Broad-scale mapping of temporary wetlands in arid Australia

We describe a robust methodology to detect and estimate the size of temporary wetlands using AVHRR satellite data within large areas (106 km2) of the arid zone. The methodology uses spectral matching and exclusion of salt surfaces to discriminate between water and non-water surfaces. The status of 115 lakes was used to evaluate the methodology. A classification accuracy of 98% was achieved for wetlands >120 ha, with accuracy of area estimates varying with the size and shape of individual lakes. Spectral matching of AVHRR data has methodological and cost advantages over the use of higher spatial resolution data for understanding changes in the distribution of water at broad scales.

Fire, energy, and the ecology of reptiles in semi-arid Australia

‬Fire dependent ecosystems cover over half of the world's land surface. Understanding the factors that determine the distribution of fauna in these systems is essential to biodiversity conservation. This thesis explores the ecology of reptiles in a fire-prone region.

Artificial water points facilitate the spread of an invasive vertebrate in arid Australia

Summary: The spread of invasive species after their initial introduction is often facilitated by human actions. In some cases, invaders only become established in habitats where dominant native species have been displaced as a result of human actions or where humans inadvertently provide essential resources such as food, water or shelter. We investigated if dams that provide water for livestock have facilitated the cane toad's (Rhinella marina) invasion of a hot semi-arid landscape by providing toads with a resource subsidy and hence refuge from extreme heat and aridity. To determine the relationship between the presence of surface water and habitat occupancy by toads, we surveyed natural and artificial water features for cane toads during the annual dry season. We used radiotracking and acoustic tags to determine whether movement patterns and shelter use of cane toads were focussed around dams. To determine whether dams provide toads with refuge from extreme heat and aridity, we deployed plaster models with internal thermometers to estimate ambient temperatures and toad desiccation rates in shelter sites. To determine whether dams alleviate the stress experienced by toads, we measured plasma corticosterone levels of toads that sheltered in and away from dams. Toads were present in sites with standing water and absent from waterless sites. Most radiotracked toads sheltered within 1 m of water. Toad movements were focussed around water. Toads tracked with passive acoustic telemetry over a 6-month dry season were highly resident at dams. Plaster models placed in toad shelter sites away from the water lost 27% more mass and experienced higher temperatures than models placed near the water's edge. Toads that sheltered in terrestrial shelters exhibited higher plasma corticosterone levels compared to toads that sheltered near dams. Dams provide toads with refuge habitats where they are less at risk from overheating and dehydration. Synthesis and applications. Artificial water points can facilitate biological invasions in arid regions by providing a resource subsidy for water-dependent invasive species. Our study suggests that there is scope to control populations of water-dependent invasive vertebrates in arid regions by restricting their access to artificial water points.

Cost and feasibility of a barrier to halt the spread of invasive cane toads in arid Australia: incorporating expert knowledge into model-based decision-making

1. Active engagement with practitioners is a crucial component of model-based decision-making in conservation management; it can assist with data acquisition, improve models and help narrow the 'knowing-doing' gap.
2. We worked with practitioners of one of the worst invasive species in Australia, the cane toad Rhinella marina, to revise a model that estimates the effectiveness of landscape barriers to contain spread. The original model predicted that the invasion could be contained by managing artificial watering points on pastoral properties, but was initially met with scepticism by practitioners, in part due to a lack of engagement during model development.
3. We held a workshop with practitioners and experts in cane toad biology. Using structured decision-making, we elicited concerns about the original model, revised its structure, updated relevant input data, added an economic component and found the most cost-effective location for a barrier across a range of fixed budgets and management scenarios. We then conducted scenario analyses to test the sensitivity of management decisions to model revisions.
4. We found that toad spread could be contained for all of the scenarios tested. Our modelling suggests a barrier could cost $4·5 M (2015 AUD) over 50 years for the most likely landscape scenario. The incorporation of practitioner knowledge into the model was crucial. As well as improving engagement, when we incorporated practitioner concerns (particularly regarding the effects of irrigation and dwellings on toad spread), we found a different location for the optimal barrier compared to a previously published study (Tingley et al. 2013).
5. Synthesis and applications. Through engagement with practitioners, we turned an academic modelling exercise into a decision-support tool that integrated local information, and considered more realistic scenarios and constraints. Active engagement with practitioners led to productive revisions of a model that estimates the effectiveness of a landscape barrier to contain spread of the invasive cane toad R. marina. Benefits also include greater confidence in model predictions, improving our assessment of the cost and feasibility of containing the spread of toads.

Concordance in phylogeography and ecological niche modelling identify dispersal corridors for reptiles in arid Australia

Aim: Using the rock-specialist agamid Ctenophorus caudicinctus as a model, we test hypothesized biogeographical dispersal corridors for lizards in the Australian arid zone (across the western sand deserts), and assess how these dispersal routes have shaped phylogeographical structuring. Location: Arid and semi-arid Australia. Methods: We sequenced a c. 1400 bp fragment of mtDNA (ND2) for 134 individuals of C. caudicinctus as well as a subset of each of the mtDNA clades for five nuclear loci (BDNF, BACH1, GAPD, NTF3, and PRLR). We used phylogenetic methods to assess biogeographical patterns within C. caudicinctus, including relaxed molecular clock analyses to estimate divergence times. Ecological niche modelling (Maxent) was employed to estimate the current distribution of suitable climatic envelopes for each lineage. Results: Phylogenetic analyses identified two deeply divergent mtDNA clades within C. caudicinctus - an eastern and western clade - separated by the Western Australian sand deserts. However, divergences pre-date the Pleistocene sand deserts. Phylogenetic analyses of the nuclear DNA data sets generally support major mtDNA clades, suggesting past connections between the western C. c. caudicinctus populations in far eastern Pilbara (EP) and the lineages to the east of the sand deserts. Ecological niche modelling supports the continued suitability of climatic conditions between the Central Ranges and the far EP for C. c. graafi. Main conclusions: Estimates of lineage ages provide evidence of divergence between eastern and western clades during the Miocene with subsequent secondary contact during the Pliocene. Our results suggest that this secondary contact occurred via dispersal between the Central Ranges and the far EP, rather than the more southerly Giles Corridor. These events precede the origins of the western sand deserts and divergence patterns instead appear associated with Miocene and Pliocene climate change.

Terrestrial detritus supports the food webs in lowland intermittent streams of south-eastern Australia : a stable isotope study

1. Large amounts of terrestrial detritus enter many low-order forested streams, and this organic
material is often the major basal resource in the metazoan food webs of such systems. However,
despite their apparently low biomass, algae are the dominant food of organisms in a number of
aquatic communities which conventionally would have been presumed to be dependent on
allochthonous detritus, particularly those in the tropics and also in lowland intermittent streams
in arid Australia.
2. The dual stable isotope signatures (d13C and d15N) of potential primary food sources were
compared with the isotopic signatures of common aquatic animals in lowland intermittent
streams in south-eastern Australia, in both spring and summer, to determine whether
allochthonous detritus was an important nutritional resource in these systems. The isotopic
signatures of the major potential allochthonous plant food sources (Eucalyptus, Phalaris and
Juncus) overlapped, but were distinct from algae and the dominant macrophytes growing in the
study reaches. The isotopic signatures of biofilm were more spatially and temporally variable
than those of the other basal resources.
3. Despite allochthonous detritus having relatively high C : N ratios compared to other
potential basal resources, results from ISOSOURCE mixing model calculations demonstrated
that this detritus, and the associated biofilm, were the major energy sources assimilated by
macroinvertebrate primary consumers in both spring and summer. The importance of these
energy sources was also reflected in animals higher in the food web, including predatory
macroinvertebrates and fish. These resources were supplemented by autochthonous sources of
higher nutritional value (i.e. filamentous algae and macrophytes, which had relatively low
C : N ratios) when they became more prolific as the streams dried to disconnected pools in
summer.
4. The results highlight the importance of allochthonous detritus (particularly from Eucalyptus)
as a dependable energy source for benthic macroinvertebrates and fish in lowland intermittent
streams of south-eastern Australia. This contrasts with previous stable isotope studies
conducted in lowland intermittent streams in arid Australia, which have reported that the fauna
are primarily dependent on autochthonous algae.

Spatial and temporal drivers of small mammal distributions in a semi-arid environment : the role of rainfall, vegetation and life-history

A key task in ecology is to understand the drivers of animal distributions. In arid and semi-arid environments, this is challenging because animal populations show considerable spatial and temporal variation. An effective approach in such systems is to examine both broad-scale and long-term data. We used this approach to investigate the distribution of small mammal species in semi-arid ‘mallee’ vegetation in south-eastern Australia. First, we examined broad-scale data collected at 280 sites across the Murray Mallee region. We used generalized additive mixed models (GAMMs) to examine four hypotheses concerning factors that influence the distribution of individual mammal species at this scale: vegetation structure, floristic diversity, topography and recent rainfall. Second, we used long-term data from a single conservation reserve (surveyed from 1997 to 2012) to examine small mammal responses to rainfall over a period spanning a broad range of climatic conditions, including record high rainfall in 2011. Small mammal distributions were strongly associated with vegetation structure and rainfall patterns, but the relative importance of these drivers was species-specific. The distribution of the mallee ningaui Ningaui yvonneae, for example, was largely determined by the cover of hummock grass; whereas the occurrence of the western pygmy possum Cercartetus concinnus was most strongly associated with above-average rainfall. Further, the combination of both broad-scale and long-term data provided valuable insights. Bolam's mouse Pseudomys bolami was uncommon during the broad-scale survey, but long-term surveys showed that it responds positively to above-average rainfall. Conceptual models developed for small mammals in temperate and central arid Australia, respectively, were not, on their own, adequate to account for the distributional patterns of species in this semi-arid ecosystem. Species-specific variation in the relative importance of different drivers was more effectively explained by qualitative differences in life-history attributes among species.

Interspecific and geographic variation in the diets of sympatric carnivores: dingoes/wild dogs and red foxes in south-eastern Australia

Dingoes/wild dogs (Canis dingo/familiaris) and red foxes (Vulpes vulpes) are widespread carnivores in southern Australia and are controlled to reduce predation on domestic livestock and native fauna. We used the occurrence of food items in 5875 dingo/wild dog scats and 11,569 fox scats to evaluate interspecific and geographic differences in the diets of these species within nine regions of Victoria, south-eastern Australia. The nine regions encompass a wide variety of ecosystems. Diet overlap between dingoes/wild dogs and foxes varied among regions, from low to near complete overlap. The diet of foxes was broader than dingoes/wild dogs in all but three regions, with the former usually containing more insects, reptiles and plant material. By contrast, dingoes/wild dogs more regularly consumed larger mammals, supporting the hypothesis that niche partitioning occurs on the basis of mammalian prey size. The key mammalian food items for dingoes/wild dogs across all regions were black wallaby (Wallabia bicolor), brushtail possum species (Trichosurus spp.), common wombat (Vombatus ursinus), sambar deer (Rusa unicolor), cattle (Bos taurus) and European rabbit (Oryctolagus cuniculus). The key mammalian food items for foxes across all regions were European rabbit, sheep (Ovis aries) and house mouse (Mus musculus). Foxes consumed 6.1 times the number of individuals of threatened Critical Weight Range native mammal species than did dingoes/wild dogs. The occurrence of intraguild predation was asymmetrical; dingoes/wild dogs consumed greater biomass of the smaller fox. The substantial geographic variation in diet indicates that dingoes/wild dogs and foxes alter their diet in accordance with changing food availability. We provide checklists of taxa recorded in the diets of dingoes/wild dogs and foxes as a resource for managers and researchers wishing to understand the potential impacts of policy and management decisions on dingoes/wild dogs, foxes and the food resources they interact with.

Zooplankton dynamics from inundation to drying in a complex ephemeral floodplain-wetland

Ecological responses to wetting and drying in dryland river floodplain systems are often described in terms of “boom” and “bust”. We suggest that patterns in floodplain species abundances and assemblage structures will be closely linked to the changes in spatial habitat heterogeneity that accompany flooding and drying phases. This study examined the responses of zooplankton through a wetting and drying cycle in a complex floodplain-wetland system in semi-arid Australia, the Narran Lakes. We illustrate the complexity of the zooplankton “boom” and “bust” response. Total densities of zooplankton varied considerably over time and patterns were very dissimilar between sites with abundances varying from <30 animals/L to over 4000 animals/L. We detected different patterns in the proportion of variance in abundances of the broad taxonomic groups (rotifers, cladocerans, ostracods, calanoid copepods, cyclopoid copepods and nauplii) explained by time and space. Site explained the highest proportion of variation in cladoceran and ostracod abundances,whereas variance in calanoid abundances was explained predominantly by time since inundation. Variation in the abundances of the remaining groups was explained largely by the site by time interaction. Zooplankton assemblages were observed to diverge during drying with highest between-site dissimilarities in assemblage structure occurring during the later stages of drying. Such high spatial and temporal variability in zooplankton abundances and community composition could have important consequences for consumers such as fish and some wetland birds that utilize these ephemeral systems for feeding and breeding while they are inundated.

Top predators as biodiversity regulators : the dingo Canis lupus dingo as a case study

Top-order predators often have positive effects on biological diversity owing to their key functional roles in regulating trophic cascades and other ecological processes. Their loss has been identified as a major factor contributing to the decline of biodiversity in both aquatic and terrestrial systems. Consequently, restoring and maintaining the ecological function of top predators is a critical global imperative. Here we review studies of the ecological effects of the dingo Canis lupus dingo, Australia's largest land predator, using this as a case study to explore the influence of a top predator on biodiversity at a continental scale. The dingo was introduced to Australia by people at least 3500 years ago and has an ambiguous status owing to its brief history on the continent, its adverse impacts on livestock production and its role as an ecosystem architect. A large body of research now indicates that dingoes regulate ecological cascades, particularly in arid Australia, and that the removal of dingoes results in an increase in the abundances and impacts of herbivores and invasive mesopredators, most notably the red fox Vulpes vulpes. The loss of dingoes has been linked to widespread losses of small and medium-sized native mammals, the depletion of plant biomass due to the effects of irrupting herbivore populations and increased predation rates by red foxes. We outline a suite of conceptual models to describe the effects of dingoes on vertebrate populations across different Australian environments. Finally, we discuss key issues that require consideration or warrant research before the ecological effects of dingoes can be incorporated formally into biodiversity conservation programs.

On the edge of the desert : design and planning for Roxby Downs

The design and planning of settlements in arid Australia has long been wrought with difficulties because they are positioned in the extremes of environmental and social contexts. Historically many mining-related settlements in Western Australia (WA), South Australia (SA), Northern Territory (NT) and Queensland have struggled or failed in realising a quality design and plan, but also to sustain a robust and vibrant community who do not wish to escape to mainstream suburbia or simply operate as a fly-in fly-out employer commuter from this suburbia. Places like Mt Isa, Theodore, Moranbah, Broken Hill, Radium Hill, Leigh Creek, Roxby Downs, Paraburdoo, Shay Gap, Karratha are typical of these circumstances.

This paper reviews the design and planning origins of the villages at Olympic Dam, and critiques the future designs embedded in the Olympic Dam Expansion Environmental Impact Statement [EIS] (2009). These villages consist of Olympic dam village ( a fly-in fly-out dong-go containerised community accommodating some 500 workers) and Roxby Downs (a mixed Adelaide-template suburb with temporary village and caravan park insertions accommodation some 4,500 ‘permanent’ residents and some 200 fly-in fly-out ‘workers’). The scenario presented in the EIS is to demolish the former and establish a new village for some 10,000 workers, and expand Roxby Downs from 4,500 to near 20,000 although whether this later figure will occur is unclear but certainly the infrastructure and facilities have to be increased as well as increasing residential accommodation units).

Managing fire mosaics for small mammal conservation : a landscape perspective

1.Fire is a major driver of ecosystem structure and function worldwide. It is also widely used as a management tool to achieve conservation goals. A common objective is the maintenance of 'fire mosaics' comprising spatially heterogeneous patches of differing fire history. However, it is unclear what properties of fire mosaics most enhance conservation efforts. Here we focus on the spatial and temporal properties of fire-prone landscapes that influence the distribution of small mammals.

2.We surveyed small mammals in 28 landscapes (each 12·6km²) representing a range of fire histories in the Murray Mallee region (104 000km²) of semi-arid Australia. Generalised linear mixed models were used to examine the influence of five landscape properties on the capture rate of individual species and the species richness of native small mammals. We investigated the influence of the proportional extent of fire age-classes, the diversity of fire age-classes, the extent of the dominant vegetation type, rainfall history and biogeographic context.

3.Three of four study species were associated with the spatial extent of fire age-classes. Older vegetation was found to provide important habitat for native small mammals. Overall, however, rainfall history and biogeographic context were dominant influences: for example, the species richness of native mammals was positively associated with above-average rainfall. There was little evidence that the diversity of fire age-classes influenced either the capture rate of individual species or species richness.

4.Synthesis and applications. In fire-prone environments, habitat availability can change markedly over short time-scales. Sufficient habitat at a suitable seral stage within the landscape is a key requirement for species conservation. In mallee ecosystems, the retention of older vegetation is recommended to create more desirable fire mosaics for native small mammals. In addition to such spatial properties of mosaics that are amenable to manipulation, an understanding of how ecological processes affect the biota (such as variation in rainfall-driven productivity) is also essential for informed conservation management.