Using fractal geometry to make rapid field measurements of riverbed topography at ecologically useful spatial scales

A method is described for making rapid in situ field measurements of riverbed topography over spatial scales of ≅1–10 m. This method uses rolling balls to make quick, accurate measurements of river-bed roughness at several spatial scales. Random sampling and replication generate multiple estimates of the fractal dimension (d) that can be used to test for significant differences in the complexity of riverbed architecture between habitat types and spatial scales.

Recruitment of the infaunal bivalve Soletellina Alba (Lamark,1818) (Bivalvia: Psammobiidae) in response to different sediment types and water depths within the intermittently open Hopkins River estuary

Studies examining recruitment processes for soft-sediment macroinvertebrate fauna in intermittent estuaries are rare and most studies of active habitat selection have been tested in the laboratory rather than the field. The present field study examined whether recruitment of the infaunal bivalve Soletellina alba was influenced by water depth and sediment particle size in the intermittent Hopkins River estuary, southern Australia. The number of recruits in sediment trays differed between water depths, but active habitat selection was not evident across treatments of varying sediment particle size. The use of sediments with varying particle sizes also provided an opportunity to identify potential discontinuities in body-size distributions of recruits associated with varying habitat architecture. The length (mm) of recruits was converted to the same scale used to express sediment particle size (i.e. phi units: phi = − log2 of sediment particle size). The size of recruits differed across water depths, but did not differ across treatments with fine (phi = 3) versus coarse (phi = 1) sediment, and no relationships were apparent between bivalve size and sediments consisting of varying particle size. These patterns of recruitment do not correspond with the distribution of adult S. alba within the Hopkins River estuary. Previous sampling has shown that abundances of juvenile and adult S. alba are variable across time, site and water depth, but are often greater at the deeper water depth (1.05 m below the Australian Height Datum). However, recruitment during the present study was greatest at the shallower water depth (0.05 m below AHD), and the apparent absence of active habitat selection suggests that the distribution of adults is unlikely to be attributable to differences in recruitment associated with sediments of varying particle size.

Spatial and temporal changes in abundance of the infaunal bivalve Soletellina alba (Lamark, 1818) during a time of drought in the seasonally-closed Hopkins River Estuary, Victoria Australia

The infaunal bivalve Soletellina alba is susceptible to mass mortalities during annual winter flooding in the Hopkins River Estuary, southern Australia. Periods of low salinity (≤1) are the likely cause of these mass mortality events, which can occur in seasonally-closed estuaries when high winter flows are sufficient to flush all salt water from the estuary. Core samples of S. alba were collected from two water depths across four times and at three sites near the mouth of the estuary. Minimal to zero abundances of large S. alba (>1 mm) were expected to be sampled, particularly at the shallower water depth, during a typical winter flood event. However, the present study occurred during a period of drought, which led to the absence of winter flooding. This absence of winter flooding prevented the occurrence of lethal salinities (i.e. ≤1) in the estuary during this period and a greater number of living S. alba adults were sampled. Abundances of juvenile and adult S. alba were still variable, even in the absence of winter flooding, and reflected an interaction between date, site and water depth. However, no mass mortalities of adults were observed during the drought conditions in contrast to what occurs during typical winter flood events and provides support for the hypothesis that winter flooding is responsible for past mass mortalities.

Ontogeny of oxygen stores and physiological diving capability in Australian sea lions

1.For air-breathing animals in aquatic environments, foraging behaviours are often constrained by physiological capability. The development of oxygen stores and the rate at which these stores are used determine juvenile diving and foraging potential.
2. We examined the ontogeny of dive physiology in the threatened Australian sea lion Neophoca cinerea. Australian sea lions exploit benthic habitats; adult females demonstrate high field metabolic rates (FMR), maximize time spent near the benthos, and regularly exceed their calculated aerobic dive limit (cADL). Given larger animals have disproportionately greater diving capabilities; we wanted to determine the extent physiological development constrained diving and foraging in young sea lions.
3. Ten different mother/pup pairs were measured at three developmental stages (6, 15 and 23 months) at Seal Bay Conservation Park, Kangaroo Island, South Australia. Hematocrit (Hct), haemoglobin (Hb) and plasma volume were analyzed to calculate blood O2 stores and myoglobin was measured to determine muscle O₂. Additionally, FMR's for nine of the juveniles were derived from doubly-labelled water measurements.
4. Australian sea lions have the slowest documented O₂ store development among diving mammals. Although weaning typically occurs by 17·6 months, 23-month juveniles had only developed 68% of adult blood O₂. Muscle O₂ was the slowest to develop and was 60% of adult values at 23 months.
5. We divided available O₂ stores (37·11 ± 1·49 mL O₂ kg−1) by at-sea FMR (15·78 ± 1·29 mL O₂ min−1 kg−1) to determine a cADL of 2·33 ± 0·24 min for juvenile Australian sea lions. Like adults, young sea lions regularly exceeded cADL's with 67·8 ± 2·8% of dives over theoretical limits and a mean dive duration to cADL ratio of 1·23 ± 0·10.
6. Both dive depth and duration appear impacted by the slow development of oxygen stores. For species that operate close to, or indeed above their estimated physiological maximum, the capacity to increase dive depth, duration or foraging effort would be limited. Due to reduced access to benthic habitat and restricted behavioural options, young benthic foragers, such as Australian sea lions, would be particularly vulnerable to resource limitation.

Dive behaviour, foraging locations and maternal-attendance patterns in Australian fur seals (Arctocephalus pusillus doriferus)

The dive behaviour, foraging locations, and colony-attendance patterns of female Australian fur seals (Arctocephalus pusillus doriferus) from Kanowna Island (39°10'S, 146°18'E) in Bass Strait, southeastern Australia, were determined throughout lactation during 1997–1999. Foraging-trip durations increased as lactation progressed, being shortest in summer (3.71 ± 0.24 days; mean ± 1 SE) and longest in winter (6.77 ± 0.57 days, P < 0.05), but maternal-attendance periods did not differ in duration (1.70 ± 0.10 days, P > 0.5). Individual mean attendance periods and trip durations were positively correlated (r² = 0.21, P < 0.005). Diving commenced shortly after seals left the colony (2.6 ± 0.4 h), was continuous for long periods (up to 36 h), occurred mostly during daylight hours, and lacked regular diel variation in depth. The majority of dives (78%) were typically U-shaped and reached depths corresponding to the prevailing depths in Bass Strait (65–85 m), indicating that these animals forage mostly on the benthos of the shallow continental shelf in this region. Such behaviour is unusual for fur seals but is reminiscent of that of some sea lion species. Mean dive durations varied between 2.0 and 3.7 min (maximum 8.9 min) and the theoretical aerobic dive limit (3.91–4.26 min) was exceeded on 17.3% of dives. Dive frequency (8.3 ± 0.6/h) and the proportion of time at sea spent diving (40.7 ± 2.1%) were weakly negatively related to the duration of the foraging trip (r²= 0.07, P < 0.004, and r² = 0.13, P < 0.0001, respectively). Data from at-sea locations showed that lactating females forage almost exclusively within Bass Strait during all seasons.

Ecology of meiofauna in a temperate mangrove ecosystem in south-eastern Australia

The meiofauna of a mangrove forest in the River Barwon estuary was studied by means of surveys and field experiments. Distinctive assemblages of meiofauna were described from the sediment and pneumatophores of the ecosystem. Fine resolution of phytal habitats was demonstrated, and particular assemblages of meiofauna were characteristic within habitat provided by dominant epibionts. Distribution of the meiofauna within leaf litter revealed high turnover rates of nematodes, and some factors controlling detrital assemblages were assessed. The vertical profile of sedimentary meiofauna was examined, and changes in abundance were related to the tychopelagic habit of many taxa at high tide. Dispersal within the water column was confirmed by pelagic trapping, and colonisation of mimic pneumatophores was investigated. The amount of algal cover, effects of grazing by gastropods, and rugosity of the colonised surface were shown to influence meiofauna colonisation of mimic pneumatophores. Establishment and persistence of patchy distributions of meiofauna at scales of less than 10 m in an intertidal environment was demonstrated, and it was concluded that this was due to the dynamic nature of assemblages rather than their integrity.

Impact of stresses imposed on macroinvertebrate communities in two suburban streams

The aim of the project was to determine factors which explain the distribution of macroinvertebrates in two Melbourne streams both drastically affected by urbanisation. A detailed description is given of Dandenong Creek, flowing through the south-eastern suburbs, and Darebin Creek, in the northern suburbs, emphasising stream features likely, or known, to influence the drift and benthic fauna. Faunal sampling was carried out in Dandenong Creek from June 1992 until July 1993, and in Darebin Creek from February 1995 until March 1998. Physicochemical parameters were also recorded. The collected data, together with previously existing data, were analysed using multivariate analyses: non-metric multi-dimensional scaling (NMDS); analysis of similarities (ANOSIM); matching biotic and abiotic variables using BIOENV, and principal component analysis (PCA). Various biotic and diversity indices were calculated in an attempt to identify the major factors responsible for the failure of the fauna to recover from previously more seriously degraded water quality. The contribution of drift to the colonisation potential in Dandenong Creek appeared to be impacted by retarding basins, underground barrel-draining and channelization. Results also indicated that increased conductivity adversely affected the fauna in the lower reaches of Dandenong Creek. It was concluded that in Darebin Creek, high nutrient levels, as well as other pollutants, had resulted in low macroinvertebrate diversity in both the drift and benthos. If, as this study suggests, faunal diversity is a valid measure of stream health, the following factors need to be addressed for catchment-wide, stream management: lack of riparian zone vegetation (increasing bank erosion and making the benthic habitat unstable, with greater temperature variability); control of stormwater runoff (flow variability, increased conductivity, nutrient levels, sediment loads, sewage effluent, industrial discharges and heavy metals), and to modify retarding basins to increase stream continuity.

Rearing juvenile Australian native percichthyid fish in fertilised earthen ponds

The post-larvae and fry of Australian native species, including those of species belonging to the family Percichthyidae, are routinely reared to a fingerling size (35-55 mm in length) in fertilised earthen fry rearing ponds. The juveniles of Murray cod (Maccullochella peelii peelii\ trout cod (Maccullochella macquariensis) and Macquarie perch (Macquaria australasicd) (Percichthyidae) are grown in fry rearing ponds at the Marine and Freshwater Resources Institute, Snobs Creek (Vie. Australia) for production of fingerlings for stock enhancement and aquaculture purposes. However, no detailed studies have been undertaken of the productivity of these ponds and factors that influence fish production. An ecologically based study was undertaken to increase the knowledge of pond ecology and dynamics, particularly in relation to the rearing of juvenile Murray cod, trout cod and Macquarie perch in ponds. Over nine consecutive seasons commencing in 1991, water chemistry, plankton, macrobenthos (2 seasons only) and fish were monitored and studied in five ponds located at Snobs Creek. A total of 80 pond fillings were undertaken during the study period. Additional data collected from another 24 pond fillings undertaken at Snobs Creek collected prior to this study were included in some analyses. Water chemistry parameters monitored in the ponds included, temperature, dissolved oxygen pH, ammonia, nitrite, nitrate, orthophosphate and alkalinity. Water chemistry varied spatially (within and between ponds) and temporally (diurnally, daily and seasonally). Liming of ponds increased the total alkalinity to levels that were considered to be suitable for enhancing plankton communities and fish production. Water quality within the ponds for the most part was suitable for the rearing of juvenile Murray cod, trout cod and Macquarie perch, as reflected in overall production (growth, survival and yield) from the ponds. However, at times some parameters reached levels which may have stressed fish and reduced growth and survival, in particular, low dissolved oxygen concentrations (minimum 1.18 mg/L), high temperatures (maximum 34°C), high pH (maximum 10.38) and high unionised ammonia (maximum 0.58 mg/L). Species belonging to 37 phytoplankton, 45 zooplankton and 17 chironomid taxa were identified from the ponds during the study. In addition, an extensive checklist of aquatic flora and fauna, recorded from aquaculture ponds in south-eastern Australia, was compiled. However, plankton and benthos samples were usually numerically dominated by a few species only. Rotifers (especially Filinia, Brachionus, Polyarthra, and Asplanchnd), cladocerans (Moina and Daphnid) and copepods (Mesocyclops and Boeckelld) were most abundant and common in the plankton, while chironomids (Chironomus, Polypedilum, and Prodadius) and oligochaetes were most common and abundant in the benthos. Both abundance and species composition of the plankton and macrobenthos varied spatially (within and between ponds) and temporally (diurnally, daily and seasonally). Chlorophyll a concentrations, which ranged from 1.8 to 184 \ig/L (mean 29.37 ng/L), initially peaked within two weeks of filling and fertilising the ponds. Zooplankton peaked in abundance 2-4 weeks after filling the ponds. The maximum zooplankton density recorded in the ponds was 6,621 ind./L (mean 721 ind./L). Typically, amongst the zooplankton, rotifers were first to develop high densities (2nd-3rd week after filling), followed by cladocerans (2nd-4th week after filling) then copepods (2nd-5th week after filling). Chironomid abundance on average peaked later (during the 5th week after filling). The maximum chironomid density recorded in the ponds was 27,470 ind./m2 (mean 4,379 ind./m2). Length-weight, age-weight and age-length relationships were determined for juvenile Murray cod, trout cod and Macquarie perch reared in ponds. These relationships were most similar for Murray cod and trout cod, which are more closely related phylogenetically and similar morphologically than Macquarie perch. Growth of fish was negatively correlated with both size at stocking and stocking biomass. Stocking density experiments showed that, at higher densities, growth offish was significantly reduced, but survival was not affected. The diets of juvenile Murray cod trout cod and Macquarie perch reared in fry ponds were similar. The cladocerans Moina and Daphnia, adult calanoid and cyclopoid copepods and the chironomids, Chironomus, Polypedilum and Procladius were the most commonly occurring and abundant prey. Selection for rotifers and copepod nauplii was strongly negative for all three species of fish. Size range of prey consumed was positively correlated with fish size for trout cod and Macquarie perch, but not for Murray cod. Diet composition changed as the fish grew. Early after stocking the fish into the ponds, Moina was generally the more common prey consumed, while in latter weeks, copepods and chironomids became more abundant and common in the diet. On a dry weight basis, chironomid larvae were the most important component in the diets of these fish species. Selective feeding by fish on larger planktonic species such as adult copepods and cladocerans, may have influenced the plankton community structure as proposed by the trophic cascade or top -down hypothesis. The proximate composition and energy content of Murray cod, trout cod and Macquarie perch, reared in the ponds did not vary significantly between the species, and few significant changes were observed as the fish grew. These results suggested that the nutrient requirements of these species might not vary over the size range of fish examined. Significant differences in the proximate composition of prey were observed between species, size of species and time of season. The energy content of prey (cladocerans, copepods and chironomids) on a pond basis, was closely related to the abundance of these taxa in the ponds. Data collected from all pond fillings during the present study, along with historical data from pond fillings undertaken prior to this study, were combined in a data matrix and analysed for interactions between pairs of parameters. In particular, interactions between selected water chemistry parameters, zooplankton and chironomid abundance indicators were analysed to identify key factors that influence fish production (growth, survival, condition and yield). Significant correlations were detected between fish production indicators and several water chemistry and biota (zooplankton and chironomids) parameters. However, these were not consistent across all three species of fish. These results indicated that the interactions between water chemistry, biota and fish were complex, and that combinations of these parameters, along with other factors not included in the present study, may influence fish production in these ponds. The present study, showed that more stringent monitoring of fry rearing ponds, especially water quality, zooplankton and benthos communities and fish, combined with an associated increase in understanding of the pond ecosystem, can lead to substantial improvements in pond productivity and associated fish production. In the present study this has resulted in a general increase in fish survival rates, which became less variable or more predictable in nature. The value of such knowledge can provide managers with a more predicative capacity to estimate production of ponds in support of stock enhancement programs and provision of juvenile for aquaculture grow-out.

Controls on body size during the Late Permian mass extinction event

This study examines the morphological responses of Late Permian brachiopods to environmental changes. Quantitative analysis of body size data from Permian–Triassic brachiopods has demonstrated significant, directional changes in body size before, during and after the Late Permian mass extinction event. Brachiopod size significantly reduced before and during the extinction interval, increased for a short time in more extinction-resistant taxa in the latter stages of extinction and then dramatically reduced again across the Permian ⁄ Triassic boundary. Relative abundances of trace elements and acritarchs demonstrate that the body size reductions which happened before, during and after extinction were driven by primary productivity collapse, whereas declining oxygen levels had less effect. An episode of size increase in two of the more extinction-resistant brachiopod species is unrelated to environmental change and possibly was the result of reduced interspecific competition for resources following the extinction of competitors. Based on the results of this study, predictions can be made for the possible responses of modern benthos to present-day environmental changes.

Estimating prey accessibility for waders : a problem still to be solved

Estimating the accessible prey fraction for short-billed waders, we used a new sampling device - the sediment- plane( Desholme t al. 1998) - to record prey density of the uppermost benthos communities in softbottom habitats. In contrast to "ordinary"core-samplers, the sediment plane allows a relatively quick sampling of the uppermost layers of the sediment and, thus, it should allow a more reliable estimate of the accessible benthos community especially of vertically mobile prey organisms such as polychaetes. To assess its usefulness, we compared samples collected with the sediment-plane that took only the uppermost 3cm of the sediment with samples taken with a core-sampler. These investigations showed significant differences between the two sampling methods. In comparison with the corresponding layer of the core samples, we found significantly higher numbers and a higher biomass for at least four polychaete species (e.g. Ragworm Nereis diversicolor) in the plane samples.Therefore, we recommend the use of the sediment-plane when studying the accessible fraction for foraging waders especially when studying short-billed species.

Invertebrate food sources for waterbirds provided by the reconstructed wetland of Nyirkai-Hany, northwestern Hungary

The Nyirkai-Hany wetland reconstruction area in northwestern Hungary is now designated as a Ramsar and a Natura 2000 site. It was created in 2001–2002 by the Fertő-Hanság National Park Directorate to restore a part of the formerly drained large wetland called Hanság and to offer waterbirds a suitable habitat for feeding and breeding. We focused on this aim of the restoration project and studied the temporal and spatial variation in abundance of birds and their invertebrate prey in this newly created wetland. From April 2007 until May 2008, we sampled plankton, nekton and benthos of different habitats monthly and monitored waterbirds weekly on the three different areas of the Nyirkai-Hany. During our investigations, 135 invertebrate and 53 waterbird species were recorded. Benthos and macrophyte decomposition accelerating guilds were the most abundant waterbird guilds—besides the dominant grazing importer material transporter guild, represented primarily by geese—in the Nyirkai-Hany. Zooplankton assemblages primarily consisted of small species not easily used as a food by planktivorous waterbirds. The low density of zoobenthic biomass and the small extent of shallow water mudflats probably accounted for the scarcity of the bioturbing guild group of birds. Nektonic biomass varied greatly among locations having different vegetation types, was greatest in the shallow water areas dominated by Typha, Carex and Phragmites species and lowest at offshore vegetation-free sites. Chironomids, mayflies and odonates were especially abundant and their biomass significantly correlated with several waterbird species, mainly belonging to the macrophyte decomposition accelerating guild (e.g. Anas platyrynchos, Fulica atra). This guild itself, which has increased in abundance in recent years, showed an exceptionally strong correlation with odonate abundance. These results indicate the growing importance of the Nyirkai-Hany wetland area as a foraging site for waterbirds.

Rigs-to-reefs: Will the deep sea benefit from artificial habitat?

As a peak in the global number of offshore oil rigs requiring decommissioning approaches, there is growing pressure for the implementation of a "rigs-to-reefs" program in the deep sea, whereby obsolete rigs are converted into artificial reefs. Such decommissioned rigs could enhance biological productivity, improve ecological connectivity, and facilitate conservation/restoration of deep-sea benthos (eg cold-water corals) by restricting access to fishing trawlers. Preliminary evidence indicates that decommissioned rigs in shallower waters can also help rebuild declining fish stocks. Conversely, potential negative impacts include physical damage to existing benthic habitats within the "drop zone", undesired changes in marine food webs, facilitation of the spread of invasive species, and release of contaminants as rigs corrode. We discuss key areas for future research and suggest alternatives to offset or minimize negative impacts. Overall, a rigs-to-reefs program may be a valid option for deep-sea benthic conservation. © The Ecological Society of America.

Late Permian marine ecosystem collapse began in deeper waters: Evidence from brachiopod diversity and body size changes

Analysis of Permian-Triassic brachiopod diversity and body size changes from different water depths spanning the continental shelf to basinal facies in South China provides insights into the process of environmental deterioration. Comparison of the temporal changes of brachiopod diversity between deepwater and shallow-water facies demonstrates that deepwater brachiopods disappeared earlier than shallow-water brachiopods. This indicates that high environmental stress commenced first in deepwater settings and later extended to shallow waters. This environmental stress is attributed to major volcanic eruptions, which first led to formation of a stratified ocean and a chemocline in the outer shelf and deeper water environments, causing the disappearance of deep marine benthos including brachiopods. The chemocline then rapidly migrated upward and extended to shallow waters, causing widespread mass extinction of shallow marine benthos. We predict that the spatial and temporal patterns of earlier onset of disappearance/extinction and ecological crisis in deeper water ecosystems will be recorded during other episodes of rapid global warming.

Integrated Sr isotope variations and global environmental changes through the late permian to early late triassic

New ⁸⁷Sr/⁸⁶Sr data based on 127 well-preserved and well-dated conodont samples from South China were measured using a new technique (LA-MC-ICPMS) based on single conodont albid crown analysis. These reveal a spectacular climb in seawater ⁸⁷Sr/⁸⁶Sr ratios during the Early Triassic that was the most rapid of the Phanerozoic. The rapid increase began in Bed 25 of the Meishan section (GSSP of the Permian-Triassic boundary, PTB), and coincided closely with the latest Permian extinction. Modeling results indicate that the accelerated rise of ⁸⁷Sr/⁸⁶Sr ratios can be ascribed to a rapid increase (>2.8×) of riverine flux of Sr caused by intensified weathering. This phenomenon could in turn be related to an intensification of warming-driven runoff and vegetation die-off. Continued rise of ⁸⁷Sr/⁸⁶Sr ratios in the Early Triassic indicates that continental weathering rates were enhanced >1.9 times compared to those of the Late Permian. Continental weathering rates began to decline in the middle-late Spathian, which may have played a role in the decrease of oceanic anoxia and recovery of marine benthos. The ⁸⁷Sr/⁸⁶Sr values decline gradually into the Middle Triassic to an equilibrium values around 1.2 times those of the Late Permian level, suggesting that vegetation coverage did not attain pre-extinction levels thereby allowing higher runoff.

Influence of intrinsic variation on foraging behaviour of adult female Australian fur seals

Phenotypic variation and individual experience can create behavioural and/or dietary variation within a population. This may reduce intra-specific competition, creating a buffer to environmental change. This study examined how intrinsic variation affects foraging behaviour of Australian fur seals. Foraging movements of 29 female Australian fur seals were recorded using FastLoc GPS and dive behaviour recorders. For each individual, body mass, flipper length and axis length were recorded, a tooth was sampled to determine age, and milk was collected for diet analysis. Clustering of fatty acid dietary analysis revealed 5 distinct groups in the population. Behaviour was described using 19 indices, which were then reduced to 7 principal components (>80% of the behavioural variation). Bayesian mixed effect models were developed to describe the relationship between these components and intrinsic variation. No association was found between diet and age or body shape; however, age had a negative relationship with component 1 (27% of variation). Older females spent less time at-sea and foraged nearer to the colony. Age had an effect on component 5 (7% of variation), which represented haul-outs and dive depth; older females made fewer visits to haul-out sites and dived deeper to the benthos. This suggests that as animals age they are able to utilise prior knowledge to exploit nearby foraging sites that younger animals are either unaware of, or have yet to gain the experience required to efficiently utilise. Mass had a negative effect on components representing the directedness of a foraging trip, suggesting heavier individuals were more likely to travel directly to a foraging site.