Optimal feature subset selection for neuron spike sorting using the genetic algorithm

It is crucial for a neuron spike sorting algorithm to cluster data from different neurons efficiently. In this study, the search capability of the Genetic Algorithm (GA) is exploited for identifying the optimal feature subset for neuron spike sorting with a clustering algorithm. Two important objectives of the optimization process are considered: to reduce the number of features and increase the clustering performance. Specifically, we employ a binary GA with the silhouette evaluation criterion as the fitness function for neuron spike sorting using the Super-Paramagnetic Clustering (SPC) algorithm. The clustering results of SPC with and without the GA-based feature selector are evaluated using benchmark synthetic neuron spike data sets. The outcome indicates the usefulness of the GA in identifying a smaller feature set with improved clustering performance.

Spike sorting using hidden markov models

In this paper, hidden Markov models (HMM) is studied for spike sorting. We notice that HMM state sequences have capability to represent spikes precisely and concisely. We build a HMM for spikes, where HMM states respect spike significant shape variations. Four shape variations are introduced: silence, going up, going down and peak. They constitute every spike with an underlying probabilistic dependence that is modelled by HMM. Based on this representation, spikes sorting becomes a classification problem of compact HMM state sequences. In addition, we enhance the method by defining HMM on extracted Cepstrum features, which improves the accuracy of spike sorting. Simulation results demonstrate the effectiveness of the proposed method as well as the efficiency.

Spike sorting using locality preserving projection with gap statistics and landmark-based spectral clustering

Understanding neural functions requires knowledge from analysing electrophysiological data. The process of assigning spikes of a multichannel signal into clusters, called spike sorting, is one of the important problems in such analysis. There have been various automated spike sorting techniques with both advantages and disadvantages regarding accuracy and computational costs. Therefore, developing spike sorting methods that are highly accurate and computationally inexpensive is always a challenge in the biomedical engineering practice.

Hidden Markov model neurons classification based on Mel-frequency cepstral coefficients

In neuroscience, the extracellular actions potentials of neurons are the most important signals, which are called spikes. However, a single extracellular electrode can capture spikes from more than one neuron. Spike sorting is an important task to diagnose various neural activities. The more we can understand neurons the more we can cure more neural diseases. The process of sorting these spikes is typically made in some steps which are detection, feature extraction and clustering. In this paper we propose to use the Mel-frequency cepstral coefficients (MFCC) to extract spike features associated with Hidden Markov model (HMM) in the clustering step. Our results show that using MFCC features can differentiate between spikes more clearly than the other feature extraction methods, and also using HMM as a clustering algorithm also yields a better sorting accuracy.

Cepstrum based unsupervised spike classification

In this research, we study the effect of feature selection in the spike detection and sorting accuracy.We introduce a new feature representation for neural spikes from multichannel recordings. The features selection plays a significant role in analyzing the response of brain neurons. The more precise selection of features leads to a more accurate spike sorting, which can group spikes more precisely into clusters based on the similarity of spikes. Proper spike sorting will enable the association between spikes and neurons. Different with other threshold-based methods, the cepstrum of spike signals is employed in our method to select the candidates of spike features. To choose the best features among different candidates, the Kolmogorov-Smirnov (KS) test is utilized. Then, we rely on the superparamagnetic method to cluster the neural spikes based on KS features. Simulation results demonstrate that the proposed method not only achieve more accurate clustering results but also reduce computational burden, which implies that it can be applied into real-time spike analysis.

Classification of neural action potentials using mean shift clustering

 Understanding neural functions requires the observation of the activities of single neurons that are represented via electrophysiological data. Processing and understanding these data are challenging problems in biomedical engineering. A microelectrode commonly records the activity of multiple neurons. Spike sorting is a process of classifying every single action potential (spike) to a particular neuron. This paper proposes a combination between diffusion maps (DM) and mean shift clustering method for spike sorting. DM is utilized to extract spike features, which are highly capable of discriminating different spike shapes. Mean shift clustering provides an automatic unsupervised clustering, which takes extracted features from DM as inputs. Experimental results show a noticeable dominance of the features extracted by DM compared to those selected by wavelet transformation (WT). Accordingly, the proposed integrated method is significantly superior to the popular existing combination of WT and superparamagnetic clustering regarding spike sorting accuracy.

Statistical modelling of artificial neural network for sorting temporally synchronous spikes

Artificial neural network (ANN) models are able to predict future events based on current data. The usefulness of an ANN lies in the capacity of the model to learn and adjust the weights following previous errors during training. In this study, we carefully analyse the existing methods in neuronal spike sorting algorithms. The current methods use clustering as a basis to establish the ground truths, which requires tedious procedures pertaining to feature selection and evaluation of the selected features. Even so, the accuracy of clusters is still questionable. Here, we develop an ANN model to specially address the present drawbacks and major challenges in neuronal spike sorting. New enhancements are introduced into the conventional backpropagation ANN for determining the network weights, input nodes, target node, and error calculation. Coiflet modelling of noise is employed to enhance the spike shape features and overshadow noise. The ANN is used in conjunction with a special spiking event detection technique to prioritize the targets. The proposed enhancements are able to bolster the training concept, and on the whole, contributing to sorting neuronal spikes with close approximations.

Neural signal analysis by landmark-based spectral clustering with estimated number of clusters

Spike sorting plays an important role in analysing electrophysiological data and understanding neural functions. Developing spike sorting methods that are highly accurate and computationally inexpensive is always a challenge in the biomedical engineering practice. This paper proposes an automatic unsupervised spike sorting method using the landmark-based spectral clustering (LSC) method in connection with features extracted by the locality preserving projection (LPP) technique. Gap statistics is employed to evaluate the number of clusters before the LSC can be performed. Experimental results show that LPP spike features are more discriminative than those of the popular wavelet transformation (WT). Accordingly, the proposed method LPP-LSC demonstrates a significant dominance compared to the existing method that is the combination between WT feature extraction and the superparamagnetic clustering. LPP and LSC are both linear algorithms that help reduce computational burden and thus their combination can be applied into realtime spike analysis.

Adaptive spike detection for resilient data stream mining

Automated adversarial detection systems can fail when under attack by adversaries. As part of a resilient data stream mining system to reduce the possibility of such failure, adaptive spike detection is attribute ranking and selection without class-labels. The first part of adaptive spike detection requires weighing all attributes for spiky-ness to rank them. The second part involves filtering some attributes with extreme weights to choose the best ones for computing each example’s suspicion score. Within an identity crime detection domain, adaptive spike detection is validated on a few million real credit applications with adversarial activity. The results are F-measure curves on eleven experiments and relative weights discussion on the best experiment. The results reinforce adaptive spike detection’s effectiveness for class-label-free attribute ranking and selection.

An algorithm for logit network loading problem by topological sorting

This paper presents a topological sorting based algorithm for logit network loading problem to exclude all cycles by removing certain links from loops. The new algorithm calculates the link weights and flows according to topological order. It produces the theoretical results for networks without loops. Numerical examples show that the new algorithm can reduce errors introduced by the strict definition of 'reasonable route' in Dial's algorithm.

Mirror neuron dysfunction in autism spectrum disorders

Autism spectrum disorders (ASDs) are developmental conditions characterized by deficits in social interaction, verbal and nonverbal communication and obsessive/stereotyped patterns of behaviour. Although there is no reliable neurophysiological marker associated with ASDs, dysfunction of the parieto-frontal mirror neuron system has been suggested as a disturbance linked to the disorder. Mirror neurons (MNs) are visuomotor neurons which discharge both when performing and observing a goal directed action. Research suggests MNs may have a role in imitation, empathy, theory of mind and language. Although the research base is small, evidence from functional MRI, transcranial magnetic stimulation, and an electroencephalographic component called the mu rhythm suggests MNs are dysfunctional in subjects with ASD. These deficits are more pronounced when ASD subjects complete tasks with social relevance, or that are emotional in nature. Promising research has identified that interventions targeting MN related functions such as imitation can improve social functioning in ASDs. Boosting the function of MNs may improve the prognosis of ASDs, and contribute to diagnostic clarity.