Community-onset Staphylococcus aureus infections presenting to general practices in South-eastern Australia

Community-acquired Staphylococcus aureus infections are a public health concern, yet little is known about infections that do not present to hospital. We identified community-onset S. aureus infections via specimens submitted to a community-based pathology service. Referring doctors confirmed eligibility and described infection site, severity and treatment. Isolates were characterized on antibiotic resistance, PFGE, MLST/SCCmec, and Panton–Valentine leukocidin (PVL), representing 106 community-onset infections; 34 non-multiresistant methicillin-resistant S. aureus (nmMRSA) (resistant to <3 non-β-lactam antibiotics), 15 multiply antibiotic-resistant MRSA (mMRSA) and 57 methicillin-sensitive S. aureus (MSSA). Most (93%) were skin and soft tissue infections. PVL genes were carried by 42% of nmMRSA isolates [95% confidence interval (CI) 26–61] and 15% of MSSA (95% CI 8–28). PVL was associated with infections of the trunk, head or neck (56·4% vs. 24·3%, P= 0·005) in younger patients (23 vs. 52 years, P< 0·001), and with boils or abscesses (OR 8·67, 95% CI 2·9–26·2), suggesting underlying differences in exposure and/or pathogenesis.

Reproduction in five sympatric batoid species (family urolophidae) from south-eastern Australia

This PhD determines the reproductive biology of five stingaree species caught as bycatch from south-eastern Australian commercial fisheries for fisheries stock assessments, ecological risk assessments, and species extinction risk evaluations.

Refractive errors in students from Middle Eastern backgrounds living and undertaking schooling in Australia

Background:  Environmental factors associated with schooling systems in various countries have been implicated in the rising prevalence of myopia, making the comparison of prevalence of refractive errors in migrant populations of interest. This study aims to determine the prevalence of refractive errors in children of Middle Eastern descent, raised and living in urban Australia but actively maintaining strong ties to their ethnic culture, and to compare them with those in the Middle East where myopia prevalence is generally low.Methods:  A total of 354 out of a possible 384 late primary/early secondary schoolchildren attending a private school attracting children of Middle Eastern background in Melbourne were assessed for refractive error and visual acuity. A Shin Nippon open-field NVision-K5001 autorefractor was used to carry out non-cycloplegic autorefraction while viewing a distant target. For statistical analyses students were divided into three age groups: 10–11 years (n = 93); 12–13 years (n = 158); and 14–15 years (n = 102).Results:  All children were bilingual and classified as of Middle Eastern (96.3 per cent) or Egyptian (3.7 per cent) origin. Ages ranged from 10 to 15 years, with a mean of 13.17 ± 0.8 (SEM) years. Mean spherical equivalent refraction (SER) for the right eye was +0.09 ± 0.07 D (SEM) with a range from -7.77 D to +5.85 D. The prevalence of myopia, defined as a spherical equivalent refraction 0.50 D or more of myopia, was 14.7 per cent. The prevalence of hyperopia, defined as a spherical equivalent refraction of +0.75 D or greater, was 16.4 per cent, while hyperopia of +1.50 D or greater was 5.4 per cent. A significant difference in SER was seen as a function of age; however, no significant gender difference was seen.Conclusions:  This is the first study to report the prevalence of refractive errors for second-generation Australian schoolchildren coming from a predominantly Lebanese Middle Eastern Arabic background, who endeavour to maintain their ethnic ties. The relatively low prevalence of myopia is similar to that found for other metropolitan Australian school children but higher than that reported in the Middle East. These results suggest that lifestyle and educational practices may be a significant influence in the progression of myopic refractive errors.

Dynamics and spatio-temporal variability of environmental factors in Eastern Australia using functional principal component analysis

This paper introduces a new technique in ecology to analyze spatial and temporal variability in environmental variables. By using simple statistics, we explore the relations between abiotic and biotic variables that influence animal distributions. However, spatial and temporal variability in rainfall, a key variable in ecological studies, can cause difficulties to any basic model including time evolution. The study was of a landscape scale (three million square kilometers in eastern Australia), mainly over the period of 19982004. We simultaneously considered qualitative spatial (soil and habitat types) and quantitative temporal (rainfall) variables in a Geographical Information System environment. In addition to some techniques commonly used in ecology, we applied a new method, Functional Principal Component Analysis, which proved to be very suitable for this case, as it explained more than 97% of the total variance of the rainfall data, providing us with substitute variables that are easier to manage and are even able to explain rainfall patterns. The main variable came from a habitat classification that showed strong correlations with rainfall values and soil types. © 2010 World Scientific Publishing Company.

Predicting avian distributions to evaluate spatiotemporal overlap with locust control operations in eastern Australia.

Locusts and grasshoppers cause considerable economic damage to agriculture worldwide. The Australian Plague Locust Commission uses multiple pesticides to control locusts in eastern Australia. Avian exposure to agricultural pesticides is of conservation concern, especially in the case of rare and threatened species. The aim of this study was to evaluate the probability of pesticide exposure of native avian species during operational locust control based on knowledge of species occurrence in areas and times of application. Using presence-absence data provided by the Birds Australia Atlas for 1998 to 2002, we developed a series of generalized linear models to predict avian occurrences on a monthly basis in 0.5 degrees grid cells for 280 species over 2 million km2 in eastern Australia. We constructed species-specific models relating occupancy patterns to survey date and location, rainfall, and derived habitat preference. Model complexity depended on the number of observations available. Model output was the probability of occurrence for each species at times and locations of past locust control operations within the 5-year study period. Given the high spatiotemporal variability of locust control events, the variability in predicted bird species presence was high, with 108 of the total 280 species being included at least once in the top 20 predicted species for individual space-time events. The models were evaluated using field surveys collected between 2000 and 2005, at sites with and without locust outbreaks. Model strength varied among species. Some species were under- or over-predicted as times and locations of interest typically did not correspond to those in the prediction data set and certain species were likely attracted to locusts as a food source. Field surveys demonstrated the utility of the spatially explicit species lists derived from the models but also identified the presence of a number of previously unanticipated species. These results also emphasize the need for special consideration of rare and threatened species that are poorly predicted by presence-absence models. This modeling exercise was a useful a priori approach in species risk assessments to identify species present at times and locations of locust control applications, and to discover gaps in our knowledge and need for further focused data collection.

Regional differences in the reproductive parameters of the sparsely-spotted stingaree, Urolophus paucimaculatus, from South-Eastern Australia

Whether spatial variation occurs in the life-history traits of chondrichthyan species is important to fisheries modelling and assessments. A study on the reproductive parameters of Urolophus paucimaculatus from four separate regions across south-eastern Australia found regional differences in maximum total length (TL), size-at-maturity, size-at-maternity and litter sizes. Inshore embayments (Port Phillip Bay (PPB) and Corner Inlet (CI)) appear to allow for larger TLs (females and males) than do offshore areas (Lakes Entrance (LE) and Western Bass Strait (WBS)). Size-at-maturity and size-at-maternity decreased across longitude from west (PPB) to east (LE) and seasonality of parturition and ovulation occurred earlier in PPB (August-October) than in LE (September-December). Maximum litter size correlated with maximum TL (six in PPB, five in each of CI and LE, and four in WBS). There was uncertainty in classifying females for maternal condition because the reproductive cycle appears to range from a continuous annual cycle to a non-continuous biennial cycle. Much of the uncertainty arises from the ambiguity of observation of non-pregnant mature females, which have either aborted through capture and handling, or are in a 'resting year' between pregnancies. Most likely, the majority are reproducing annually with an unknown proportion of females non-continuous and resting between pregnancies.

Asynchrony and regional differences in the reproductive cycle of the greenback stingaree Urolophus viridis from south-eastern Australia

Determining the periodicity of the reproductive cycle in chondrichthyan species when the population is recruiting asynchronously, as found for Urolopus viridis, can be problematic. The reproductive cycle generally requires distinguishable trends in reproductive indices across the population. The present study utilised other similar and sympatric urolophid species with synchronous reproductive cycles. Through data collected in the present study and comparisons of maximum total length (TL), periodicity of egg and embryo in utero, ovarian cycles, largest ovarian follicle diameter, and matrotrophic contribution (percentage increase from egg to embryo after maternal histotroph supplement) from similar studies, an annual reproductive cycle can be hypothesised. Sampling across two separate regions of Lakes Entrance (LE) and Western Bass Strait (WBS), U. viridis also showed regionality in several of the reproductive indices. Maximum TL and mass for females, mean size-at-birth, and female size-at-maturity and size-at-maternity in LE were markedly smaller than in WBS. In both regions litter size (1–2) increased with TL, with an exception of one female in WBS producing a litter of 3 which could be attributed to the larger TL. The implication of U. viridis producing such few young annually is they have the lowest biological productivity of any urolophid species in south-eastern Australia.

The significance of northern-central Bass Strait in south-eastern Australia as habitat for burrowing seabirds

The present study provides the first complete estimate of the abundance and distribution of burrowing seabirds in northern-central Bass Strait, a key region for breeding seabirds in south-eastern Australia. The estimated total number of breeding burrows in the region in 2008-11 were 755300±32400 (s.e.) burrows of Short-tailed Shearwaters (Ardenna tenuirostris), 26700±3500 of Little Penguins (Eudyptula minor), 19100±2200 of Common Diving-Petrels (Pelecanoides urinatrix) and 4200±2700 of Fairy Prions (Pachyptila turtur). These represent substantial proportions of the total estimated Australian breeding populations of these species: 6% of the total population of Short-tailed Shearwaters, 14% of Little Penguins, 0.4% of Fairy Prions and 13% of Common Diving-Petrels. Based on the number of active burrows, the number of breeding Short-tailed Shearwaters in the region is estimated to have decreased 35% between 1978-80 and 2008-11, equivalent to a decrease of 1.4% per annum between 1980 and 2011. The regional population of Little Penguins, however, appears to have increased substantially over the same period. Identification of population trends of the other species is limited by a lack of previous data. The importance of this area for burrowing seabirds and the substantial decline in numbers of Short-tailed Shearwaters warrants more frequent monitoring of the abundance of seabirds in the region to allow a robust comparison of changes in populations over time as well as the identification of possible causative factors. © BirdLife Australia 2014.

Population genetic structure of the Australian caddisfly Lectrides varians Mosely (Trichoptera: Leptoceridae) and the identification of cryptic species in south-eastern Australia

Lectrides varians (Mosely) is a large, ecologically-important, caddisfly found in perennial and intermittent streams throughout much of eastern Australia. We conducted a population genetic analysis to investigate the dispersal potential of L. varians, building on previous works that have assessed life-history traits associated with drought resistance. Genetic analyses of L. varians from the Grampians region of Victoria, based on mitochondrial DNA sequence data, revealed extensive gene flow and a lack of genetic structure across the sample range (ΦST = 0.04). This suggests that the species is a strong disperser and is likely to be resilient to increased drying and habitat fragmentation under climate change considering other known resistance traits. However, during this study, two divergent genotypes were identified, indicating a potential species complex. A comprehensive phylogenetic analysis of L. varians across its current range was subsequently performed, confirming the species is indeed paraphyletic, consisting of one lineage that is restricted to the Grampians National Park and the other being widespread throughout south-eastern Australia. Further analyses revealed consistent morphological differences between these lineages supporting the notion that L. varians is a species complex. We discuss the implications of these findings with regard to conservation and taxonomy of this important invertebrate group.