On dome-shaped norms of reaction for size-to-age at maturity in fishes

The optimal size-to-age at maturity depends on growth and mortality rates, which vary with environment. Therefore, organisms in spatially or temporaly changing environments should develop adaptative phenotypic plasticity for this trait. Experimental work by Alm (1959) on several fish species shows a dome-shape norm of reaction for size-to-age at maturity: size at maturity is smaller in both fast-growing and slow-growing fishes, than it is in fish with a medium growth rate. Using computer simulations, we show that such a dome-shaped norm of reaction is optimal when assuming a finite life span and a negative relationship between production and survival rates. This latter assumption is supported by empirical data, as well as by physiological and emographic arguments.

Comparative genomics of ParaHox clusters of teleost fishes: gene cluster breakup and the retention of gene sets following whole genome duplications.

BACKGROUND: The evolutionary lineage leading to the teleost fish underwent a whole genome duplication termed FSGD or 3R in addition to two prior genome duplications that took place earlier during vertebrate evolution (termed 1R and 2R). Resulting from the FSGD, additional copies of genes are present in fish, compared to tetrapods whose lineage did not experience the 3R genome duplication. Interestingly, we find that ParaHox genes do not differ in number in extant teleost fishes despite their additional genome duplication from the genomic situation in mammals, but they are distributed over twice as many paralogous regions in fish genomes. RESULTS: We determined the DNA sequence of the entire ParaHox C1 paralogon in the East African cichlid fish Astatotilapia burtoni, and compared it to orthologous regions in other vertebrate genomes as well as to the paralogous vertebrate ParaHox D paralogons. Evolutionary relationships among genes from these four chromosomal regions were studied with several phylogenetic algorithms. We provide evidence that the genes of the ParaHox C paralogous cluster are duplicated in teleosts, just as it had been shown previously for the D paralogon genes. Overall, however, synteny and cluster integrity seems to be less conserved in ParaHox gene clusters than in Hox gene clusters. Comparative analyses of non-coding sequences uncovered conserved, possibly co-regulatory elements, which are likely to contain promoter motives of the genes belonging to the ParaHox paralogons. CONCLUSION: There seems to be strong stabilizing selection for gene order as well as gene orientation in the ParaHox C paralogon, since with a few exceptions, only the lengths of the introns and intergenic regions differ between the distantly related species examined. The high degree of evolutionary conservation of this gene cluster's architecture in particular - but possibly clusters of genes more generally - might be linked to the presence of promoter, enhancer or inhibitor motifs that serve to regulate more than just one gene. Therefore, deletions, inversions or relocations of individual genes could destroy the regulation of the clustered genes in this region. The existence of such a regulation network might explain the evolutionary conservation of gene order and orientation over the course of hundreds of millions of years of vertebrate evolution. Another possible explanation for the highly conserved gene order might be the existence of a regulator not located immediately next to its corresponding gene but further away since a relocation or inversion would possibly interrupt this interaction. Different ParaHox clusters were found to have experienced differential gene loss in teleosts. Yet the complete set of these homeobox genes was maintained, albeit distributed over almost twice the number of chromosomes. Selection due to dosage effects and/or stoichiometric disturbance might act more strongly to maintain a modal number of homeobox genes (and possibly transcription factors more generally) per genome, yet permit the accumulation of other (non regulatory) genes associated with these homeobox gene clusters.

Adaptive sequence evolution in a color gene involved in the formation of the characteristic egg-dummies of male haplochromine cichlid fishes.

BACKGROUND: The exceptionally diverse species flocks of cichlid fishes in East Africa are prime examples of parallel adaptive radiations. About 80% of East Africa's more than 1 800 endemic cichlid species, and all species of the flocks of Lakes Victoria and Malawi, belong to a particularly rapidly evolving lineage, the haplochromines. One characteristic feature of the haplochromines is their possession of egg-dummies on the males' anal fins. These egg-spots mimic real eggs and play an important role in the mating system of these maternal mouthbrooding fish. RESULTS: Here, we show that the egg-spots of haplochromines are made up of yellow pigment cells, xanthophores, and that a gene coding for a type III receptor tyrosine kinase, colony-stimulating factor 1 receptor a (csf1ra), is expressed in egg-spot tissue. Molecular evolutionary analyses reveal that the extracellular ligand-binding and receptor-interacting domain of csf1ra underwent adaptive sequence evolution in the ancestral lineage of the haplochromines, coinciding with the emergence of egg-dummies. We also find that csf1ra is expressed in the egg-dummies of a distantly related cichlid species, the ectodine cichlid Ophthalmotilapia ventralis, in which markings with similar functions evolved on the pelvic fin in convergence to those of the haplochromines. CONCLUSION: We conclude that modifications of existing signal transduction mechanisms might have evolved in the haplochromine lineage in association with the origination of anal fin egg-dummies. That positive selection has acted during the evolution of a color gene that seems to be involved in the morphogenesis of a sexually selected trait, the egg-dummies, highlights the importance of further investigations of the comparative genomic basis of the phenotypic diversification of cichlid fishes.

Gene loss and evolutionary rates following whole-genome duplication in teleost fishes.

Teleost fishes provide the first unambiguous support for ancient whole-genome duplication in an animal lineage. Studies in yeast or plants have shown that the effects of such duplications can be mediated by a complex pattern of gene retention and changes in evolutionary pressure. To explore such patterns in fishes, we have determined by phylogenetic analysis the evolutionary origin of 675 Tetraodon duplicated genes assigned to chromosomes, using additional data from other species of actinopterygian fishes. The subset of genes, which was retained in double after the genome duplication, is enriched in development, signaling, behavior, and regulation functional categories. The evolutionary rate of duplicate fish genes appears to be determined by 3 forces: 1) fish proteins evolve faster than mammalian orthologs; 2) the genes kept in double after genome duplication represent the subset under strongest purifying selection; and 3) following duplication, there is an asymmetric acceleration of evolutionary rate in one of the paralogs. These results show that similar mechanisms are at work in fishes as in yeast or plants and provide a framework for future investigation of the consequences of duplication in fishes and other animals.

Triassic pelagic deposits of Timor: palaeogeographic and sea-level implications

In West Timer, Triassic deposits are found in the Parautochthonous Complex, as well as in the Allochthonous series of Sonnebait. A detailed biostratigraphic investigation integrating field observations and facies analysis, allowed the reconstruction of a synthetic lithostratigraphic succession for the Upper Triassic, a stratigraphic transition from Carnian shales to Upper Norian-Rhaetian limestones is also shown by this study. The fossil content predominantly originates from an open marine environment; lithostratigraphic Units A-E are dated on the basis of radiolaria and palynomorphs, and Unit H, on ammonites and conodonts. The presence of pelagic bioclasts, together with normal grading, horizontal laminations, and current ripples, is indicative of a distal slope to basin environment. The ammonite rich condensed limestone of Unit H was deposited on a `pelagic carbonate plateau' exposed to storms and currents. The organic facies have been used as criteria for biostratigraphy, palaeoenvironmental interpretation, and sequence stratigraphy. The palaeontological analysis of the Triassic succession of West Timer is based on the investigation of radiolaria and palynomorphs, in the marls and limestones of Units A-E, and also on ammonites and conodonts in the condensed limestone of Unit H. Units A and B are Carnian (Cordevolian) in age, based on the occurrence of the palynomorph Camerosporites secatus, associated with `Lueckisporites' cf. singhii, Vallasporites ignacii, Patinosporites densus and Partitisporites novimundanus. Unit C is considered as Norian, on the basis of a relatively high percentage of Gliscopollis meyeriana and Granuloperculatipollis rudis. Unit D contains significant palynomorphs and radiolaria; the organic facies, characterized by marine elements, is dominated by the Norian dinocysts Heibergella salebrosacea and Heibergella aculeata; the radiolaria confirm the Norian age. They range from the lowermost Norian to the lower Upper Norian. Unit E also contains radiolaria, associated in the upper part with the well-known marker of the Upper Norian, Monotis salinaria. For Unit E, the radiolaria attest to a Lower to Upper Norian age based on the occurrence of Capnodoce and abundant Capnuchosphaera; the upper part is Upper Norian to Rhaetian based on the presence of Livarella valida. Finally, the blocks of condensed limestone with ammonites and conodonts of Unit H allowed the reconstruction of a synthetic stratigraphic succession of Upper Carnian to Upper Norian age. Our stratigraphic data lead to the suggestion that the Allochthonous complex, classically interpreted as a tectonic melange of the accretionary prism of the island Arc of Banda. is a tectonically dismembered part of a Triassic lithostratigraphic succession. (C) 2000 Elsevier Science B.V. All rights reserved.