“Reconstruction of Gene Regulatory Network from Expression Profile of Plasma RNA Data of Colorectal Cancer Patients using Soft Computing Techniques”

Microarray data analysis is one of data mining tool which is used to extract meaningful information hidden in biological data. One of the major focuses on microarray data analysis is the reconstruction of gene regulatory network that may be used to provide a broader understanding on the functioning of complex cellular systems. Since cancer is a genetic disease arising from the abnormal gene function, the identification of cancerous genes and the regulatory pathways they control will provide a better platform for understanding the tumor formation and development. The major focus of this thesis is to understand the regulation of genes responsible for the development of cancer, particularly colorectal cancer by analyzing the microarray expression data. In this thesis, four computational algorithms namely fuzzy logic algorithm, modified genetic algorithm, dynamic neural fuzzy network and Takagi Sugeno Kang-type recurrent neural fuzzy network are used to extract cancer specific gene regulatory network from plasma RNA dataset of colorectal cancer patients. Plasma RNA is highly attractive for cancer analysis since it requires a collection of small amount of blood and it can be obtained at any time in repetitive fashion allowing the analysis of disease progression and treatment response.

An Improved Color Video Super-Resolution Using Kernel Regression and Fuzzy Enhancement

An improved color video super-resolution technique using kernel regression and fuzzy enhancement is presented in this paper. A high resolution frame is computed from a set of low resolution video frames by kernel regression using an adaptive Gaussian kernel. A fuzzy smoothing filter is proposed to enhance the regression output. The proposed technique is a low cost software solution to resolution enhancement of color video in multimedia applications. The performance of the proposed technique is evaluated using several color videos and it is found to be better than other techniques in producing high quality high resolution color videos

Studies on Fuzzy Graphs

In this thesis an attempt to develop the properties of basic concepts in fuzzy graphs such as fuzzy bridges, fuzzy cutnodes, fuzzy trees and blocks in fuzzy graphs have been made. The notion of complement of a fuzzy graph is modified and some of its properties are studied. Since the notion of complement has just been initiated, several properties of G and G available for crisp graphs can be studied for fuzzy graphs also. Mainly focused on fuzzy trees defined by Rosenfeld in [10] , several other types of fuzzy trees are defined depending on the acyclicity level of a fuzzy graph. It is observed that there are selfcentered fuzzy trees. Some operations on fuzzy graphs and prove that complement of the union two fuzzy graphs is the join of their complements and complement of the join of two fuzzy graphs is union of their complements. The study of fuzzy graphs made in this thesis is far from being complete. The wide ranging applications of graph theory and the interdisciplinary nature of fuzzy set theory, if properly blended together could pave a way for a substantial growth of fuzzy graph theory.

Fuzzy Absolutes and Related Topics

The study on the fuzzy absolutes and related topics. The different kinds of extensions especially compactification formed a major area of study in topology. Perfect continuous mappings always preserve certain topological properties. The concept of Fuzzy sets introduced by the American Cyberneticist L. A Zadeh started a revolution in every branch of knowledge and in particular in every branch of mathematics. Fuzziness is a kind of uncertainty and uncertainty of a symbol lies in the lack of well-defined boundaries of the set of objects to which this symbol belongs. Introduce an s-continuous mapping from a topological space to a fuzzy topological space and prove that the image of an H-closed space under an s-continuous mapping is f-H closed. Here also proved that the arbitrary product fi and sum of  fi of the s-continuous maps fi are also s-continuous. The original motivation behind the study of absolutes was the problem of characterizing the projective objects in the category of compact spaces and continuous functions.

Some Generalizations of Fuzzy Metrizability

The main purpose of the study is to extent concept of the class of spaces called ‘generalized metric spaces’ to fuzzy context and investigates its properties. Any class of spaces defined by a property possessed by all metric spaces could technically be called as a class of ‘generalized metric spaces’. But the term is meant for classes, which are ‘close’ to metrizable spaces in some under certain kinds of mappings. The theory of generalized metric spaces is closely related to ‘metrization theory’. The class of spaces likes Morita’s M- spaces, Borges’s w-spaces, Arhangelskii’s p-spaces, Okuyama’s  spaces have major roles in the theory of generalized metric spaces. The thesis introduces fuzzy metrizable spaces, fuzzy submetrizable spaces and proves some characterizations of fuzzy submetrizable spaces, and also the fuzzy generalized metric spaces like fuzzy w-spaces, fuzzy Moore spaces, fuzzy M-spaces, fuzzy k-spaces, fuzzy -spaces study of their properties, prove some equivalent conditions for fuzzy p-spaces. The concept of a network is one of the most useful tools in the theory of generalized metric spaces. The -spaces is a class of generalized metric spaces having a network.

Fuzzy Topological Games and Related Topics

The main purpose of study is to extend the concept of the topological game G(K, X) and some other kinds of games into fuzzy topological games and to obtain some results regarding them. Owing to the fact that topological games have plenty of applications in covering properties, it made an attempt to explore some inter relations of games and covering properties in fuzzy topological spaces. Even though the main focus is on fuzzy para-meta compact spaces and closure preserving shading families, some brief sketches regarding fuzzy P-spaces and Shading Dimension is also provided. In a topological game players choose some objects related to the topological structure of a space such as points, closed subsets, open covers etc. More over the condition on a play to be winning for a player may also include topological notions such as closure, convergence, etc. It turns out that topological games are related to the Baire property, Baire spaces, Completeness properties, Convergence properties, Separation properties, Covering and Base properties, Continuous images, Suslin sets, Singular spaces etc.

A Study Of Frames In The Fuzzy And Intuitionist Fuzzy Contexts

The fuzzy set theory has a wider scope of applicability than classical set theory in solving various problems. Fuzzy set theory in the last three decades as a formal theory which got formalized by generalizing the original ideas and concepts in classical mathematical areas and as a very powerful modeling language, that can cope with a large fraction of uncertainties of real life situations. In Intuitionistic Fuzzy sets a new component degree of non membership in addition to the degree of membership in the case of fuzzy sets with the requirement that their sum be less than or equal to one. The main objective of this thesis is to study frames in Fuzzy and Intuitionistic Fuzzy contexts. The thesis proved some results such as ifµ is a fuzzy subset of a frame F, then µ is a fuzzy frame of F iff each non-empty level subset µt of µ is a subframe of F, the category Fuzzfrm of fuzzy frames has products and the category Fuzzfrm of fuzzy frames is complete. It define a fuzzy-quotient frame of F to be a fuzzy partition of F, that is, a subset of IF and having a frame structure with respect to new operations and study the notion of intuitionistic fuzzy frames and obtain some results and introduce the concept of Intuitionistic fuzzy Quotient frames. Finally it establish the categorical link between frames and intuitionistic fuzzy topologies.

Box Products in Fuzzy Topological Spaces and Related Topics

The topology as the product set with a base chosen as all products of open sets in the individual spaces. This topology is known as box topology. The main objective of this study is to extend the concept of box products to fuzzy box products and to obtain some results regarding them. Owing to the fact that box products have plenty of applications in uniform and covering properties, here made an attempt to explore some inter relations of fuzzy uniform properties and fuzzy covering properties in fuzzy box products. Even though the main focus is on fuzzy box products, some brief sketches regarding hereditarily fuzzy normal spaces and fuzzy nabla product is also provided. The main results obtained include characterization of fuzzy Hausdroffness and fuzzy regularity of box products of fuzzy topological spaces. The investigation of the completeness of fuzzy uniformities in fuzzy box products proved that a fuzzy box product of spaces is fuzzy topologically complete if each co-ordinate space is fuzzy topologically complete. The thesis also prove that the fuzzy box product of a family of fuzzy α-paracompact spaces is fuzzy topologically complete. In Fuzzy box product of hereditarily fuzzy normal spaces, the main result obtained is that if a fuzzy box product of spaces is hereditarily fuzzy normal ,then every countable subset of it is fuzzy closed. It also deals with the notion of fuzzy nabla product of spaces which is a quotient of fuzzy box product. Here the study deals the relation connecting fuzzy box product and fuzzy nabla product

Study on Fuzzy Ordered FuzzyTopological Spaces

In this study we combine the notions of fuzzy order and fuzzy topology of Chang and define fuzzy ordered fuzzy topological space. Its various properties are analysed. Product, quotient, union and intersection of fuzzy orders are introduced. Besides, fuzzy order preserving maps and various fuzzy completeness are investigated. Finally an attempt is made to study the notion of generalized fuzzy ordered fuzzy topological space by considering fuzzy order defined on a fuzzy subset.

Consequence modelling,vulnerability assessment and fuzzy fault tree analysis of hazardous storages in an industrial area

The hazards associated with major accident hazard (MAH) industries are fire, explosion and toxic gas releases. Of these, toxic gas release is the worst as it has the potential to cause extensive fatalities. Qualitative and quantitative hazard analyses are essential for the identitication and quantification of the hazards associated with chemical industries. This research work presents the results of a consequence analysis carried out to assess the damage potential of the hazardous material storages in an industrial area of central Kerala, India. A survey carried out in the major accident hazard (MAH) units in the industrial belt revealed that the major hazardous chemicals stored by the various industrial units are ammonia, chlorine, benzene, naphtha, cyclohexane, cyclohexanone and LPG. The damage potential of the above chemicals is assessed using consequence modelling. Modelling of pool fires for naphtha, cyclohexane, cyclohexanone, benzene and ammonia are carried out using TNO model. Vapor cloud explosion (VCE) modelling of LPG, cyclohexane and benzene are carried out using TNT equivalent model. Boiling liquid expanding vapor explosion (BLEVE) modelling of LPG is also carried out. Dispersion modelling of toxic chemicals like chlorine, ammonia and benzene is carried out using the ALOHA air quality model. Threat zones for different hazardous storages are estimated based on the consequence modelling. The distance covered by the threat zone was found to be maximum for chlorine release from a chlor-alkali industry located in the area. The results of consequence modelling are useful for the estimation of individual risk and societal risk in the above industrial area.Vulnerability assessment is carried out using probit functions for toxic, thermal and pressure loads. Individual and societal risks are also estimated at different locations. Mapping of threat zones due to different incident outcome cases from different MAH industries is done with the help of Are GIS.Fault Tree Analysis (FTA) is an established technique for hazard evaluation. This technique has the advantage of being both qualitative and quantitative, if the probabilities and frequencies of the basic events are known. However it is often difficult to estimate precisely the failure probability of the components due to insufficient data or vague characteristics of the basic event. It has been reported that availability of the failure probability data pertaining to local conditions is surprisingly limited in India. This thesis outlines the generation of failure probability values of the basic events that lead to the release of chlorine from the storage and filling facility of a major chlor-alkali industry located in the area using expert elicitation and proven fuzzy logic. Sensitivity analysis has been done to evaluate the percentage contribution of each basic event that could lead to chlorine release. Two dimensional fuzzy fault tree analysis (TDFFTA) has been proposed for balancing the hesitation factor invo1ved in expert elicitation .