Short-term differences in animal assemblages in patches formed by loss and growth of habitat

Ecological theory predicts that habitat growth and loss will have different effects on community structure, even if they produce patches of the same size. Despite this, studies on the effects of patchiness are often performed without prior knowledge of the processes responsible for the patchiness. We manipulated artificial seagrass habitat in temperate Australia to test whether fish and crustacean assemblages differed between habitats that formed via habitat loss and habitat growth. Habitat loss treatments (originally 16 m2) and habitat growth treatments (originally 0 m2) were manipulated over 1 week until each reached a final patch size of 4 m2. At this size, each was compared through time (0-14 days after manipulation) with control patches (4 m2 throughout the experiment). Assemblages differed significantly among treatments at 0 and 1 day after manipulation, with differences between growth and loss treatments contributing to most of the dissimilarity. Immediately after the final manipulation, total abundance in habitat loss treatments was 46% and 62% higher than controls and habitat growth treatments, respectively, which suggests that animals crowded into patches after habitat loss. In contrast to terrestrial systems, crowding effects were brief (≤1 day), signifying high connectivity in marine systems. Growth treatments were no different to controls, despite the lower probability of animals encountering patches during the growth phase. Our study shows that habitat growth and loss can cause short-term differences in animal abundance and assemblage structure, even if they produce patches of the same size.

Fish responses to experimental fragmentation of seagrass habitat

Understanding the consequences of habitat fragmentation has come mostly from comparisons of patchy and continuous habitats. Because fragmentation is a process, it is most accurately studied by actively fragmenting large patches into multiple smaller patches. We fragmented artificial seagrass habitats and evaluated the impacts of fragmentation on fish abundance and species richness over time (1 day, 1 week, 1 month). Fish assemblages were compared among 4 treatments: control (single, continuous 9-m(2) patches); fragmented (single, continuous 9-m(2) patches fragmented to 4 discrete 1-m(2) patches); prefragmented/patchy (4 discrete 1-m(2) patches with the same arrangement as fragmented); and disturbance control (fragmented then immediately restored to continuous 9-m(2) patches). Patchy seagrass had lower species richness than actively fragmented seagrass (up to 39% fewer species after 1 week), but species richness in fragmented treatments was similar to controls. Total fish abundance did not vary among treatments and therefore was unaffected by fragmentation, patchiness, or disturbance caused during fragmentation. Patterns in species richness and abundance were consistent 1 day, 1 week, and 1 month after fragmentation. The expected decrease in fish abundance from reduced total seagrass area in fragmented and patchy seagrass appeared to be offset by greater fish density per unit area of seagrass. If fish prefer to live at edges, then the effects of seagrass habitat loss on fish abundance may have been offset by the increase (25%) in seagrass perimeter in fragmented and patchy treatments. Possibly there is some threshold of seagrass patch connectivity below which fish abundances cannot be maintained. The immediate responses of fish to experimental habitat fragmentation provided insights beyond those possible from comparisons of continuous and historically patchy habitat.

Integrating edge effects into studies of habitat fragmentation: a test using meiofauna in seagrass

Habitat fragmentation is thought to be an important process structuring landscapes in marine and estuarine environments, but effects on fauna are poorly understood, in part because of a focus on patchiness rather than fragmentation. Furthermore, despite concomitant increases in perimeter:area ratios with fragmentation, we have little understanding of how fauna change from patch edges to interiors during fragmentation. Densities of meiofauna were measured at different distances across the edges of four artificial seagrass treatments [continuous, fragmented, procedural control (to control for disturbance by fragmenting then restoring experimental plots), and patchy] 1 day, 1 week and 1 month after fragmentation. Experimental plots were established 1 week prior to fragmentation/disturbance. Samples were numerically dominated by harpacticoid copepods, densities of which were greater at the edge than 0.5 m into patches for continuous, procedural control and patchy treatments; densities were similar between the edge and 0.5 m in fragmented patches. For taxa that demonstrated edge effects, densities exhibited log-linear declines to 0.5 m into a patch with no differences observed between 0.5 m and 1 m into continuous treatments. In patchy treatments densities were similar at the internal and external edges for many taxa. The strong positive edge effect (higher densities at edge than interior) for taxa such as harpacticoid copepods implies some benefit of patchy landscapes. But the lack of edge effects during patch fragmentation itself demonstrates the importance of the mechanisms by which habitats become patchy.

Accounting for habitat and seafloor structure characteristics on southern rock lobster (Jasus edwardsii) assessment in a small marine reserve

Where to place marine protected areas (MPAs) and how much area they should cover are some of the most basic questions when designing MPAs. Based on the theory of island biogeography, larger reserves are likely to protect more species and individuals but smaller reserves have been shown to positively influence populations. In this study, we assess a localised population of the ecologically and economically important southern rock lobster (Jasus edwardsii) inside and outside a small reserve. We used standardised fishery assessment trapping methods to sample J. edwardsii populations inside a reserve and an adjacent area outside the reserve. The population characteristics of the captured individuals were compared inside and outside the reserve using t tests (male size, female size,number of reproductive females, number of individuals and biomass), and we found that there were significantly greater numbers and larger individuals and biomass inside the reserve. However, many assessments of MPA effectiveness are confounded by differences in habitat. To account for possible differences in habitat, we collected multibeam bathymetry data to allow us to characterise seafloor structure and video data to assign each sampling location to a biotope class based on macroalgae assemblages. Then, using generalised linear models (GLMs), we assessed differences in populations while accounting for habitat. The GLMs revealed that there was still a significant difference in populations inside the reserve despite habitat differences inside and outside the reserve. We demonstrate a methodological approach to provide a baseline data set to assess MPA effectiveness through time and measure how habitat may respond to indirect consequences of fishing or other human impacts at the species or ecosystem level. We also highlight some of the limitations in sampling design and data availability common in MPA studies and resulting implications for assessment.

Ranging patterns of François' langur in a fragmented habitat in fusui reserve, Guangxi province, China

Studies of animal ranging patterns and the influencing ecological factors are useful for understanding the relationship between aspects of animal behavior and ecology. In a year-long study, we investigated the ranging behavior and other determining factors for a group of Francois' langur in an isolated habitat of approximately 25.7 ha in Fusui Reserve, China. The Francois' langur home range was estimated to be 15.3 ha, covering ∼60% of their total habitat. The mean yearly day range length estimate was 802.5 m (SD =295.5 m). Langurs changed sleeping sites approximately every 3 days, resulting in increases in the amount of grid cells used and the range length. Food availability of flowers and fruits were seasonal, whereas both mature and immature leaves of most trees were perennial. Ranging behavior was not significantly correlated with the availability of mature leaves, immature leaves, buds, fruits (ripe and unripe fruits) or seeds (p =0.05). These results suggested that variations in food type availability were not factors influencing ranging behavior for this langur group, whereas sleeping site changes, and probably predation avoidance, are factors that influence the ranging patterns of the langur group.

Potential for water-resource infrastructure to act as refuge habitat

Permanent sources of natural water are expected to decline in Mediterranean-climate regions under future climate change. Therefore, stable water bodies that act as refuge habitats will become increasingly important to the maintenance of freshwater biodiversity. Man-made water bodies such as those associated with water-resource infrastructure could contribute to the available refuge habitat but little is known about fish, zooplankton and frog assemblages in such water bodies. We quantified the diversity and abundance of fish, zooplankton and frogs that reside within raw water storages and water reclamation plants and compared them to assemblages from nearby natural water bodies over a total of 19 water bodies.Overall, the faunal assemblages within the man-made water bodies showed similarities to the nearby natural water bodies with very few differences found among the three water body types. Diversity of available substrates and of submerged and emergent macrophytes were the habitat variables best correlated with diverse faunal assemblages. This study suggests that the faunal assemblages within raw water storages and water reclamation plants resemble those found within nearby natural water bodies and that there is therefore potential for water-resource infrastructure to act as an important refuge habitat during drought. Furthermore, small changes in the management of these storages to maximise habitat diversity could increase the value of the refuge, complementing their role in water-resource delivery.

Individual differences in activity and habitat selection of juvenile queen conch evaluated using acceleration biologgers

Fine-scale differences in behaviour and habitat use have important ecological implications, but have rarely been examined in marine gastropods. We used tri-axial accelerometer loggers to estimate activity levels and movement patterns of the juvenile queen conch Lobatus gigas (n = 11) in 2 habitat types in Eleuthera, The Bahamas. In 2 manipulations in nearshore areas, queen conchs were equipped with accelerometers and released in adjacent coral rubble or seagrass habitats. Queen conchs were located approximately every 6 h during daylight by snorkeling, to measure individual differences in linear distance moved, and after 24 h they were relocated to an alternate habitat (24 h in each habitat). We found significant inter-individual variability in activity levels, but more consistent levels of activity between the 2 habitat types within individual queen conchs. Four (36%) of the individuals placed in seagrass moved back to the adjacent coral rubble habitat, suggesting selectivity for coral rubble. Individuals showed variable behavioural responses when relocated to the less preferable seagrass habitat, which may be related to differing stress-coping styles. Our results suggest that behavioural variability between individuals may be an important factor driving movement and habitat use in queen conch and, potentially, their susceptibility to human stressors. This study provides evidence of diverse behavioural (activity) patterns and habitat selectivity in a marine gastropod and highlights the utility of accelero meter biologgers for continuously monitoring animal behaviour in the wild.

Modelling the benefits of habitat restoration in socio-ecological systems

Decisions affecting the management of natural resources in agricultural landscapes are influenced by both social and ecological factors. Models that integrate these factors are likely to better predict the outcomes of natural resource management decisions compared to those that do not take these factors into account. We demonstrate how Bayesian Networks can be used to integrate ecological and social data and expert opinion to model the cost-effectiveness of revegetation activities for restoring biodiversity in agricultural landscapes. We demonstrate our approach with a case-study in grassy woodlands of south-eastern Australia. In our case-study, cost-effectiveness is defined as the improvement in native reptile and beetle species richness achieved per dollar spent on a restoration action. Socio-ecological models predict that weed control, the planting of trees and shrubs, the addition of litter and timber, and the addition of rocks are likely to be the most cost-effective actions for improving reptile and beetle species richness. The cost-effectiveness of restoration actions is lower in remnant and revegetated areas than in cleared areas because of the higher marginal benefits arising from acting in degraded habitats. This result is contingent on having favourable landowner attitudes. Under the best-case landowner demographic scenarios the greatest biodiversity benefits are seen when cleared areas are restored. We find that current restoration investment practices may not be increasing faunal species richness in agricultural landscapes in the most cost-effective way, and that new restoration actions may be necessary. Integrated socio-ecological models support transparent and cost-effective conservation investment decisions. Application of these models highlights the importance of collecting both social and ecological data when attempting to understand and manage socio-ecological systems.

Reptiles in restored agricultural landscapes: the value of linear strips, patches and habitat condition

Habitat restoration, including revegetation of linear strips and enlargement of remnant patches, may benefit native fauna in highly fragmented landscapes. Such restoration has occurred around the world, even though the relative importance of strips and patches of vegetation remains controversial. Using reptile communities from south-eastern Australia, we assessed the conservation value of revegetation in strips and alongside remnant patches compared with remnant vegetation and cleared roadsides. We also examined the distance that reptiles occurred from remnant patches into linear vegetation. We found that reptile species richness and counts did not substantially differ between revegetated, remnant and cleared habitats, or between linear strip and patch treatments. This may indicate that species sensitive to land clearing have already been lost from the landscape. These results imply that if specialist species have already been lost, we may be unable to measure the effects of agriculture on biodiversity. Furthermore, revegetation with the expectation that fauna will recolonize may be unrealistic and translocations may be necessary. Unexpectedly, we recorded higher species richness and counts of rare reptile species in remnant linear strips as distance from remnant patches increased. Ground-layer attributes were important for increasing reptile species richness and counts and in structuring reptile communities, explaining approximately three times as much variation as remnant shape or vegetation type (remnant, revegetated, cleared). Management agencies should protect and effectively manage remnant linear strips if rarer reptiles are to be retained, paying particular attention to ground-layer attributes. The decision to include ground layers in future revegetation activities will be more important than the shape of restored areas.

Strong influence of local habitat structure on mammals reveals mismatch with edge effects models

Context: What determines mammal occurrence across wildland-urban edges? A better understanding of the variables involved will help update edge effects theory and improve our ability to conserve biota in urbanizing landscapes. Objectives: For the first time, we tested whether the occurrence of mammals across urban-forest edges and forest interiors was best predicted by: (1) edge variables (i.e. edge type and distance to an urban boundary), (2) local habitat structure (e.g. proportion of understory cover), or (3) edge variables after accounting for local habitat structure. Methods: Using 77 camera stations in South-Eastern Australia, we quantified the factors influencing the occurrence of five native mammals (brown antechinus, bush rat, common brushtail possum, black wallaby and long-nosed bandicoot) and three non-native mammals (red fox, cat, and dog). Results: The occurrence of most native and non-native mammals was best predicted by local habitat structure rather than by edge variables. Although edge variables had effects on most species occurrences, local habitat structure outweighed the impacts of edge effects. Conclusions: Our findings are important for management and urban planning as they suggest that local-scale management of habitat and habitat retention at urban edges will mitigate urban impacts on fauna. Our work reveals a critical mismatch in the spatial scale of predictive variables commonly used in edge effects models (edge types and distance to a boundary) compared with the smaller scale of local habitat variables, which underlie most species occurrence. We emphasize the need to consider heterogeneity within patches in predictive frameworks of edge effects.

Variation in the impact of non-native seaweeds along gradients of habitat degradation: a meta-analysis and an experimental test

Biological invasions are acknowledged among the main drivers of global changes in biodiversity. Despite compelling evidence of species interactions being strongly regulated by environmental conditions, there is a dearth of studies investi-gating how the effects of non-native species vary among areas exposed to different anthropogenic pressures. Focusing on marine macroalgae, we performed a meta-analysis to test whether and how the direction and magnitude of their effects on resident communities and species varies in relation to cumulative anthropogenic impact levels. The relationship between human impact levels and non-native species impact intensity emerged only for a reduced subset of the response variables examined. Yet, there was a trend for the effects of non-native species on community biomass and abundance and on species abundance to become less negative at heavily impacted sites. By contrast, the magnitude of negative effects of seaweed on community evenness tended to increase with human impact levels. The hypothesis of decreasing severity of invader’ impacts along a gradient of habitat degradation was also tested experimentally at a regional scale by comparing the effects of the removal of non-native alga,
Caulerpa cylindracea, on resident assemblages among rocky reefs exposed to different anthropogenic pressures. Assemblages at urban and pristine site did not differ when invaded, but did so when C. cylindracea was removed. Our results suggest that, despite the generally weak relationship between human impacts levels and non-native species impacts, more negative impacts can be expected in less stressful environments (i.e. less degraded or pristine sites), where competitive interactions are presumably the driving force structuring resident communities. Implementing strategies for controlling the establishment of non-native seaweeds should be, thus, considered a priority for preserving biodiversity in relatively pristine areas. On the other hand, control of invaders at degraded sites could be warranted to lessen their role as propagule sources

A chain is as strong as its weakest link: assessing the consequences of habitat loss and degradation in a long-distance migratory shorebird

The conservation of migratory species represents a major challenge, as they use multiple sites, all contributing in varying degrees in sustaining high survival and reproductive success. There is particular concern for shorebirds of the East Asian-Australasian Flyway (EAAF), where declining numbers of migratory species have mostly been attributed to habitat loss along the East Asian coast. Using a stochastic dynamic programming migration model, we assessed the effect of habitat degradation scenarios along the EAAF on migration behaviour, survival and reproductive success of a long-distance migrating shorebird, the Ruddy Turnstone (Arenaria interpres). Following manipulation of habitat quality through changes in intake rate, we found that changes on the wintering (major non-breeding) ground in South Australia had the highest negative effect on reproductive success and survival. We also identified Taiwan and the Yellow Sea as sites with high importance for reproductive success. Although habitats along the East Asian coastline are currently most threatened from a range of global change processes, we highlight the importance of conserving high-quality shorebird wintering habitat in Australia. This may be of notable importance to trans-equatorial migratory shorebirds, which often make a long non-stop flight from their wintering grounds in order to skip low-latitude sites that typically provide little food.

Why fly the extra mile? Using stress biomarkers to assess wintering habitat quality in migratory shorebirds

Migratory birds make decisions about how far to travel based on cost-benefit trade-offs. However, in many cases the net effect of these trade-offs is unclear. We sought to address this question by measuring feather corticosterone (CORTf), leucocyte profile, avian malaria parasite prevalence and estimating fueling rates in three spatially segregated wintering populations of the migratory shorebird ruddy turnstone Arenaria interpres during their stay in the winter habitat. These birds fly from the high-Arctic breeding ground to Australia, but differ in that some decide to end their migration early (Broome, Western Australia), whereas others travel further to either South Australia or Tasmania. We hypothesized that the extra costs in birds migrating greater distances and overwintering in colder climates would be offset by benefits when reaching their destination. This would be evidenced by lower stress biomarkers in populations that travel further, owing to the expected benefits of greater resources and improved vitality. We show that avian malaria prevalence and physiological stress levels were lower in birds flying to South Australia and Tasmania than those overwintering in Broome. Furthermore, our modeling predicts that birds in the southernmost locations enjoy higher fueling rates. Our data are consistent with the interpretation that birds occupying more costly wintering locations in terms of higher migratory flight and thermoregulatory costs are compensated by better feeding conditions and lower blood parasite infections, which facilitates timely and speedy migration back to the breeding ground. These data contribute to our understanding of cost-benefit trade-offs in the decision making underlying migratory behaviour.

Habitat-specific foraging strategies in Australasian gannets

Knowledge of top predator foraging adaptability is imperative for predicting their biological response to environmental variability. While seabirds have developed highly specialised techniques to locate prey, little is known about intraspecific variation in foraging strategies with many studies deriving information from uniform oceanic environments. Australasian gannets (Morus serrator) typically forage in continental shelf regions on small schooling prey. The present study used GPS and video data loggers to compare habitat-specific foraging strategies at two sites of contrasting oceanographic regimes (deep water near the continental shelf edge, n=23; shallow inshore embayment, n=26), in south-eastern Australia. Individuals from the continental shelf site exhibited pelagic foraging behaviours typical of gannet species, using local enhancement to locate and feed on small schooling fish; in contrast only 50% of the individuals from the inshore site foraged offshore, displaying the typical pelagic foraging strategy. The remainder adopted a strategy of searching sand banks in shallow inshore waters in the absence of conspecifics and other predators for large, single prey items. Furthermore, of the individuals foraging inshore, 93% were male, indicating that the inshore strategy may be sex-specific. Large inter-colony differences in Australasian gannets suggest strong plasticity in foraging behaviours, essential for adapting to environmental change.

An obligate beach bird selects sub-, inter- and supra-tidal habitat elements

Few habitat models are available for widespread, obligate, high-energy sandy shore vertebrates, such as the Eastern Hooded Plover Thinornis cucullatus cucullatus. We examined habitat attributes which determined the difference between sites where plovers breed and randomly-selected absence sites (determined from long-term systematic monitoring). A variety of habitat variables were derived from aerial photography and bathymetric and terrestrial Light Detection And Ranging (LiDAR) data. Logistic regression against eight candidate variables, in a model selection framework, revealed considerable support for four variables with respect to explaining the presence of breeding territories. In particular, the amount of unvegetated dune and foredune which was unvegetated, and the amount of intertidal and sub-tidal reef were positively associated with the presence of breeding territories. Thus, plovers apparently select certain habitat in which to breed, involving sub-tidal, intertidal and supra-tidal habitat elements. The model also helps explain the virtual absence of breeding plovers from long sections of superficially suitable habitat, such as the fourth longest continuous beach in the world.