique, using a mirror, to identify Nile tilapia incubating eggs orally in crystalline water. The results showed that is possible to identify the females which are incubating orally with 100% efficiency.

Validation of the aceto-carmine technique for evaluating phenotypic sex in Nile tilapia (Oreochromis niloticus) fry

In this study a method for evaluating phenotypic sex in Nile tilapia was validated. A technique that uses aceto-carmine squash mounts to stain the entire gonadal tissue for microscopic examination (Method 2- squash mounts) was compared with a technique based on traditional histology. Approximately 2600 Nile tilapia fry weighing and measuring, respectively, between 0.25-2.50g and 26-53mm, aged 35 to 60 days after hatch (DAH), were sexed using this methodology. In situ microscopic examination on the gonads was also performed. A reliable sexing using squash mount was possible with fish weighing more than 0.500g, 45-47 DAH. Results from microscopic observation using the aceto-carmine stain coincided 100% with the histological examination. Male gonadal tissue was characterized by the presence of cysts containing spermatogonia and spermatocytes, while females were easily identified by the presence of oocytes at the perinucleolar stage. The technique proved to be efficient not only in terms of evaluating sex proportion in fish but also because it allows immediate evaluation of gonadal sex and demands less time and labour.