29 resultados para New sequencing methods


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Open educational resources (OER) have become new buzzwords in the glocalization of education. While OER are often espoused as enabling educational equity, the reality is not always the case. Looking only at the positives of new educational methods can mask perpetuating challenges, which makes the open aspect of OER a misnomer. Taking an alternative stance, this article critically evaluates the broader notion of OER through the lens of equity. It contends that while equity reasons often underpin the provision of OER, challenges continue to be experienced by some in accessing open digital materials for learning. This article explores some of these issues and argues that equity considerations are fundamental in OER design.

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BACKGROUND: Psychosocial interventions have an important role in promoting recovery in people with persisting psychotic disorders such as schizophrenia. Readily available, digital technology provides a means of developing therapeutic resources for use together by practitioners and mental health service users. As part of the Self-Management and Recovery Technology (SMART) research program, we have developed an online resource providing materials on illness self-management and personal recovery based on the Connectedness-Hope-Identity-Meaning-Empowerment (CHIME) framework. Content is communicated using videos featuring persons with lived experience of psychosis discussing how they have navigated issues in their own recovery. This was developed to be suitable for use on a tablet computer during sessions with a mental health worker to promote discussion about recovery.

METHODS/DESIGN: This is a rater-blinded randomised controlled trial comparing a low intensity recovery intervention of eight one-to-one face-to-face sessions with a mental health worker using the SMART website alongside routine care, versus an eight-session comparison condition, befriending. The recruitment target is 148 participants with a schizophrenia-related disorder or mood disorder with a history of psychosis, recruited from mental health services in Victoria, Australia. Following baseline assessment, participants are randomised to intervention, and complete follow up assessments at 3, 6 and 9 months post-baseline. The primary outcome is personal recovery measured using the Process of Recovery Questionnaire (QPR). Secondary outcomes include positive and negative symptoms assessed with the Positive and Negative Syndrome Scale, subjective experiences of psychosis, emotional symptoms, quality of life and resource use. Mechanisms of change via effects on self-stigma and self-efficacy will be examined.

DISCUSSION: This protocol describes a novel intervention which tests new therapeutic methods including in-session tablet computer use and video-based peer modelling. It also informs a possible low intensity intervention model potentially viable for delivery across the mental health workforce.

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Software Defined Networking (SDN) and Internet of Things (IoT) integration has thrown many critical challenges. Specifically, in heterogeneous SDN-IoT ecosystem, optimized resources utilization and effective management at the control layer is very difficult. This mainly affects the application specific Quality of Service (QoS) and energy consumption of the IoT network. Motivated from this, we propose a new Resource Management (RM) method at the control layer, in distributed SDN-IoT networks. This paper starts with reasons that why at control layer RM is more complex in the SDN-IoT ecosystem. After-that, we highlight motivated examples that necessitate to investigate new RM methods in SDN-IoT context. Further, we propose a novel method to compute controller performance. Theoretical analysis is conducted to prove that the proposed method is better than the existing methods.

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Fabric pilling is a serious problem for the apparel industry. Resistance to pilling is normally tested by simulated accelerated wear and manual assessment of degree of pilling based on a visual comparison of the sample to a set of test images. A number of automated systems based on image analysis have been developed. The authors propose new methods of image analysis based on the two-dimensional wavelet transform to objectively measure the pilling intensity in sample images. Initial work employed the detail coefficients of the two-dimensional discrete wavelet transform (2DDWT) as a measure of the pilling intensity of woven/knitted fabrics.

This method is shown to be robust to image translation and brightness variation. Using the approximation coefficients of the 2DDWT, the method is extended to non-woven pilling image sets. Wavelet texture analysis (WTA) combined with principal components analysis are shown to produce a richer texture description of pilling for analysis and classification. Finally, employing the two-dimensional dual-tree complex wavelet transform as the basis for the WTA feature vector is shown to produce good automated classification on a range of standard pilling image sets.

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This thesis presents two novel algorithms for blind chancel equalization (BCE) and blind source separation (BSS). Beside these, a general framework for global convergent analysis is proposed. Finally, the open problem of equalising a non-irreducible system is answered by the algorithm proposed in this thesis.

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Background: DNA sequencing techniques used to estimate biodiversity, such as DNA barcoding, may reveal cryptic species. However, disagreements between barcoding and morphological data have already led to controversy. Species delimitation should therefore not be based on mtDNA alone. Here, we explore the use of nDNA and bioclimatic modelling in a new species of aquatic beetle revealed by mtDNA sequence data.

Methodology/Principal Findings: The aquatic beetle fauna of Australia is characterised by high degrees of endemism, including local radiations such as the genus Antiporus. Antiporus femoralis was previously considered to exist in two disjunct, but morphologically indistinguishable populations in south-western and south-eastern Australia. We constructed a phylogeny of Antiporus and detected a deep split between these populations. Diagnostic characters from the highly variable nuclear protein encoding arginine kinase gene confirmed the presence of two isolated populations. We then used ecological niche modelling to examine the climatic niche characteristics of the two populations. All results support the status of the two populations as distinct species. We describe the south-western species as Antiporus occidentalis sp.n.

Conclusion/Significance: In addition to nDNA sequence data and extended use of mitochondrial sequences, ecological niche modelling has great potential for delineating morphologically cryptic species. © 2011 Hawlitschek et al.

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Introduction Improving infrastructure to support walking and cycling is often regarded as fundamental to encouraging their widespread uptake. However, there is little evidence that specific provision of this kind has led to a significant increase in walking or cycling in practice, let alone wider impacts such as changes in overall physical activity or carbon emissions. Connect2 is a major new project that aims to promote walking and cycling in the UK by improving local pedestrian and cycle routes. It therefore provides a useful opportunity to contribute new evidence in this field by means of a natural experimental study.

Methods and analysis iConnect is an independent study that aims to integrate the perspectives of public health and transport research on the measurement and evaluation of the travel, physical activity and carbon impacts of the Connect2 programme. In this paper, the authors report the study design and methods for the iConnect core module. This comprised a cohort study of residents living within 5 km of three case study Connect2 projects in Cardiff, Kenilworth and Southampton, supported by a programme of qualitative interviews with key informants about the projects. Participants were asked to complete postal questionnaires, repeated before and after the opening of the new infrastructure, which collected data on demographic and socioeconomic characteristics, travel, car fuel purchasing and physical activity, and potential psychosocial and environmental correlates and mediators of those behaviours. In the absence of suitable no-intervention control groups, the study design drew on heterogeneity in exposure both within and between case study samples to provide for a counterfactual.

Ethics and dissemination The study was approved by the University of Southampton Research Ethics Committee. The findings will be disseminated through academic presentations, peer-reviewed publications and the study website (http://www.iconnect.ac.uk) and by means of a national seminar at the end of the study.

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We present two new avian molecular sexing techniques for nonpasserine and passerine birds (Neognathae), which are more suitable for use with museum specimens than earlier methods. The technique for nonpasserines is based on a new primer (M5) which, in combination with the existing P8 primer, targets a smaller amplicon in the CHD1 sex-linked gene than previously. Primers targeting ATP5A1, an avian sex-linked gene not previously used for sex identification, were developed for passerines. Comprehensive testing across species demonstrated that both primer pairs sex a range of different species within their respective taxonomic groups. Rigorous evaluation of each method within species showed that these permitted sexing of specimens dating from the 1850s. For corn bunting museum specimens, the ATP5A1 method sexed 98% of 63 samples (1857–1966). The M5/P8 CHD1 method was similarly successful, sexing 90% of 384 moorhen specimens from six different museum collections (1855–2001). In contrast, the original P2/P8 CHD1 sexing method only identified the sex of less than half of 111 museum moorhen samples. In addition to dried skin samples, these methods may be useful for other types of material that yield degraded or damaged DNA, and are hence potential new sexing tools for avian conservation genetics, population management and wildlife forensics.

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The majority of existing application profiling techniques ag- gregate and report performance costs by method or call- ing context. Modern large-scale object-oriented applications consist of thousands of methods with complex calling pat- terns. Consequently, when profiled, their performance costs tend to be thinly distributed across many thousands of loca- tions with few easily identifiable optimisation opportunities. However experienced performance engineers know that there are repeated patterns of method calls in the execution of an application that are induced by the libraries, design patterns and coding idioms used in the software. Automati- cally identifying and aggregating costs over these patterns of method calls allows us to identify opportunities to improve performance based on optimising these patterns. We have developed an analysis technique that is able to identify the entry point methods, which we call subsuming methods, of such patterns. Our ofiine analysis runs over previously collected runtime performance data structured in a calling context tree, such as produced by a large number of existing commercial and open source profilers. We have evaluated our approach on the DaCapo bench- mark suite, showing that our analysis significantly reduces the size and complexity of the runtime performance data set, facilitating its comprehension and interpretation. We also demonstrate, with a collection of case studies, that our analysis identifies new optimisation opportunities that can lead to significant performance improvements (from 20% to over 50% improvement in our case studies).

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The complete mitochondrial genome and a set of polymorphic microsatellite markers were identified by 454 pyrosequencing (1/16th of a plate) for the New Caledonian rainforest spider-ant Leptomyrmex pallens. De novo genome assembly recovered the entire mitochondrial genome with mean coverage of 8.9-fold (range 1-27). The mitogenome consists of 15,591 base pairs including 13 protein-coding genes, 2 ribosomal subunit genes, 22 transfer RNAs, and a non-coding AT-rich region. The genome arrangement is typical of insect taxa and very similar to the only other published ant mitogenome from the Solenopsis genus, with the main differences consisting of translocations and inversions of tRNAs. A total of 13 polymorphic loci were also characterized using 41 individuals from a single population in the Aoupinié region, corresponding to workers from 21 nests and 16 foraging workers. We observed moderate genetic variation across most loci (mean number of alleles per locus = 4.50; mean expected heterozygosity = 0.53) with evidence of only two loci deviating significantly from Hardy-Weinberg equilibrium due to null alleles. Marker independence was confirmed with tests for linkage disequilibrium. Most loci cross amplified for three additional Leptomyrmex species. The annotation of the mitogenome and characterization of microsatellite markers will provide useful tools for assessing the colony structure, population genetic patterns, and dispersal strategy of L. pallens in the context of rainforest fragmentation in New Caledonia. Furthermore, this paper confirms a recent line of evidence that comprehensive mitochondrial data can be obtained relatively easily from small next-generation sequencing analyses. Greater synthesis of next-generation sequencing data will play a significant role in expanding the taxonomic representation of mitochondrial genome sequences.

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Growing popularity in parametric urbanism has prompted investigation into the effects digital parametric systems have had on the way we design. This research proposes a new method of Problem Centric System Design, encouraging working methods that are led by both the designer’s aspirations and the requirements of the design problem.