A connectome-based comparison of diffusion MRI schemes.

Diffusion MRI has evolved towards an important clinical diagnostic and research tool. Though clinical routine is using mainly diffusion weighted and tensor imaging approaches, Q-ball imaging and diffusion spectrum imaging techniques have become more widely available. They are frequently used in research-oriented investigations in particular those aiming at measuring brain network connectivity. In this work, we aim at assessing the dependency of connectivity measurements on various diffusion encoding schemes in combination with appropriate data modeling. We process and compare the structural connection matrices computed from several diffusion encoding schemes, including diffusion tensor imaging, q-ball imaging and high angular resolution schemes, such as diffusion spectrum imaging with a publically available processing pipeline for data reconstruction, tracking and visualization of diffusion MR imaging. The results indicate that the high angular resolution schemes maximize the number of obtained connections when applying identical processing strategies to the different diffusion schemes. Compared to the conventional diffusion tensor imaging, the added connectivity is mainly found for pathways in the 50-100mm range, corresponding to neighboring association fibers and long-range associative, striatal and commissural fiber pathways. The analysis of the major associative fiber tracts of the brain reveals striking differences between the applied diffusion schemes. More complex data modeling techniques (beyond tensor model) are recommended 1) if the tracts of interest run through large fiber crossings such as the centrum semi-ovale, or 2) if non-dominant fiber populations, e.g. the neighboring association fibers are the subject of investigation. An important finding of the study is that since the ground truth sensitivity and specificity is not known, the comparability between results arising from different strategies in data reconstruction and/or tracking becomes implausible to understand.

3D crosshole ERT for aquifer characterization and monitoring of infiltrating river water

The hydrogeological properties and responses of a productive aquifer in northeastern Switzerland are investigated. For this purpose, 3D crosshole electrical resistivity tomography (ERT) is used to define the main lithological structures within the aquifer (through static inversion) and to monitor the water infiltration from an adjacent river. During precipitation events and subsequent river flooding, the river water resistivity increases. As a consequence, the electrical characteristics of the infiltrating water can be used as a natural tracer to delineate preferential flow paths and flow velocities. The focus is primarily on the experiment installation, data collection strategy, and the structural characterization of the site and a brief overview of the ERT monitoring results. The monitoring system comprises 18 boreholes each equipped with 10 electrodes straddling the entire thickness of the gravel aquifer. A multi-channel resistivity system programmed to cycle through various four-point electrode configurations of the 180 electrodes in a rolling sequence allows for the measurement of approximately 15,500 apparent resistivity values every 7 h on a continuous basis. The 3D static ERT inversion of data acquired under stable hydrological conditions provides a base model for future time-lapse inversion studies and the means to investigate the resolving capability of our acquisition scheme. In particular, it enables definition of the main lithological structures within the aquifer. The final ERT static model delineates a relatively high-resistivity, low-porosity, intermediate-depth layer throughout the investigated aquifer volume that is consistent with results from well logging and seismic and radar tomography models. The next step will be to define and implement an appropriate time-lapse ERT inversion scheme using the river water as a natural tracer. The main challenge will be to separate the superposed time-varying effects of water table height, temperature, and salinity variations associated with the infiltrating water.

Epidémiologie des traumatismes sportifs de l'enfant et de l'adolescent

Résumé Introduction: Les accidents sont la première cause de mortalité et de morbidité chez les enfants et les adolescents des deux sexes dès le premier mois de vie. Ils ne sont pas le fruit du hasard et ne devraient plus être considérés comme une fatalité. Leur nombre peut être réduit de façon substantielle par une bonne compréhension des processus accidentels et une information adéquate des intervenants. Cependant, les stratégies de prévention doivent se fonder sur une analyse locale de la situation. C'est pourquoi nous avons développé en 1990 un programme d'enregistrement prospectif des accidents d'enfants et d'adolescents. Le présent travail a pour but d'analyser l'épidémiologie de la traumatologie sportive de l'enfant et de l'adolescent. Matériel et méthode: Nous disposons d'un programme d'enregistrement prospectif des accidents d'enfants et d'adolescents de 0 à 16 ans survenus dans le canton de Vaud, Suisse. De 1990 à 2000, nous avons enregistré 24'900 traumatismes aux urgences du Service de chirurgie pédiatrique du CHUV de Lausanne, dont 6'890 (28%) étaient des traumatismes sportifs. Les informations collectées dans cette étude concernent la date de l'accident, l'âge du patient, le sport pratiqué, le type de lésion(s) et le type de suivi (traitement ambulatoire, hospitalisation, etc) et permettent une analyse de l'épidémiologie de la traumatologie sportive de l'enfant sur 11 ans. Résultats: Nette prédominance masculine (1.6 :1). Plus de 50% des enfants ont entre 12 et 15 ans. Vélo, gymnastique et football dominent, représentant à eux seuls 45% des cas. La fréquence des accidents obéit, selon le sport concerné, à un rythme saisonnier et dépendant des vacances. Certaines activités comme la trottinette ou le snowboard apparaissent soudain à la faveur d'une mode. Le ski occasionne 48% de lésions des membres inférieurs, le roller 56% de lésions des membres supérieurs, le basket-ball 57% de lésions de la main, la natation et le plongeon 53% de lésions de la tête ou de la colonne cervicale. Les contusions représentent 27% des consultations. La fracture la plus courante est celle de l'avant-bras, représentant 34% des fractures de membres. Les fractures de la main représentent 69% des fractures de membres au basket-ball, contre 3% dans l'équitation où les fractures de l'humérus prédominent (42%). 10% des patients sont hospitalisés, et 55% seront revus ambulatoirement. Discussion: Chaque sport occasionne des lésions dont le type et la localisation lui sont propres et qui permettent dans la plupart des cas de reconnaître le mécanisme lésionnel et de déterminer des stéréotypes. Conclusion: Une meilleure connaissance des lésions occasionnées par chaque sport devrait permettre le développement de programmes de prévention mieux adaptés. Ils doivent associer le plus grand nombre de partenaires possibles, issus de tous les milieux et passant par une information de ceux-ci.

Spleen Volume Variation in Patients with Locally Advanced Non-Small Cell Lung Cancer Receiving Platinum-Based Chemo-Radiotherapy.

There is renewed interest in the immune regulatory role of the spleen in oncology. To date, very few studies have examined macroscopic variations of splenic volume in the setting of cancer, prior to or during therapy, especially in humans. Changes in splenic volume may be associated with changes in splenic function. The purpose of this study was to investigate variations in spleen volume in NSCLC patients during chemo-radiotherapy. Sixty patients with stage I-IIIB NSCLC underwent radiotherapy (60Gy/30 fractions) for six weeks with concomitant carboplatin/paclitaxel (Ca/P; n = 32) or cisplatin/etoposide (Ci/E; n = 28). A baseline PET/CT scan was performed within 2 weeks prior to treatment and during Weeks 2 and 4 of chemo-radiotherapy. Spleen volume was measured by contouring all CT slices. Significant macroscopic changes in splenic volume occurred early after the commencement of treatment. A significant decrease in spleen volume was observed for 66% of Ca/P and 79% of Ci/E patients between baseline and Week 2. Spleen volume was decreased by 14.2% for Ca/P (p<0.001) and 19.3% for Ci/E (p<0.001) patients. By Week 4, spleen volume was still significantly decreased for Ca/P patients compared to baseline, while for Ci/E patients, spleen volume returned to above baseline levels. This is the first report demonstrating macroscopic changes in the spleen in NSCLC patients undergoing radical chemo-radiotherapy that can be visualized by non-invasive imaging.

Blurred pictures from the crime scene: the growing case for a function of Chlamydiales in plastid endosymbiosis.

A number of recent papers have brought suggestive evidence for an active role of Chlamydiales in the establishment of the plastid. Chlamydiales define a very ancient group of obligate intracellular bacterial pathogens that multiply in vesicles within eukaryotic phagotrophic host cells such as animals, amoebae or other protists, possibly including the hypothetical phagotroph that internalized the cyanobacterial ancestor of the plastid over a billion years ago. We briefly survey the case for an active role of these ancient pathogens in plastid endosymbiosis. We argue that a good understanding of the Chlamydiales infection cycle and diversity may help to shed light on the process of metabolic integration of the evolving plastid.

Extracellular Subunit Interactions Control Transitions between Functional States of Acid-sensing Ion Channel 1a.

Acid-sensing ion channels (ASICs) are neuronal, voltage-independent Na(+) channels that are transiently activated by extracellular acidification. They are involved in pain sensation, the expression of fear, and in neurodegeneration after ischemic stroke. Our study investigates the role of extracellular subunit interactions in ASIC1a function. We identified two regions involved in critical intersubunit interactions. First, formation of an engineered disulfide bond between the palm and thumb domains leads to partial channel closure. Second, linking Glu-235 of a finger loop to either one of two different residues of the knuckle of a neighboring subunit opens the channel at physiological pH or disrupts its activity. This suggests that one finger-knuckle disulfide bond (E235C/K393C) sets the channel in an open state, whereas the other (E235C/Y389C) switches the channel to a non-conducting state. Voltage-clamp fluorometry experiments indicate that both the finger loop and the knuckle move away from the β-ball residue Trp-233 during acidification and subsequent desensitization. Together, these observations reveal that ASIC1a opening is accompanied by a distance increase between adjacent thumb and palm domains as well as a movement of Glu-235 relative to the knuckle helix. Our study identifies subunit interactions in the extracellular loop and shows that dynamic changes of these interactions are critical for normal ASIC function.