The development of 20 microsatellite loci for the Australian marine mollusk, Donax deltoides, through next generation DNA sequencing

 Next Generation DNA sequencing was used to develop a suite of microsatellite markers for the marine mollusk, Donax deltoides. A total of 20 polymorphic loci were identified and 12 characterized using 30 individuals from a single population (Venus Bay) in south eastern Australia. We observed moderate to high genetic variation across most loci (mean number of alleles per locus = 7.3; mean heterozygosity = 0.633) with only a single locus (Ddel32) displaying significant deviation from Hardy–Weinberg equilibrium. Marker independence was confirmed with tests for linkage disequilibrium, however two loci were found to be influenced by null alleles. The 10 viable markers characterized in the present study provide a valuable resource for future population genetic assessments and fisheries management of D. deltoides in Australia.

Isolation and development of oil producing microorganisms including Thraustochytrids from Indian and Australian marine biodiversity

 The author isolated and characterized several Thraustochytrid strains from Indian and Australian marine biodiversity and compared these strains for their application in biodiesel and DHA production depend on their fatty acid profile. Strain having best productivity was further optimized for the coproduction of DHA and biodiesel.

Studies on Australian hydroids : the genus Eudendrium and the fauna of the seagrass Amphibolis

An important Athecate genus, Eudendrium, and a group of species of the Thecata, the latter ecologically related by life on a common substrate, are reviewed. Eudendrium, hitherto poorly known in Australia, comprises 17 species, including 10 undescribed species with 71% Australian, and high provincial endemicity. Eudendrium may be a shelf genus avoiding turbulent oceanic waters. Species of Eudendrium are predominantly epizoic and some gregariously settling colonies may live for five years. Identification of sterile material is refined by using the cnidome in a key to classification. The species and population dynamics of hydroid epiphytes of the endemic southern Australian marine angiosperm Amphibolis were investigated with revision of historically vexatious taxa. In contrast with the northern hemisphere, no Athecata are associated with southern Australian seagrasses. Seventeen species from eight thecate families are associated with the two species of Amphibolis, including one undescribed species, H&lecium amphibolum, and one new record for Australia, Aglaophenia postdentata. The Lineolariidae is revised and a new genus, Millardaria, erected for a species from seagrass in Madagascar. The high endemicity (58%) and host-specificity of hydroids to Amphibolis is an evolutionary consequence of isolation of the seagrass dating from break-up of the Tethyan Sea. Hydroids occur throughout the year in the Amphibolis leaf canopy with a mean annual epiphytism of 44% on A. antarctica in the eastern continent and 86% in the western continent; epiphytism is 52% on A. griffithii in the western continent. Half of the eight important species are dominant epiphytes across the southern continent but the species and order of abundance varies regionally. Most are pioneer colonists with short, repetetive life-cycles lasting from weeks to a few months. Three species epiphytise the seagrass stems but only one is a leaf-canopy dominant. The canopy community comprises small, fast-growing species or dwarfed variants of species larger in other habitats: these ecomorphically constant forms are associated only with seagrass. Strategies for survival in the harsh Amphibolis environment include adnate colonies and gonothecae adnate or recumbent to the substrate, marked strengthening of the hydrorhiza, various hydrodynamic adaptations of the hydrotheca, early maturation and production of numerous small ova.

Testing the influence of survey method for building species distribution models of marine fishes

Accurate estimates of fish species occurrence are important to any species’ assessments and habitat suitability model. However, surveys of marine fishes are often biased by method. Surveys of marine fishes are often biased by method. Such bias could influence the interpretation of any habitat suitability model. With increasing emphasis on non-destructive sampling, underwater video techniques are commonly used without a thorough understanding of their advantages and disadvantages. This study compared data collected from baited remote underwater stereo-video systems and towed-video systems to provide occurrence data to develop habitat suitability models of nine temperate marine fishes. While numerous studies have compared modelling approaches in terms of model performance (i.e. via AUC or Kappa) the point of this paper was to highlight how very sensiblelooking, well-performing (based on AUC) models can provide different predictions of habitat suitability depending on which dataset is used.

Prioritizing climate change adaptation options for iconic marine species

© 2015, Springer Science+Business Media Dordrecht. Adaptation options in response to climate impact scenarios for marine mammals and seabirds were developed based on the IPCC vulnerability framework. Under this framework, vulnerability to the physical effects of climate change can be reduced by adaptation options that reduce exposure of individuals, reduce the sensitivity of individuals, and increase the adaptive capacity of individual/species to cope with climate change. We evaluated options in each vulnerability category with three screening tools collectively forming an approach we term sequential adaptation prioritization for species. These tools were designed to evaluate (i) technical aspects (cost-benefit-risk, CBR), (ii) institutional barriers, and (iii) potential social acceptability. The CBR tool identified which adaptation options were high cost and low benefit, might be discarded, and which were high benefit and low cost, might be rapidly implemented (depending on risk). Low cost and low benefit options might not be pursued, while those that are high cost, but high benefit deserve further attention. Even with technical merit, adaptation options can fail because of institutional problems with implementation. The second evaluation tool, based on the conceptual framework on barriers to effective climate adaptation, identifies where barriers may exist, and leads to strategies for overcoming them. Finally, adaptation options may not be acceptable to society at large, or resisted by vocal opponents or groups. The social acceptability tool identifies potentially contested options, which may be useful to managers charged with implementing adaptation options. Social acceptability, as scored by experts, differed from acceptability scored by the public, indicating the need to involve the public in assessing this aspect. Scores from each tool for each scenario can be combined to rank the suite of adaptation options. This approach provides useful tools to assist conservation managers in selecting from a wide range of adaptation strategies; the methodology is also applicable to other conservation sectors.

Multiple dispersal vectors drive range expansion in an invasive marine species

The establishment and subsequent spread of invasive species is widely recognised as one of the most threatening processes contributing to global biodiversity loss. This is especially true for marine and estuarine ecosystems, which have experienced significant increases in the number of invasive species with the increase in global maritime trade. Understanding the rate and mechanisms of range expansion is therefore of significant interest to ecologists and conservation managers alike. Using a combination of population genetic surveys, eDNA plankton sampling and hydrodynamic modelling we examined the patterns of introduction of the predatory Northern Pacific seastar (Asterias amurensis) and pathways of secondary spread within southeast Australia. Genetic surveys across the invasive range reveal some genetic divergence between the two main invasive regions and no evidence of ongoing gene flow; a pattern that is consistent with the establishment of the second invasive region via a human-mediated translocation event. In contrast hydrodynamic modelling combined with eDNA plankton sampling demonstrated that the establishment of range expansion populations within a region is consistent with natural larval dispersal and recruitment. Our results suggest that both anthropogenic and natural dispersal vectors have played an important role in the range expansion of this species in Australia. The multiple modes of spread combined with high levels of fecundity and a long larval duration in A. amurensis suggests it is likely to continue its range expansion and significantly impact Australian marine ecosystems.

Identifying knowledge gaps in seagrass research and management: An Australian perspective.

Seagrass species form important marine and estuarine habitats providing valuable ecosystem services and functions. Coastal zones that are increasingly impacted by anthropogenic development have experienced substantial declines in seagrass abundance around the world. Australia, which has some of the world's largest seagrass meadows and is home to over half of the known species, is not immune to these losses. In 1999 a review of seagrass ecosystems knowledge was conducted in Australia and strategic research priorities were developed to provide research direction for future studies and management. Subsequent rapid evolution of seagrass research and scientific methods has led to more than 70% of peer reviewed seagrass literature being produced since that time. A workshop was held as part of the Australian Marine Sciences Association conference in July 2015 in Geelong, Victoria, to update and redefine strategic priorities in seagrass research. Participants identified 40 research questions from 10 research fields (taxonomy and systematics, physiology, population biology, sediment biogeochemistry and microbiology, ecosystem function, faunal habitats, threats, rehabilitation and restoration, mapping and monitoring, management tools) as priorities for future research on Australian seagrasses. Progress in research will rely on advances in areas such as remote sensing, genomic tools, microsensors, computer modeling, and statistical analyses. A more interdisciplinary approach will be needed to facilitate greater understanding of the complex interactions among seagrasses and their environment.

The Gondwanan Carboniferous-Permian Boundary Revisited: New Data from Australia and Argentina

The identification and correlation of the Carboniferous-Permian (Gzhelian-Asselian) boundary within the sedimentary sequences of Gondwana has always been a topic of debate. Type latest Carboniferous and earliest Permian marine sequences are characterised by warm tropical faunas and come from the Uralian Region of Russia and Kazakhstan. Faunas include conodonts and fusulinid foraminiferids which are prime tools for correlation. Such faunal groups are absent from most Gondwanan sequences where reliance for correlations must be placed primarily on brachiopods, bivalve molluscs and palynology. The Western Australian marine sequences, with their contained ammonoids, provide a pivotal link for the dating and correlating of Early Permian Gondwanan sequences with those of the type regions and their palynostratigraphical record is essential for trans-Australian correlations and correlations elsewhere throughout Gondwanaland.

Effects of human activities on rocky shores of the Surf Coast Shire: scientific basis for management at the regional level

The Surf Coast Shire in regional Victoria contains some of the most spectacular coastline in Australia, running from Point Impossible in the east to just west of the resort town of Lorne. The Surf Coast Shire council is committed to ecologically sustainable tourism based on its coastal assets, including the important intertidal environments. The challenge for the Shire is to protect and enhance the biodiversity of its intertidal areas whilst allowing for their sustainable use as a critical component of the local economy. In order to do this the Council needed to identify the conservation values of intertidal areas within the shire and assess the impacts that current human use has on these values. The impacts of shellfish collecting on rocky shores were identified as an issue of particular concern. We have conducted a research project with the Shire to provide a scientific basis for management decisions. The principal aims of this project were to: (1) determine the patterns of human use of intertidal habitats; (2) measure the impacts of human usage on biological communities and species populations; and (3) to identify intertidal sites of regional conservation significance for the Surf Coast Shire. Surveys of human usage identified reef walking, looking in rock pools and fossicking as major uses of rocky shores within the Surf Coast. This poster reports the effects of this usage on gastropod populations of rocky shores within the Surf Coast Shire. A small proportion of visitors collected intertidal organisms. Shores were categorized as high or low use based on total numbers of people observed at each shore over the first year of the project. Mean size and catch per unit effort were compared for several gastropod species between high use and low use shores. The results presented here show that the populations of some gastropod species are of smaller mean size and less abundant on high use shores than on low use shores. There was also a noticeable difference in degree of effect detected between sandstone and mudstone shores. The implications of these results are briefly discussed in terms of management options available to the Shire.

Predicting changes to seascapes under future climate, with the Coorong as a case study

The marine and estuarine ecosystems of South Australia are likely to alter significantly in response to a changing climate, but also in response to managerial decisions we make. The allocation of fishing effort is an example of one such decision. We summarise some projections on a state-wide basis for how different components of these ecosystems may be expected to change. We anticipate that tropical elements will expand in range but cold-temperate communities will contract or disappear from South Australia. As a specific example, we have modelled the ecosystem states of the Coorong and the Murray Mouth. We combined biological and physico-chemical components of an ecosystem into co-occurring units (termed ecosystem states) with well-defined thresholds between them. Predictions were then made using time series of inputs from modelled water flows and other predictors. Using this model, we will discuss the likely implication of a range of climate change and management scenarios, highlighting the potential impact on the commercial fishing opportunities. Specifically we will discuss the potential sensitivity of the fishery to climate changes versus various management options. Understanding these possible future changes should allow the industry to adapt before climate change reduces the sustainability of the industry.