Machine-learning prediction of cancer survival: a retrospective study using electronic administrative records and a cancer registry

Using the prediction of cancer outcome as a model, we have tested the hypothesis that through analysing routinely collected digital data contained in an electronic administrative record (EAR), using machine-learning techniques, we could enhance conventional methods in predicting clinical outcomes.

Out of the frying pan, into the fire : Cantrills Filmnotes as Prestige Machine

This examination of the gaps and ambiguities linked to Cantrills Filmnotes (CF), an Australian publication on experimental film, offers a case study on the production and ownership of Pierre Bourdieu’s 'cultural capital' in film art at the margins, witnessed first-hand. CF emerged at the intersection between the street and the academy, spanning that period from the 70s till its abandonment in 2000 during which, it is argued here, it migrated from the former to the latter. This examination surveils, in retrospect, for whose benefit was the magazine's accumulation of power, status and prestige exercised, in whose service was it exacted? CF’s manifesto-like editorial rhetoric was often directed at perceived shortcomings of those institutions servicing film art in Australia. What is revealed when such a critical eye focuses on the production of Cantrills Filmnotes (CF) itself? CF's cultural production has a further dimension of both taking on and taking place inside a colonial mind-set, a cultural cringe often the subject of editorial commentary, elucidating a practice residing at the geographic margins of a marginal arts practice. The founders and editors of CF, the married couple Corinne and Arthur Cantrill both suffered and benefited from CF’s impact on this international field of art production.

Support vector machine (SVM) based multiclass prediction with basic statistical analysis of plasminogen activators

Plasminogen (Pg), the precursor of the proteolytic and fibrinolytic enzyme of blood, is converted to the active enzyme plasmin (Pm) by different plasminogen activators (tissue plasminogen activators and urokinase), including the bacterial activators streptokinase and staphylokinase, which activate Pg to Pm and thus are used clinically for thrombolysis. The identification of Pg-activators is therefore an important step in understanding their functional mechanism and derives new therapies.

Fog computing: a cloud to the ground support for smart things and machine-to-machine networks

Cloud services to smart things face latency and intermittent connectivity issues. Fog devices are positioned between cloud and smart devices. Their high speed Internet connection to the cloud, and physical proximity to users, enable real time applications and location based services, and mobility support. Cisco promoted fog computing concept in the areas of smart grid, connected vehicles and wireless sensor and actuator networks. This survey article expands this concept to the decentralized smart building control, recognizes cloudlets as special case of fog computing, and relates it to the software defined networks (SDN) scenarios. Our literature review identifies a handful number of articles. Cooperative data scheduling and adaptive traffic light problems in SDN based vehicular networks, and demand response management in macro station and micro-grid based smart grids are discussed. Security, privacy and trust issues, control information overhead and network control policies do not seem to be studied so far within the fog computing concept.

Is demography destiny? Application of machine learning techniques to accurately predict population health outcomes from a minimal demographic dataset

For years, we have relied on population surveys to keep track of regional public health statistics, including the prevalence of non-communicable diseases. Because of the cost and limitations of such surveys, we often do not have the up-to-date data on health outcomes of a region. In this paper, we examined the feasibility of inferring regional health outcomes from socio-demographic data that are widely available and timely updated through national censuses and community surveys. Using data for 50 American states (excluding Washington DC) from 2007 to 2012, we constructed a machine-learning model to predict the prevalence of six non-communicable disease (NCD) outcomes (four NCDs and two major clinical risk factors), based on population socio-demographic characteristics from the American Community Survey. We found that regional prevalence estimates for non-communicable diseases can be reasonably predicted. The predictions were highly correlated with the observed data, in both the states included in the derivation model (median correlation 0.88) and those excluded from the development for use as a completely separated validation sample (median correlation 0.85), demonstrating that the model had sufficient external validity to make good predictions, based on demographics alone, for areas not included in the model development. This highlights both the utility of this sophisticated approach to model development, and the vital importance of simple socio-demographic characteristics as both indicators and determinants of chronic disease.

Classification of electrocardiogram and auscultatory blood pressure signals using machine learning models

In this paper, two real-world medical classification problems using electrocardiogram (ECG) and auscultatory blood pressure (Korotkoff) signals are examined. A total of nine machine learning models are applied to perform classification of the medical data sets. A number of useful performance metrics which include accuracy, sensitivity, specificity, as well as the area under the receiver operating characteristic curve are computed. In addition to the original data sets, noisy data sets are generated to evaluate the robustness of the classifiers against noise. The 10-fold cross validation method is used to compute the performance statistics, in order to ensure statistically reliable results pertaining to classification of the ECG and Korotkoff signals are produced. The outcomes indicate that while logistic regression models perform the best with the original data set, ensemble machine learning models achieve good accuracy rates with noisy data sets.

Fusing data mining, machine learning and traditional statistics to detect biomarkers associated with depression

BACKGROUND: Atheoretical large-scale data mining techniques using machine learning algorithms have promise in the analysis of large epidemiological datasets. This study illustrates the use of a hybrid methodology for variable selection that took account of missing data and complex survey design to identify key biomarkers associated with depression from a large epidemiological study.

METHODS: The study used a three-step methodology amalgamating multiple imputation, a machine learning boosted regression algorithm and logistic regression, to identify key biomarkers associated with depression in the National Health and Nutrition Examination Study (2009-2010). Depression was measured using the Patient Health Questionnaire-9 and 67 biomarkers were analysed. Covariates in this study included gender, age, race, smoking, food security, Poverty Income Ratio, Body Mass Index, physical activity, alcohol use, medical conditions and medications. The final imputed weighted multiple logistic regression model included possible confounders and moderators.

RESULTS: After the creation of 20 imputation data sets from multiple chained regression sequences, machine learning boosted regression initially identified 21 biomarkers associated with depression. Using traditional logistic regression methods, including controlling for possible confounders and moderators, a final set of three biomarkers were selected. The final three biomarkers from the novel hybrid variable selection methodology were red cell distribution width (OR 1.15; 95% CI 1.01, 1.30), serum glucose (OR 1.01; 95% CI 1.00, 1.01) and total bilirubin (OR 0.12; 95% CI 0.05, 0.28). Significant interactions were found between total bilirubin with Mexican American/Hispanic group (p = 0.016), and current smokers (p<0.001).

CONCLUSION: The systematic use of a hybrid methodology for variable selection, fusing data mining techniques using a machine learning algorithm with traditional statistical modelling, accounted for missing data and complex survey sampling methodology and was demonstrated to be a useful tool for detecting three biomarkers associated with depression for future hypothesis generation: red cell distribution width, serum glucose and total bilirubin.

Fast one-class support vector machine for novelty detection

Novelty detection arises as an important learning task in several applications. Kernel-based approach to novelty detection has been widely used due to its theoretical rigor and elegance of geometric interpretation. However, computational complexity is a major obstacle in this approach. In this paper, leveraging on the cutting-plane framework with the well-known One-Class Support Vector Machine, we present a new solution that can scale up seamlessly with data. The first solution is exact and linear when viewed through the cutting-plane; the second employed a sampling strategy that remarkably has a constant computational complexity defined relatively to the probability of approximation accuracy. Several datasets are benchmarked to demonstrate the credibility of our framework.

BacHbpred: support vector machine methods for the prediction of bacterial hemoglobin-like proteins

The recent upsurge in microbial genome data has revealed that hemoglobin-like (HbL) proteins may be widely distributed among bacteria and that some organisms may carry more than one HbL encoding gene. However, the discovery of HbL proteins has been limited to a small number of bacteria only. This study describes the prediction of HbL proteins and their domain classification using a machine learning approach. Support vector machine (SVM) models were developed for predicting HbL proteins based upon amino acid composition (AC), dipeptide composition (DC), hybrid method (AC + DC), and position specific scoring matrix (PSSM). In addition, we introduce for the first time a new prediction method based on max to min amino acid residue (MM) profiles. The average accuracy, standard deviation (SD), false positive rate (FPR), confusion matrix, and receiver operating characteristic (ROC) were analyzed. We also compared the performance of our proposed models in homology detection databases. The performance of the different approaches was estimated using fivefold cross-validation techniques. Prediction accuracy was further investigated through confusion matrix and ROC curve analysis. All experimental results indicate that the proposed BacHbpred can be a perspective predictor for determination of HbL related proteins. BacHbpred, a web tool, has been developed for HbL prediction.

A multiobjective state transition algorithm for single machine scheduling

In this paper, a discrete state transition algorithm is introduced to solve a multiobjective single machine job shop scheduling problem. In the proposed approach, a non-dominated sort technique is used to select the best from a candidate state set, and a Pareto archived strategy is adopted to keep all the non-dominated solutions. Compared with the enumeration and other heuristics, experimental results have demonstrated the effectiveness of the multiobjective state transition algorithm.

Sparse adaptive multi-hyperplane machine

The Adaptive Multiple-hyperplane Machine (AMM) was recently proposed to deal with large-scale datasets. However, it has no principle to tune the complexity and sparsity levels of the solution. Addressing the sparsity is important to improve learning generalization, prediction accuracy and computational speedup. In this paper, we employ the max-margin principle and sparse approach to propose a new Sparse AMM (SAMM). We solve the new optimization objective function with stochastic gradient descent (SGD). Besides inheriting the good features of SGD-based learning method and the original AMM, our proposed Sparse AMM provides machinery and flexibility to tune the complexity and sparsity of the solution, making it possible to avoid overfitting and underfitting. We validate our approach on several large benchmark datasets. We show that with the ability to control sparsity, the proposed Sparse AMM yields superior classification accuracy to the original AMM while simultaneously achieving computational speedup.

A systematic design of interval type-2 fuzzy logic system using extreme learning machine for electricity load demand forecasting

This paper presents a novel design of interval type-2 fuzzy logic systems (IT2FLS) by utilizing the theory of extreme learning machine (ELM) for electricity load demand forecasting. ELM has become a popular learning algorithm for single hidden layer feed-forward neural networks (SLFN). From the functional equivalence between the SLFN and fuzzy inference system, a hybrid of fuzzy-ELM has gained attention of the researchers. This paper extends the concept of fuzzy-ELM to an IT2FLS based on ELM (IT2FELM). In the proposed design the antecedent membership function parameters of the IT2FLS are generated randomly, whereas the consequent part parameters are determined analytically by the Moore-Penrose pseudo inverse. The ELM strategy ensures fast learning of the IT2FLS as well as optimality of the parameters. Effectiveness of the proposed design of IT2FLS is demonstrated with the application of forecasting nonlinear and chaotic data sets. Nonlinear data of electricity load from the Australian National Electricity Market for the Victoria region and from the Ontario Electricity Market are considered here. The proposed model is also applied to forecast Mackey-glass chaotic time series data. Comparative analysis of the proposed model is conducted with some traditional models such as neural networks (NN) and adaptive neuro fuzzy inference system (ANFIS). In order to verify the structure of the proposed design of IT2FLS an alternate design of IT2FLS based on Kalman filter (KF) is also utilized for the comparison purposes.