55 resultados para Biologically inspired

em Doria (National Library of Finland DSpace Services) - National Library of Finland, Finland


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In this thesis a total of 86 compounds containing the hetero atoms oxygen and nitrogen were studied under electron ionization mass spectrometry (EIMS). These compounds are biologically active and were synthesized by various research groups. The main attention of this study was paid on the fragmentations related to different tautomeric forms of 2- phenacylpyridines, 2-phenacylquinolines, 8-aryl-3,4-dioxo-2H,8H-6,7-dihydroimidazo- [2,1-c][1,2,4]triazines and aryl- and benzyl-substituted 2,3-dihydroimidazo[1,2-a]pyrimidine-5,7-(1H,6H)-diones. Also regio/stereospecific effects on fragmentations of pyrrolo- and isoindoloquinazolinones and naphthoxazine, naphthpyrrolo-oxazinone and naphthoxazino-benzoxazine derivatives were screened. Results were compared with NMR data, when available. The first part of thesis consists of theory and literature review of different types of tautomerism and fragmentation mechanisms in EIMS. The effects of tautomerism in biological systems are also briefly reviewed. In the second part of the thesis the own results of the author, based on six publications,are discussed. For 2-phenacylpyridines and 2-phenacylquinolines the correlation of different Hammett substituent constants to the relative abundances (RA) or total ion currents (% TIC) of selected ions were investigated. Although it was not possible to assign most of the ions formed unambiguously to the different tautomers, the linear fits of their RAs and % TICs can be related to changing contributions of different tautomeric forms. For dioxoimidazotriazines and imidazopyrimidinediones the effects of substituents were rather weak. The fragmentations were also found useful for obtaining structural information. Some stereoisomeric pairs of pyrrolo- and isoindoloquinazolines and regiomeric pairs of naphtoxazine derivatives showed clear differences in thir mass spectra. Some mechanisms are suggested for their fragmentations.

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In 1859, Charles Darwin published his theory of evolution by natural selection, the process occurring based on fitness benefits and fitness costs at the individual level. Traditionally, evolution has been investigated by biologists, but it has induced mathematical approaches, too. For example, adaptive dynamics has proven to be a very applicable framework to the purpose. Its core concept is the invasion fitness, the sign of which tells whether a mutant phenotype can invade the prevalent phenotype. In this thesis, four real-world applications on evolutionary questions are provided. Inspiration for the first two studies arose from a cold-adapted species, American pika. First, it is studied how the global climate change may affect the evolution of dispersal and viability of pika metapopulations. Based on the results gained here, it is shown that the evolution of dispersal can result in extinction and indeed, evolution of dispersalshould be incorporated into the viability analysis of species living in fragmented habitats. The second study is focused on the evolution of densitydependent dispersal in metapopulations with small habitat patches. It resulted a very surprising unintuitive evolutionary phenomenon, how a non-monotone density-dependent dispersal may evolve. Cooperation is surprisingly common in many levels of life, despite of its obvious vulnerability to selfish cheating. This motivated two applications. First, it is shown that density-dependent cooperative investment can evolve to have a qualitatively different, monotone or non-monotone, form depending on modelling details. The last study investigates the evolution of investing into two public-goods resources. The results suggest one general path by which labour division can arise via evolutionary branching. In addition to applications, two novel methodological derivations of fitness measures in structured metapopulations are given.

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Tutkimuksen tavoitteena oli luoda yleiskuva muuttuvasta televisioliiketoiminnasta ja tuoda esille niin muutokseen vaikuttavat tekijät kuin muutosta seuraavat kehityssuunnat. Tämän lisäksi pyrittiin hahmottamaan mahdollisia televisiotoimialan tulevaisuuden kuvia. Aiheen laajuuden takia tutkimus rajattiin koskemaan Suomen televisiotoimialaa. Tutkimuksessa selvitettiin haastatteluiden, artikkelien ja tutkimusraporttien pohjalta tärkeimmät muutokseen vaikuttavat tekijät ja kehityssuunnat. Tämän lisäksi arvioitiin niin kuluttajien vaikutusta muutokseen kuin muutoksen vaikutusta arvoketjuun. Tulosten pohjalta rakennettiin kolme tulevaisuuden skenaariota ja lopuksi liiketoimintamalleja arvioitiinkussakin skenaariossa. Skenaarioiden teemat olivat 'yhteiskunta ohjaa kehitystä', 'jakeluyhtiöt hallitsevat toimialaa- ja -kuluttaja on kuningas'. Kolmas skenaario, joka herätti eniten keskustelua ja mielenkiintoa, nousiselvästi esiin kahdesta muusta.

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This thesis gives an overview of the use of the level set methods in the field of image science. The similar fast marching method is discussed for comparison, also the narrow band and the particle level set methods are introduced. The level set method is a numerical scheme for representing, deforming and recovering structures in an arbitrary dimensions. It approximates and tracks the moving interfaces, dynamic curves and surfaces. The level set method does not define how and why some boundary is advancing the way it is but simply represents and tracks the boundary. The principal idea of the level set method is to represent the N dimensional boundary in the N+l dimensions. This gives the generality to represent even the complex boundaries. The level set methods can be powerful tools to represent dynamic boundaries, but they can require lot of computing power. Specially the basic level set method have considerable computational burden. This burden can be alleviated with more sophisticated versions of the level set algorithm like the narrow band level set method or with the programmable hardware implementation. Also the parallel approach can be used in suitable applications. It is concluded that these methods can be used in a quite broad range of image applications, like computer vision and graphics, scientific visualization and also to solve problems in computational physics. Level set methods and methods derived and inspired by it will be in the front line of image processing also in the future.

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Biologisessa jätteenkäsittelyssä syntyvää humusmassaa voidaan käyttää maanparannusaineena ja yleisenä lannoitusaineena. Termisellä kuivauksella saadaan humuksen kuiva-ainepitoisuutta nostettua mekaanisen kuivauksen jälkeen, jolloin sen tuotteistettavuus ja kuljetettavuus paranevat pienentyneen painon ja tilavuuden myötä. Kirjallisuusosassa on esitetty yleisiä termisen kuivauksen periaatteita sekä käsitelty lähemmin humuksen kuivausta. Lisäksi termisen kuivauksen hygienisoivaa vaikutusta on esitelty kirjallisuusosan lopussa. Tutkimusosassa luotiin tietokonepohjainen malli MK Protech Oy:n kehittämälle Traypack-kuivaimelle. Mallin luomisessa käytettiin apuna suoritettujen pilot-ajojen tuloksia sekä kirjallisuudesta saatuja tietoja. Malli sisältää kuivauksen aine- ja energiataseet sekä kuivaimen ja sen apulaitteiden mitoituksen. Sen lisäksi malli tulostaa erillisinä kokonaisuuksina prosessin laiteluettelon, investointikustannuslaskelman ja elinkaarianalyysin. Lisäksi tutkimusosassa laskettiin mallin avulla Rayongin kaupunkiin Thaimaahan rakenteilla olevan jätteenkäsittelylaitoksen tarpeeseen soveltuvan kuivaimen mitoitus- ja käyttötiedot sekä tarkasteltiin kuivaimen taloudellista kannattavuutta. Laitoksessa kuivataan 2080 kg/h kuiva-ainepitoisuudeltaan 30 % humusta loppukuiva-ainepitoisuuteen 50 %. Tarvittavaksi lämpötehoksi kuivaimeen saatiin 3,9 MW. Tästä 2,0 MW tarvitaan uutta systeemiin tuotavaa kuivauskaasua. Tällöin laitoksen investointikustannuksiksi saatiin 359 000 EUR. Laitoksen käyttökustannuksiksi saatiin 40 440 EUR vuodessa.

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Tämän diplomityön tavoitteena on arvioida Etelä-Karjalan nykyisten ja mahdollisten tulevaisuuden jätteenkäsittelymenetelmien kykyä saavuttaa Euroopan Unionin ja Suomen kansalliset yhdyskuntajätettä koskevat tavoitteet. Jätteenkäsittelyvaihtoeh-doissa on erityisesti otettu huomioon sivutuoteasetuksen vaikutukset. Tutkimuksessa määritetään Etelä-Karjalassa muodostuvat biohajoavan ja muun yhdyskuntajätteen kertymät ja niiden nykyinen käsittelyn jakauma. Etelä-Karjalassa syntyi vuonna 2003 noin 56 000 tonnia yhdyskuntajätettä, josta 43 000 tonnia oli biohajoavaa. Biohajoavasta jätteestä 29 % sijoitettiin kaatopaikalle, 29 % kierrätettiin, 30 % ohjautui biologiseen hyödyntämiseen ja 12 % käytettiin energiana. Kokonaisyhdyskuntajätekertymästä 61 % hyödynnettiin. Kaatopaikkadirektiivissä on asetettu tavoitteet biohajoavan yhdyskuntajätteen kaatopaikkasijoittamisen vähentämiselle. Vuonna 2009 kaatopaikalle saa sijoittaa 50 % ja vuonna 2016 enää 35 % vuonna 1995 muodostuneesta biohajoavasta yhdyskuntajätekertymästä. Jätemäärien kasvu huomioon ottaen sekä nykyisellä jätehuoltojärjestelmällä että mahdollisilla tulevaisuuden käsittelymenetelmillä Etelä-Karjalassa saavutetaan tai jopa ylitetään kaatopaikkadirektiivissä asetetut tavoitteet.

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Tutkielman tavoitteena on tutkia, miten rakentaa yritykselle toimiva kunnossapidon kustannusten ja suorituskyvyn raportointimalli ohjauksen tarpeisiin. Työn aihepiiri on lähtöisin case-yrityksen käytännön tarpeista luoda yhtenäinen kunnossapidon raporttimalli. Ongelmaa lähestytään kirjallisuuden perusteella, jonka avulla analysoidaan ensinnäkin talouden ohjauksen tehtäviä ja menetelmiä sekä johdon tiedon tarpeita. Toiseksi analysointi kattaa kunnossapidon tavoitteiden ja vaikutusten käsittelyn. Kunnossapidolla nähdään olevan merkittävä vaikutus tuotantoon sekä tätä kautta myös yrityksen kannattavuuteen. Kirjallisuuden perusteella työssä on luotu seitsenportainen kunnossapitoraportoinnin prosessimalli. Tutkielman empiriaosa kattaa case-yrityksen ylemmän johdon, tehtaanjohtajien, kunnossapitopäälliköiden sekä taloushallinnon business controllereiden haastatteluja näiden kunnossapidon raportointiin liittyvien tiedon tarpeiden selvittämiseksi. Haastattelujen perusteella on luotu malliehdotus kunnossapidon kustannusten ja suorituskyvyn raportoimiseksi. Työ on tutkimusotteeltaan konstruktiivinen.

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The topic of this study is the language of the educational policies of the British Labour party in the General Election manifestos between the years 1983-2005. The twenty-year period studied has been a period of significant changes in world politics, and in British politics, especially for the Labour party. The emergence educational policy as a vote-winner of the manifestos of the nineties has been noteworthy. The aim of the thesis is two-fold: to look at the structure of the political manifesto as an example of genre writing and to analyze the content utilizing the approach of critical discourse analysis. Furthermore, the aim of this study is not to pinpoint policy positions but to look at what is the image that the Labour Party creates of itself through these manifestos. The analysis of the content is done by a method of close-reading. Based on the findings, the methodology for the analysis of the content was created. This study utilized methodological triangulation which means that the material is analyzed from several methodological aspects. The aspects used in this study are ones of lexical features (collocation, coordination, euphemisms, metaphors and naming), grammatical features (thematic roles, tense, aspect, voice and modal auxiliaries) and rhetoric (Burke, Toulmin and Perelman). From the analysis of the content a generic description is built. By looking at the lexical, grammatical and rhetorical features a clear change in language of the Labour Party can be detected. This change is foreshadowed already in the 1992 manifesto but culminates in the 1997 manifesto which would lead Labour to a landslide victory in the General Election. During this twenty-year period Labour has moved away from the old commitments and into the new sphere of “something for everybody”. The pervasiveness of promotional language and market inspired vocabulary into the sphere of manifesto writing is clear. The use of the metaphors seemed to be the tool for the creation of the image of the party represented through the manifestos. A limited generic description can be constructed from the findings based on the content and structure of the manifestos: especially more generic findings such as the use of the exclusive we, the lack of certain anatomical parts of argument structure, the use of the future tense and the present progressive aspect can shed light to the description of the genre of manifesto writing. While this study is only the beginning, it proves that the combination of looking at the lexical, grammatical and rhetorical features in the study of manifestos is a promising one.

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We expose the ubiquitous interaction between an information screen and its’ viewers mobile devices, highlights the communication vulnerabilities, suggest mitigation strategies and finally implement these strategies to secure the communication. The screen infers information preferences’ of viewers within its vicinity transparently from their mobile devices over Bluetooth. Backend processing then retrieves up-to-date versions of preferred information from content providers. Retrieved content such as sporting news, weather forecasts, advertisements, stock markets and aviation schedules, are systematically displayed on the screen. To maximise users’ benefit, experience and acceptance, the service is provided with no user interaction at the screen and securely upholding preferences privacy and viewers anonymity. Compelled by the personal nature of mobile devices, their contents privacy, preferences confidentiality, and vulnerabilities imposed by screen, the service’s security is fortified. Fortification is predominantly through efficient cryptographic algorithms inspired by elliptic curves cryptosystems, access control and anonymity mechanisms. These mechanisms are demonstrated to attain set objectives within reasonable performance.

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Construction of multiple sequence alignments is a fundamental task in Bioinformatics. Multiple sequence alignments are used as a prerequisite in many Bioinformatics methods, and subsequently the quality of such methods can be critically dependent on the quality of the alignment. However, automatic construction of a multiple sequence alignment for a set of remotely related sequences does not always provide biologically relevant alignments.Therefore, there is a need for an objective approach for evaluating the quality of automatically aligned sequences. The profile hidden Markov model is a powerful approach in comparative genomics. In the profile hidden Markov model, the symbol probabilities are estimated at each conserved alignment position. This can increase the dimension of parameter space and cause an overfitting problem. These two research problems are both related to conservation. We have developed statistical measures for quantifying the conservation of multiple sequence alignments. Two types of methods are considered, those identifying conserved residues in an alignment position, and those calculating positional conservation scores. The positional conservation score was exploited in a statistical prediction model for assessing the quality of multiple sequence alignments. The residue conservation score was used as part of the emission probability estimation method proposed for profile hidden Markov models. The results of the predicted alignment quality score highly correlated with the correct alignment quality scores, indicating that our method is reliable for assessing the quality of any multiple sequence alignment. The comparison of the emission probability estimation method with the maximum likelihood method showed that the number of estimated parameters in the model was dramatically decreased, while the same level of accuracy was maintained. To conclude, we have shown that conservation can be successfully used in the statistical model for alignment quality assessment and in the estimation of emission probabilities in the profile hidden Markov models.

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Throughout history indigo was derived from various plants for example Dyer’s Woad (Isatis tinctoria L.) in Europe. In the 19th century were the synthetic dyes developed and nowadays indigo is mainly synthesized from by-products of fossil fuels. Indigo is a so-called vat dye, which means that it needs to be reduced to its water soluble leucoform before dyeing. Nowadays, most of the industrial reduction is performed chemically by sodium dithionite. However, this is considered environmentally unfavourable because of waste waters contaminating degradation products. Therefore there has been interest to find new possibilities to reduce indigo. Possible alternatives for the application of dithionite as the reducing agent are biologically induced reduction and electrochemical reduction. Glucose and other reducing sugars have recently been suggested as possible environmentally friendly alternatives as reducing agents for sulphur dyes and there have also been interest in using glucose to reduce indigo. In spite of the development of several types of processes, very little is known about the mechanism and kinetics associated with the reduction of indigo. This study aims at investigating the reduction and electrochemical analysis methods of indigo and give insight on the reduction mechanism of indigo. Anthraquinone as well as it’s derivative 1,8-dihydroxyanthraquinone were discovered to act as catalysts for the glucose induced reduction of indigo. Anthraquinone introduces a strong catalytic effect which is explained by invoking a molecular “wedge effect” during co-intercalation of Na+ and anthraquinone into the layered indigo crystal. The study includes also research on the extraction of plant-derived indigo from woad and the examination of the effect of this method to the yield and purity of indigo. The purity has been conventionally studied spectrophotometrically and a new hydrodynamic electrode system is introduced in this study. A vibrating probe is used in following electrochemically the leuco-indigo formation with glucose as a reducing agent.

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Energiatehokkuus sekä ilmastonmuutos ovat aiheuttaneet pyrkimyksen vähentää kokonaisenergiankulutuksia erilaisissa rakennuksissa. Lämmitysjärjestelmissä tämä on näkynyt voimakkaana lämpöpumppumäärien kasvuna. Lämpöpumput vaikuttavat erilaisissa rakennus- ja lämmitystyypeissä myös sähköenergiankulutukseen. Lämpöpumppujen käytöstä saadaan eniten hyötyä lämmityskustannuksiin sähkölämmitteisissä rakennuksissa. Seurauksena on, että tällaisen rakennuksen sähkönkulutus ja siten myös sähkölasku pienenevät. Toisaalta muihin kuin sähkölämmitteisiin rakennuksiin asennettu lämpöpumppu kasvattaa sähköenergiankulutusta. Lämpöpumppuihin integroitu jäähdytysominaisuus myös tavallisesti lisää sähkönkulutusta. Tämän tutkimuksen tarkoituksena on selvittää, kuinka lämpöpumput vaikuttavat sähköenergiankulutukseen. Vaikutuksia tutkitaan sähköverkkoyhtiöiden kannalta sähköenergian ja liikevaihdon osalta. Tarkastelussa käytetään neljää yleisintä lämpöpumpputyyppiä, ja niiden toimintaa verrataan eri rakennustyyppien lämmitysjärjestelmiin. Työssä käsitellään lämpöpumppujen toimintaa ja käytettävyyttä muiden lämmitysmenetelmien korvaajina tai lisänä. Tämän kirjallisen työn lisäksi on tehty laskentaohjelma, joka on perusteena työssä esitetyille tuloksille. Sen tarkoituksena on selvittää lämpöpumppujen vaikutukset sähköverkkoliiketoimintaan energiayhtiöissä. Vaikutukset yksittäiseen energiayhtiöön ovat eniten riippuvaisia lämpöpumppujen asennuskohteista, lämpöpumppujen toiminnasta ja lämpöpumpputyypistä. Kuluttajat tulevat määräämään vaikutusten suuruuden, koska lämpöpumppujen lukumäärällä ja käytöllä on sähköenergiankulutukseen huomattava merkitys. Vaikutus sähköenergiaan energiayhtiöiden kannalta voi yleisesti ottaen olla 2020-luvulle mentäessä merkittävä. Tutkittavassa verkkoyhtiössä vaikutuksen sähköenergiaan arvioidaan olevan 10 % luokkaa yhdeltä vuodelta verrattuna tämän päivän kokonaissähköenergiankulutukseen. Vaikutus verkkoliikevaihtoon on arviolta puolet pienempi. Tällaiset tulokset edellyttävät lämpöpumppumäärän moninkertaistumista nykyisestä, mikä on myös odotettavissa.

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Characterizing Propionibacterium freudenreichii ssp. shermanii JS and Lactobacillus rhamnosus LC705 as a new probiotic combination: basic properties of JS and pilot in vivo assessment of the combination Each candidate probiotic strain has to have the documentation for the proper identification with current molecular tools, for the biological properties, for the safety aspects and for the health benefits in human trials if the intention is to apply the strain as health promoting culture in the commercial applications. No generalization based on species properties of an existing probiotic are valid for any novel strain, as strain specific differences appear e.g. in the resistance to GI tract conditions and in health promoting benefits (Madsen, 2006). The strain evaluation based on individual strain specific probiotic characteristics is therefore the first key action for the selection of the new probiotic candidate. The ultimate goal in the selection of the probiotic strain is to provide adequate amounts of active, living cells for the application and to guarantee that the cells are physiologically strong enough to survive and be biologically active in the adverse environmental conditions in the product and in GI tract of the host. The in vivo intervention studies are expensive and time consuming; therefore it is not rational to test all the possible candidates in vivo. Thus, the proper in vitro studies are helping to eliminate strains which are unlikely to perform well in vivo. The aims of this study were to characterize the strains of Propionibacterium freudenreichii ssp. shermanii JS and Lactobacillus rhamnosus LC705, both used for decades as cheese starter cultures, for their technological and possible probiotic functionality applied in a combined culture. The in vitro studies of Propionibacterium freudenreichii ssp. shermanii JS focused on the monitoring of the viability rates during the acid and bile treatments and on the safety aspects such as antibiotic susceptibility and adhesion. The studies with the combination of the strains JS and LC705 administered in fruit juices monitored the survival of the strains JS and LC705 during the GI transit and their effect on gut wellbeing properties measured as relief of constipation. In addition, safety parameters such as side effects and some peripheral immune parameters were assessed. Separately, the combination of P. freudenreichii ssp. shermanii JS and Lactobacillus rhamnosus LC705 was evaluated from the technological point of view as a bioprotective culture in fermented foods and wheat bread applications. In this study, the role ofP. freudenreichii ssp. shermanii JS as a candidate probiotic culture alone and in a combination with L. rhamnosus LC705 was demonstrated. Both strains were transiently recovered in high numbers in fecal samples of healthy adults during the consumption period. The good survival through the GI transit was proven for both strains with a recovery rate from 70 to 80% for the JS strain and from 40 to 60% for the LC705 strain from the daily dose of 10 log10 CFU. The good survival was shown from the consumption of fruit juices which do not provide similar matrix protection for the cells as milk based products. The strain JS did not pose

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Virtual screening is a central technique in drug discovery today. Millions of molecules can be tested in silico with the aim to only select the most promising and test them experimentally. The topic of this thesis is ligand-based virtual screening tools which take existing active molecules as starting point for finding new drug candidates. One goal of this thesis was to build a model that gives the probability that two molecules are biologically similar as function of one or more chemical similarity scores. Another important goal was to evaluate how well different ligand-based virtual screening tools are able to distinguish active molecules from inactives. One more criterion set for the virtual screening tools was their applicability in scaffold-hopping, i.e. finding new active chemotypes. In the first part of the work, a link was defined between the abstract chemical similarity score given by a screening tool and the probability that the two molecules are biologically similar. These results help to decide objectively which virtual screening hits to test experimentally. The work also resulted in a new type of data fusion method when using two or more tools. In the second part, five ligand-based virtual screening tools were evaluated and their performance was found to be generally poor. Three reasons for this were proposed: false negatives in the benchmark sets, active molecules that do not share the binding mode, and activity cliffs. In the third part of the study, a novel visualization and quantification method is presented for evaluation of the scaffold-hopping ability of virtual screening tools.

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The present study investigates the spatial and spectral discrimination potential for grassland patches in the inner Turku Archipelago using Landsat Thematic Mapper satellite imagery. The spatial discrimination potential was computed through overlay analysis using official grassland parcel data and a hypothetical 30 m resolution satellite image capturing the site. It found that Landsat TM imagery’s ability to retrieve pure or near-pure pixels (90% purity or more) from grassland patches smaller than 1 hectare was limited to 13% success, compared to 52% success when upscaling the resolution to 10 x 10 m pixel size. Additionally, the perimeter/area patch metric is proposed as a predictor for the suitability of the spatial resolution of input imagery. Regression analysis showed that there is a strong negative correlation between a patch’s perimeter/area ratio and its pure pixel potential. The study goes on to characterise the spectral response and discrimination potential for the five main grassland types occurring in the study area: recreational grassland, traditional pasture, modern pasture, fodder production grassland and overgrown grassland. This was done through the construction of spectral response curves, a coincident spectral plot and a contingency matrix as well as by calculating the transformed divergence for the spectral signatures, all based on training samples from the TM imagery. Substantial differences in spectral discrimination potential between imagery from the beginning of the growing season and the middle of summer were found. This is because the spectral responses for these five grassland types converge as the peak of the growing season draws nearer. Recreational grassland shows a consistent discrimination advantage over other grassland types, whereas modern pasture is most easily confused. Traditional pasture land, perhaps the most biologically valuable grassland type, can be spectrally discriminated from other grassland types with satisfactory success rates provided early growing season imagery is used.