Performance of intensively farmed Murray cod Maccullochella peelii peelii (Mitchell) fed newly formulated vs. currently used commercial diets, and a comparison of fillet composition of farmed and wild fish

Murray cod is a top-order carnivore with high culture potential. Currently, there are no commercial diets formulated specifically for Murray cod. In this study, results of two growth trials on Murray cod (80–83.5-g mean initial weight), conducted in commercial settings, using two laboratory-formulated diets (DU1 and DU2; 48.9% and 49.1% protein, and 16.9% and 16.1% lipid, respectively, on a dry matter basis), and two commercial diets, formulated for other species (salmon – CD/S and barramundi – CD/B) but used in Murray cod farming are presented. The two commercial diets had less protein (46.6% and 44.4%) but higher lipid (21.7% and 19.5%). The energy content of the feeds tested was similar (about 20–22 kJ g−1). The growth performance and feed utilization of Murray cod did not differ significantly amongst the diets, but the food conversion ratio and % protein efficiency ratio in fish fed the DU1 and DU2 diets were consistently better. There was significantly less carcass and muscle lipid deposition in fish fed with the latter diets. Of the fatty acids in muscle, the lowest amounts (in μg mg lipid−1) of n-3 (262.5±2.9), n-6 (39.8±0.9) and polyunsaturated fatty acid (PUFA) (302.3±3.8) were observed in fish fed CD/S, and the highest in fish fed DU2 and CD/B. Fatty acids 16:0 and 18:0, 18:1n-9 and 16:1n-7, and 22:6n-3, 20:5n-3, 22:5n-3 and 18:2n-6 were the dominant fatty acids amongst the saturates, monoenes and PUFA, respectively, and accounted for 80.8–88.7% of all identified fatty acids (23) in muscle of Murray cod. The study showed that Murray cod could be cultured successfully on a diet (DU2) containing 20% soybean meal without compromising growth and/or carcass quality. Differences in the proximate composition and fatty acid composition of muscle of wild and farmed Murray cod were observed, the most obvious being in the latter. Wild Murray cod had significantly less (P<0.05) saturates (192.6±1.84 vs. 266.3±3.51), monoenes (156.5±8.7 vs. 207.6±6.19), n-3 (145.2±5.24 vs. 261.8±3.2) but higher n-6 (144.3±2.73 vs. 48.3±1.38) in muscle (all values are in μg mg lipid−1) than in farmed fish. Wild fish also had a much lower n-3 to n-6 ratio (1.0±0.03 vs. 5.4±0.09).

Strong population genetic structure and its management implications in the mud carp Cirrhinus molitorella, an indigenous freshwater species subject to an aquaculture and culture-based fishery

This study investigated population genetic structure and diversity of mud carp Cirrhinus molitorella, a species widely used in aquaculture and culture-based fisheries in China and Mekong River riparian countries. Seven newly developed and one published microsatellite DNA markers were used to analyse samples from six wild locations, four hatchery broodstocks and one farmed site from the Mekong, Red and Pearl Rivers. Significant genetic structure was detected in C. molitorella, with isolation-by-distance being a strong force in the Mekong. Pair-wise F_ST, Fisher's exact tests for population differentiation, permutation tests and individual-based structure analysis all support the recognition of a sample originating from Toul Krasaing Lake (Cambodia) and one between Kratie and Stung Treng (Cambodia) as distinct from the remainder of the sampled range. Samples from the main upper Mekong and the Nam Khan River were significantly differentiated, but on a time scale inferred to be short (i.e. by genetic drift, not sufficient for evolution of new microsatellite alleles). The Mekong stock of C. molitorella was strongly differentiated from those from the Red and Pearl Rivers, inferred to be on an evolutionary time scale. Finer-scale sampling is warranted to further improve the understanding of genetic interactions among fish from the Mekong and its tributaries. Detailed studies on the ecology of C. molitorella (e.g. migration pathways and preferred spawning habitats) would provide useful information to explain the patterns of genetic structure detected here, and deepen insights about evolutionary distinctiveness of the population units.

Introgression of domesticated alleles into a wild trout genotype and the impact on seasonal survival in natural lakes

We tested the fitness consequences of introgression of fast-growing domesticated fish into a wild population. Fry from wild and domesticated rainbow trout (Oncorhynchus mykiss) crosses, F1 hybrids, and first- and second-generation backcrosses were released into two natural lakes. Parentage analysis using microsatellite loci facilitated the identification of survivors, so fitness was estimated in nature from the first-feeding stage. Results indicated that under certain conditions, domesticated fish survived at least as well as wild fish within the same environment. Relative growth and survival of the crosses, however, were highly dependent on environment. During the first summer, fastest-growing crosses had the highest survival, but this trend was reversed after one winter and another summer. Although the F1 hybrids showed evidence of outbreeding depression because of the disruption of local adaptation, there was little evidence of outbreeding depression in the backcrosses, and the second-generation backcrosses exhibited a wild-type phenotype. This information is relevant for assessing the multigenerational risk of escaped or released domesticated fish should they successfully interbreed with wild populations and provides information on how to minimize detrimental impacts of a conservation breeding and/or management programme. These data also further understanding of the selection pressures in nature that maintain submaximal rates of growth.

Habitat use by the hymenosomatid crab Amarinus lacustris (Chilton) in two south-eastern Australian rivers

The hymenosomatid crab Amarinus lacustris is abundant in some south-eastern Australian rivers; however, little is known of its ecology. Patterns of habitat use by crabs in rivers may be affected by seasonal changes in river discharge. This study investigates population characteristics, timing of reproduction and patterns of habitat use by A. lacustris in five riffle and pool habitats from each of the Hopkins and Merri Rivers in south-west Victoria, Australia, sampled over a twelve-month period. Distribution of Amarinus lacustris was similar between the two rivers, but log-linear modelling showed that there was a strong association between crab sex, habitat occupied and time of year because female A. lacustris showed a shift from riffle to pool habitats during March and April, coinciding with the non-gravid period of the year. Male crabs also showed a change in relative occurrence, occurring most often in riffles during winter–spring (July–November) but being equally common in both habitats in summer–autumn (January–May). These patterns are probably the result of the reproductive cycle of A. lacustris, which appears to show both ontogenetic and sex-related changes in habitat use during its life cycle, taking advantage of seasonal fluctuations in flow regime that may assist egg/larval development and dispersal.

The influence of reduced flow during a drought on patterns of variation in macroinvertebrate assemblages across a spatial hierarchy in two lowland rivers

1. With the aim of determining whether patterns of variation in macroinvertebrate assemblage composition across the hierarchy of spatial units in two lowland rivers changed during a supra-seasonal drought (1997–2000), patterns during a reduced flow season (1999–2000) were compared with those during two preceding higher flow seasons (1997–98 and 1998–99) using samples from the Glenelg and Wimmera Rivers, two lowland regulated rivers in western Victoria, Australia.

2. We hypothesised that (i) differences between reaches would increase during the reduced flow season owing to decreased hydrological connectivity, (ii) differences between the habitats would decrease because the cessation of flow in run habitats should cause them to become more similar to pool habitats and (iii) differences between microhabitats would also decrease because of reduced scour of inorganic substrata and large woody debris.

3. During each season, macroinvertebrates were sampled from three microhabitats (sand/silt substratum, large woody debris and macrophytes) that were hierarchically nested within a run or pool habitat and within one of three reaches within each river. A range of physico-chemical variables was also sampled.

4. Analysis of similarity showed that assemblage composition in both rivers during the higher flow seasons differed more among microhabitats than other spatial units. However, during the reduced flow season, assemblage composition in the Wimmera River differed most among reaches. This change in pattern was associated with the combined effects of decreased flow and longitudinal increases in salinity. In contrast, the fauna of the Glenelg River appeared to be resistant to the effects of the reduced flow season, owing to limited decline in water quality despite lower river discharge.

5. As salinisation and poor water quality in the Wimmera River result from human activities in the catchment, these results support the idea that human impacts on rivers can change macroinvertebrate scaling patterns and exacerbate the effects of drought beyond the tolerance of many riverine macroinvertebrates.

Multiple lines of evidence for the beneficial effects of environmental flows in two lowland rivers in Victoria, Australia

The aim of this study was to identify whether environmental flows released into two lowland rivers (the Glenelg and Wimmera Rivers, western Victoria, Australia) during the spring to autumn period had successfully ameliorated the negative effects of multiple human impacts. Macroinvertebrates and a range of physico-chemical variables were sampled from three reaches in each river. Both rivers were sampled during three environmental release seasons with average-sized releases (1997-1998, 1998-1999 and 2001-2002) and two drought seasons with limited releases (1999-2000 and 2000-2001). The effects of releasing average-sized environmental flows on macroinvertebrates and physico-chemical variables were assessed by comparison with data from the two drought seasons. For the Glenelg River, data from a reference season prior to the release of environmental flows (1995-1996) was also compared to data from the five environmental flow seasons. Multivariate analyses revealed four pieces of evidence indicating that the release of environmental flows effectively slowed the process of environmental degradation in the Glenelg River but not in the Wimmera River: (1) the magnitude of the river discharge was dependent on the size of environmental flow releases; (2) in the Wimmera River, water quality deteriorated markedly during the two drought seasons and correlated strongly with macroinvertebrate assemblage structure, but this was not observed in the Glenelg River; (3) the taxonomic composition of the macroinvertebrate assemblages among contrasting flow release seasons reflected the severe deterioration in water quality of the Wimmera River; (4) despite two drought seasons with minimal environmental flow releases, the macroinvertebrate assemblage in the Glenelg River did not differ from the average-release seasons, nor did it return to a pre-environmental flows condition. Therefore, it appears that environmental flow releases did sustain the macroinvertebrate assemblage and maintain reasonable water quality in the Glenelg River. However, in the Wimmera River, release volumes were too small to maintain low salinities and were associated with marked changes in the macroinvertebrate assemblage. Therefore, there are multiple lines of evidence that environmental flow releases of sufficient magnitude may slow the process of degradation in a regulated lowland river.

Taking environmental water requirements and climate change into account in the designation and management of protected areas for floodplain ecosystems

In 2005, the Victorian government asked the Victorian Environmental Assessment Council (VEAC) to 1) identify and evaluate the extent, condition, values, management, resources and uses of riverine red gum forests and associated fauna, wetlands, floodplain ecosystems and vegetation communities in northern Victoria; and 2) make recommendations relating to the conservation, protection and ecological sustainable use of public land. The design of a comprehensive, adequate and representative (CAR) reserve system was a key part of the recommendations made by VEAC. In order to assist in the decision-making for environmental water allocation for protected areas and other public land, a process for identifying flood-dependent natural values on the Victorian floodplains of the River Murray and its tributaries was developed.

Although some areas such as the Barmah forest are very well known, there have been few comprehensive inventories of important natural values along the Murray floodplains. For this project, VEAC sought out and compiled data on flood requirements (natural flood frequency, critical interval between floods, minimum duration of floods) for all flood-dependent ecological vegetation classes (EVCs) and threatened species along the Goulburn, Ovens, King and Murray Rivers in Victoria. The project did not include the Kerang Lakes and floodplains of the Avoca, Loddon and Campaspe Rivers. 186 threatened species and 110 EVCs (covering 224,247 ha) were identified as flood-dependent and therefore at risk from insufficient flooding.

Past environmental water allocations have targeted a variety of different natural assets (e.g. stressed red gum trees, colonial nesting waterbirds, various fish species), but consideration of the water requirements of the full suite of floodplain ecosystems and significant species has been limited. By considering the water requirements of the full range of natural assets, the effectiveness of water delivery for biodiversity can be maximised. This approach highlights the species and ecosystems most in need of water and builds on the icon sites approach to view the Murray floodplains as an interconnected system. This project also identified for the first time the flood-frequency and duration requirements for the full suite of floodplain ecosystems and significant species.

This project is the most comprehensive identification of water requirements for natural values on the floodplain to date, and is able to be used immediately to guide prioritisation of environmental watering. As more information on floodplain EVCs and species becomes available, the water requirements and distribution of values can be refined by ecologists and land and water managers. That is, the project is intended as the start of an adaptive process allowing for the incorporation of monitoring and feedback over time. The project makes it possible to transparently and easily communicate the extent to which manipulated or natural flows benefit various natural values. Quantitative and visual outputs such as maps will enable environmental managers and the public to easily see which values do and do not receive water (see http://www.veac.vic.gov.au/riverredgumfinal.htm for further details).

Nutritional related aspects of the artificial propagation and larval rearing of Macquarie perch, Macquaria Australasica (Cuvier, 1830)

Studies the underlying role of nutrition in the lack of response of captive fish to hypophysation. Aspects studied include morphological characteristics, histology of ovaries, proximate analysis, fatty and amino acid profiles of oocytes, muscle, liver and diets of wild and tank-reared fish, egg and larval quality, amino acid composition of eggs and larvae at different developmental stages, larval feeding and hormone treatments.

Ecological response to environmental flows in two lowland rivers

Environmental disturbances in the Glenelg and Wimmera Rivers have been exacerbated by low flows. Consequently, environmental flows have been recommended although there is little empirical evidence of their effects. This thesis has shown that environmental flows are potentially beneficial in rivers subject to disturbances such as salinisation and sedimentation.

Climate change impacts and adaptation in Bangladesh : an agent-based approach

Bangladesh exemplifies the complex challenges facing densely populated coastal regions. The
pressures on the country are immense: around 145 million people live within an area of just 145,000 sq-km at
the confluence of three major river systems: the Ganges, the Brahmaputra and the Meghna. While progress
has been made, poverty remains widespread, with around 39% of children under five malnourished. Most of
its land-mass lies below 10m above sea level with considerable areas at sea level, leading to frequent and
prolonged flooding during the monsoons. Sea level rise is leading to more flooding as storm surges rise off
higher sea levels, pushing further inland. Higher sea levels also result in salt-water intrusion into freshwater
coastal aquifers and estuaries, contaminating drinking water and farmland. Warmer ocean waters are also
expected to lead to an increase in the intensity of tropical storms.
Bangladesh depends on the South Asian summer monsoon for most of its rainfall which is expected to
increase, leading to more flooding. Climate scientists are also concerned about the stability of monsoon and
the potential for it to undergo a nonlinear phase shift to a drier regime. Bangladesh faces an additional
hydrological challenge in that the Ganges and Brahmaputra rivers both rise in the Himalaya-Tibetan Plateau
region, where glaciers are melting rapidly. The Intergovernmental Panel on Climate Change (IPCC)
concluded that rapid melting is expected to increase river flows until around the late-2030s, by which time
the glaciers are expected to have shrunk from their 1995 extent of 500,000 sq-km to an expected 100,000 sqkm.
After the 2030s, river flows could drop dramatically, turning the great glacier-fed rivers of Asia into
seasonal monsoon-fed rivers. The IPCC concluded that as a result, water shortages in Asia could affect more
than a billion people by the 2050s. Over the same period, crop yields are expected to decline by up to 30% in
South Asia due to a combination of drought and crop heat stress. Bangladesh is therefore likely to face
substantial challenges in the coming decades.
In order to adequately understand the complex, dynamic, spatial and nonlinear challenges facing Bangladesh,
an integrated model of the system is required. An agent-based model (ABM) permits the dynamic
interactions of the economic, social, political, geographic, environmental and epidemiological dimensions of
climate change impacts and adaptation policies to be integrated via a modular approach. Integrating these
dimensions, including nonlinear threshold events such as mass migrations, or the outbreak of conflicts or
epidemics, is possible to a far greater degree with an ABM than with most other approaches.
We are developing a prototype ABM, implemented in Netlogo, to examine the dynamic impacts on poverty,
migration, mortality and conflict from climate change in Bangladesh from 2001 to 2100. The model employs
GIS and sub-district level census and economic data and a coarse-graining methodology to allow model
statistics to be generated on a national scale from local dynamic interactions. This approach allows a more
realistic treatment of distributed spatial events and heterogeneity across the country. The aim is not to
generate precise predictions of Bangladesh’s evolution, but to develop a framework that can be used for
integrated scenario exploration. This paper represents an initial report on progress on this project. So far the
prototype model has demonstrated the desirability and feasibility of integrating the different dimensions of
the complex adaptive system and, once completed, is intended to be used as the basis for a more detailed
policy-oriented model.

1H-NMR and mass spectrometric characterization of the metabolic response of juvenile Atlantic salmon (Salmo salar) to long-term handling stress

Stressors of various kinds constantly affect fish both in the wild and in culture, examples being acute water temperature and quality changes, predation, handling, and confinement. Known physiological responses of fish to stress such as increases in plasma cortisol and glucose levels, are considered to be adaptive, allowing the animal to cope in the short term. Prolonged exposure to stressors however, has the potential to affect growth, immune function, and survival. Nonetheless, little is known about the mechanisms underlying the long-term stress response. We have investigated the metabolic response of juvenile Atlantic salmon (Salmo salar) to long-term handling stress by analyzing fish plasma via ¹H nuclear magnetic resonance spectroscopy and ultra high performance liquid chromatography–mass spectrometry (UPLC–MS), and comparing results with controls. Analysis of NMR data indicated a difference in the metabolic profiles of control and stressed fish after 1 week of stress with a maximum difference observed after 2 weeks. These differences were associated with stress-induced increases in phosphatidyl choline, lactate, carbohydrates, alanine, valine and trimethylamine-N-oxide, and decreases in low density lipoprotein, very low density lipoprotein, and lipid. UPLC-MS data showed differences at week 2, associated with another set of compounds, tentatively identified on the basis of their mass/charge. Overall the results provided a multi-faceted view of the response of fish to long-term handling stress, indicating that the metabolic disparity between the control and stress groups increased to week 2, but declined by weeks 3 and 4, and revealed several new molecular indicators of long-term stress.

Precocious egg development in the blowfly Calliphora vicina : implications for developmental studies and post-mortem interval estimation

The occurrence of precocious egg development in forensically important calliphorid species has previously been reported; however, the frequency of occurrence in both wild and captive colonies, and the consequent effects on developmental studies and post-m

Use of nest-boxes by the Zebra Finch (Taeniopygia guttata): implications for reproductive success and research

Nest-boxes have been used widely and for many decades in Europe and North America to increase avian reproductive success in species management and conservation programs and to increase the amenability and efficiency with which a species can be studied. Here we describe the establishment of a breeding population of Zebra Finches using nest-boxes in semi-arid, far-western New South Wales, over three breeding seasons (2005–07). The nest-boxes were used readily by Zebra Finches, with a total of 572 breeding attempts recorded in this study. After the introduction of nest-boxes, nearly all breeding attempts were made in these artificial cavities. Zebra Finches breeding in natural nests are prone to high levels of nest predation (>60% in previous studies), but such predation was almost completely eliminated with nest-boxes, with <2% of nests being depredated. Not surprisingly, the reproductive success of pairs breeding in nest-boxes (58% of nests successfully fledged at least one young) was significantly higher than in the natural nests monitored at the same sites in a previous year, and by comparison with previous studies of the same species in other localities across Australia. Our study of the Zebra Finch, a laboratory model used throughout the world, shows the effectiveness of artificial nest-boxes at decreasing levels of predation in the wild and increasing the capacity for research.

Q-fever and Australian farmers: is the health system paying enough attention? A literature review

Introduction: Q-fever is caused by Coxiella burnetii, a Gram-negative bacterium and Rickettsia-like organism. Transmitted from wild and domestic animals to humans, the most common route is inhalation of contaminated dust; however the oral route can be considered as a second pathway. Aim: to understand the reasons behind not including farming workforce and their families in the national vaccinations program. Discussion: In 1977 Q-fever became a notifiable disease nationally. Australia is the only country to have a registered Q-fever vaccine. As a result of the cost of the vaccine, Department of Health and Ageing (DoHA) supply and subsidised program arrangements are based on the active cases count per year (by occupation), rather than for occupations that expose workers to high level of possible "risk". Conclusion: Australian farmers, farm managers, farm workers and their families need to be well educated about Q-fever and included in the national vaccination program.

Sex steroid profiles in zebra finches : effects of reproductive state and domestication

The zebra finch is a common model organism in neuroscience, endocrinology, and ethology. Zebra finches are generally considered opportunistic breeders, but the extent of their opportunism depends on the predictability of their habitat. This plasticity in the timing of breeding raises the question of how domestication, a process that increases environmental predictability, has affected their reproductive physiology. Here, we compared circulating steroid levels in various "strains" of zebra finches. In Study 1, using radioimmunoassay, we examined circulating testosterone levels in several strains of zebra finches (males and females). Subjects were wild or captive (Captive Wild-Caught, Wild-Derived, or Domesticated). In Study 2, using liquid chromatography-tandem mass spectrometry (LC-MS/MS), we examined circulating sex steroid profiles in wild and domesticated zebra finches (males and females). In Study 1, circulating testosterone levels in males differed across strains. In Study 2, six steroids were detectable in plasma from wild zebra finches (pregnenolone, progesterone, dehydroepiandrosterone (DHEA), testosterone, androsterone, and 5α-dihydrotestosterone (5α-DHT)). Only pregnenolone and progesterone levels changed across reproductive states in wild finches. Compared to wild zebra finches, domesticated zebra finches had elevated levels of circulating pregnenolone, progesterone, DHEA, testosterone, androstenedione, and androsterone. These data suggest that domestication has profoundly altered the endocrinology of this common model organism. These results have implications for interpreting studies of domesticated zebra finches, as well as studies of other domesticated species.