Medira. Terveyden jäljillä – Turusta maailman turuille

Keväällä 1968 istui joukko Turun yliopiston nuoria assistentteja aika ajoin iltaa turkulaisessa kulttuuriravintola Hämeenportissa. Maailma ja erityisesti valtakunnan tiede- ja tutkimuspolitiikka pantiin uuteen järjestykseen. Joukko halusi porautua lääketieteen (medicina) juuriin (radix) ja omaksui ryhmälleen nimen Medira. Ryhmä julkaisi ajatuksensa Duodecim-aikakauskirjan erikoisnumerossa syksyllä 1970. Valmistuttuaan ryhmä hajosi pääosin yliopistoihin eri puolille Suomea. Mediran jäsenet pääsivät toteuttamaan ajatuksiaan, monet tärkeissä tehtävissä yliopistoissaan ja maan tiede- ja tutkimuspolitiikassa. Medira-ryhmään kuuluvat seuraavat nimekkäät lääketieteen, genetiikan ja terveystutkimuksen tuntijat: Eino Heikkinen, Markku T. Hyyppä, Osmo Hänninen, Johannes Lehtonen, Petter Portin, Jorma Rantanen, Risto Santti, Seppo Turunen sekä Hannu Vuori. Nyt, neljän vuosikymmenen mentyä ryhmä päätti kokoontua jälleen ja tarkastella kuluneen ajan saavutuksia - ja myös pettymyksiä - nuorena omaksumiensa radikaalien tavoitteiden sekä ajan mittaan kertyneen vankan kokemuksensa ristivalotuksessa. Nämä pohdinnat ryhmä päätti saattaa kirjan muotioon. Kirja-Auroran kustantama ja Hannu Vuoren toimittama kirja julkistettiin Tieteiden ilta -festivaalin yhteydessä torstaina 18.8.2011. Medira. Terveyden jäljillä - Turusta maailman turuille tarjoaa tuoreen ja mielenkiintoisen näkökulman eräisiin tämän päivän keskeisiin tiede- ja tutkimuspolitiikan ja terveyden edistämisen kysymyksiin.

Ammoniumkloridi Porvoon ja Naantalin jalostamoiden vetyverkoissa

Tässä työssä on käsitelty ammoniumkloridia Porvoon ja Naantalin jalostamoiden vetyverkoissa. Tietoa ammoniumkloridin aiheuttamista ongelmista ja niihin vaikuttavista tekijöistä on kerätty ja niiden pohjalta on pyritty löytämään keinoja, joilla ongelmaa voidaan vähentää tai poistaa. Kirjallisuusosassa on käsitelty ammoniumkloridia, sen aiheuttamaa korroosiota ja materiaalien ammoniumkloridikestävyyttä. Lisäksi kirjallisuusosassa on käsitelty ammoniumkloridin muodostumiseen tarvittavan vetykloridin määritysmenetelmiä sekä ammonium- ja kloridi-ionien määritysmenetelmiä. Työn soveltavassa osassa kerättiin tietoa ammoniumkloridin aiheuttamista ongelmista ja ammoniumkloridin muodostumiseen vaikuttavista tekijöistä. Lisäksi Porvoon jalostamolla suoritettiin mittauksia, joilla määritettiin ammoniakki- ja vetykloridipitoisuuksia vetyvirroista. Tulosten perusteella saatiin käsitys jalostamon ammoniumkloridiongelman nykytilanteesta ja tutkittiin ammoniumkloridia muodostavien ammoniakin ja vetykloridin lähteitä. Lisäksi keinoja vähentää ammoniumkloridin muodostumista tunnistettiin.

Characterization of novel genes predominantly expressed in the epididymis – from genome analyses to genetically modified mice

In mammals, post-testicular sperm maturation taking place in the epididymis is required for the spermatozoa to acquire the abilities required to fertilize the egg in vivo. The epididymal epithelial cells secrete proteins and other small molecules into the lumen, where they interact with the spermatozoa and enable necessary maturational changes. In this study different in silico, in vitro and in vivo approaches were utilized in order to find novel genes responsible for the function of the epididymis and post-testicular sperm maturation in the mouse. Available online genomic databases were analyzed to identify genes potentially expressed in the epididymis, gene expression profiling was performed by studying their expression in different mouse tissues, and significance of certain genes to fertility was assessed by generating genetically modified mouse models. A recently discovered Pate (prostate and testis expression) gene family was found to be predominantly expressed in the epididymis. It represents one of the largest known gene families expressed in the epididymis, and the members code for proteins potentially involved in defense against microorganisms. Through genetically modified mouse models CRISP4 (cysteine-rich secretory protein 4) was identified to regulate sperm acrosome reaction, and BMYC to inhibit the expression of the Myc proto-oncogene in the developing testis. A mouse line expressing iCre recombinase specifically in the epididymis was also generated. This model can be used to generate conditional, epididymis-specific knock-out models, and will be a valuable tool in fertility studies.

Evolution of Bordetella pertussis post vaccination

Evolution of Bordetella pertussis post vaccination Whooping cough or pertussis is caused by the gram-negative bacterium Bordetella pertussis. It is a highly contiguous disease in the human respiratory tract. Characteristic of pertussis is a paroxysmal cough with whooping sound during gasps of breath after coughing episodes. It is potentially fatal to unvaccinated infants. The best approach to fight pertussis is to vaccinate. Vaccinations against pertussis have been available from the 1940s. Traditionally vaccines were whole-cell pertussis (wP) preparations as part of the combined diphtheria-tetanus-pertussis (DTP) vaccines. More recently acellular pertussis (aP) vaccines have replaced the wP vaccines in many countries. The aP vaccines are less reactogenic and can also be administered to school children and adults. There are several publications reporting variation in the i>B. pertussis virulence factors that are also aP vaccine antigens. This has occurred in the genes coding for pertussis toxin and pertactin about 15 to 30 years after the introduction of pertussis vaccines to immunisation programs. Resurgence of pertussis has also been reported in many countries with high vaccination coverage. In this study the evolution of B. pertussis was investigated in Finland, the United Kingdom, Poland, Serbia, China, Senegal and Kenya. These represent countries with a long history of high vaccination coverage with stable vaccines or changes in the vaccine formulation; countries which established high vaccination coverage late; and countries where vaccinations against pertussis were started late. With bacterial cytotoxicity and cytokine measurements, comparative genomic hybridisation, pulsed-field gel electrophoresis (PFGE), genotyping and serotyping it was found that changes in the vaccine composition can postpone the emergence of antigenic variants. It seems that the change in PFGE profiles and the loss of genetic material in the genome of B. pertussis are similar in most countries and the vaccine-induced immunity is selecting non-vaccine type strains. However, the differences in the formulation of the vaccines, the vaccination programs and in the coverage of pertussis vaccination have affected the speed and timing of these changes.

DPS-Like Peroxide Resistance Protein: Structural and Functional Studies on a Versatile Nanocontainer

Oxidative stress is a constant threat to almost all organisms. It damages a number of biomolecules and leads to the disruption of many crucial cellular functions. It is caused by reactive oxygen species (ROS), such as hydrogen peroxide (H2O₂), superoxide (•O₂ -), and hydroxyl radical (•OH). The most harmful of these compounds is •OH, which is only formed in cells in the presence of redox-cycling transition metals, such as iron and copper. Bacteria have developed a number of mechanisms to cope with ROS. One of the most widespread means employed by bacteria is the DNA-binding proteins from starved cells (Dps). Dps proteins protect the cells by binding and oxidizing Fe2+, thus greatly reducing the production of •OH. The oxidized iron is stored inside the protein as an iron core. In addition, Dps proteins bind directly to DNA forming a protective coating that shields DNA from harmful agents. Moreover, Dps proteins have been found to elicit other protective functions in cells and to participate in bacterial virulence. Dps proteins are of special importance to Streptococci owing to the lack of catalase in this genus of bacteria.This study was focused on structural and functional characterization of streptococcal Dpslike peroxide resistance (Dpr) proteins. Initially, crystal structures of Streptococcus pyogenes Dpr were determined. The data confirmed the presence of a di-metal ferroxidase center (FOC) in Dpr proteins and revealed the presence of a novel N-terminal helix as well as a surface metal-binding site. The crystal structures of Streptococcus suis Dpr complexed with transition metals demonstrated the metal specificity of the FOC. Solution binding studies also indicated the presence of a di-metal FOC. These results suggested a possible role for Dpr in the detoxification of various metals. Iron was found to mineralize inside the protein as ferrihydrite based on X-ray absorption spectroscopy data. The iron core was found to exhibit clear superparamagnetic behaviour using magnetic and Mössbauer measurements. The results from this study are expected to further increase our understanding on the binding, oxidation, and mineralization of iron and other metals in Dpr proteins. In particular, the structural and magnetic properties of the iron core can form a basis for potential new applications in nanotechnology. From the streptococcal viewpoint, the results would help in understanding better the complicated picture of bacterial pathogenesis. Dpr proteins may also provide a novel target for drug design due to their tight involvement in bacterial virulence.

Bag-of-Features Approach to Unsupervised Visual Object Categorisation

The large and growing number of digital images is making manual image search laborious. Only a fraction of the images contain metadata that can be used to search for a particular type of image. Thus, the main research question of this thesis is whether it is possible to learn visual object categories directly from images. Computers process images as long lists of pixels that do not have a clear connection to high-level semantics which could be used in the image search. There are various methods introduced in the literature to extract low-level image features and also approaches to connect these low-level features with high-level semantics. One of these approaches is called Bag-of-Features which is studied in the thesis. In the Bag-of-Features approach, the images are described using a visual codebook. The codebook is built from the descriptions of the image patches using clustering. The images are described by matching descriptions of image patches with the visual codebook and computing the number of matches for each code. In this thesis, unsupervised visual object categorisation using the Bag-of-Features approach is studied. The goal is to find groups of similar images, e.g., images that contain an object from the same category. The standard Bag-of-Features approach is improved by using spatial information and visual saliency. It was found that the performance of the visual object categorisation can be improved by using spatial information of local features to verify the matches. However, this process is computationally heavy, and thus, the number of images must be limited in the spatial matching, for example, by using the Bag-of-Features method as in this study. Different approaches for saliency detection are studied and a new method based on the Hessian-Affine local feature detector is proposed. The new method achieves comparable results with current state-of-the-art. The visual object categorisation performance was improved by using foreground segmentation based on saliency information, especially when the background could be considered as clutter.

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Hegemonista maskuliinisuutta etsimässä

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Kirjallisuutta

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Ahne ihminen eläimineen

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