Los buscavidas: nómadas del capitalismo

Esta investigación se propone describir los rasgos esenciales de un tipo de personajes que hemos denominado, a efectos de generalización teórica, como “buscavidas”, peregrinos antihéroes del sistema laboral contemporáneo, deficientemente integrados a los valores del capitalismo e irreductibles a sus principios disciplinarios, que podemos hallar en la novelística del s. XX. He escogido a título de ejemplo cuatro novelas emblemáticas: Viaje al fin de la noche (1932), de Louis-Ferdinand Celine (1894-1961); La Conjura de los Necios (1980), de John Kennedy Toole (1937-1969); Factotum (1975), de Charles Bukowski (1920-1994) y Los Hermanos Tanner (1907), de Robert Walser (1878-1956). Asimismo, en el tercer capítulo de esta investigación, tendremos en cuenta la novela El Desaparecido (1927), de Franz Kafka (1883-1924), como un contrapunto iluminador que contribuye a analizar el tejido problemático de las dinámicas laborales en el pasado siglo. Karl Rossman, “el desaparecido”, no pertenece a la categoría de los buscavidas, porque a diferencia de estos, aspira a progresar en su carrera, pero sufre los golpes bajos de un sistema que tiene reservado a su condición de emigrante la misma suerte ingrata.

Improving gene annotation using peptide mass spectrometry

Annotation of protein-coding genes is a key goal of genome sequencing projects. In spite of tremendous recent advances in computational gene finding, comprehensive annotation remains a challenge. Peptide mass spectrometry is a powerful tool for researching the dynamic proteome and suggests an attractive approach to discover and validate protein-coding genes. We present algorithms to construct and efficiently search spectra against a genomic database, with no prior knowledge of encoded proteins. By searching a corpus of 18.5 million tandem mass spectra (MS/MS) from human proteomic samples, we validate 39,000 exons and 11,000 introns at the level of translation. We present translation-level evidence for novel or extended exons in 16 genes, confirm translation of 224 hypothetical proteins, and discover or confirm over 40 alternative splicing events. Polymorphisms are efficiently encoded in our database, allowing us to observe variant alleles for 308 coding SNPs. Finally, we demonstrate the use of mass spectrometry to improve automated gene prediction, adding 800 correct exons to our predictions using a simple rescoring strategy. Our results demonstrate that proteomic profiling should play a role in any genome sequencing project.

Generalized low-density codes with BCH constituents for full-diversity near-outage performance

A new graph-based construction of generalized low density codes (GLD-Tanner) with binary BCH constituents is described. The proposed family of GLD codes is optimal on block erasure channels and quasi-optimal on block fading channels. Optimality is considered in the outage probability sense. Aclassical GLD code for ergodic channels (e.g., the AWGN channel,the i.i.d. Rayleigh fading channel, and the i.i.d. binary erasure channel) is built by connecting bitnodes and subcode nodes via a unique random edge permutation. In the proposed construction of full-diversity GLD codes (referred to as root GLD), bitnodes are divided into 4 classes, subcodes are divided into 2 classes, and finally both sides of the Tanner graph are linked via 4 random edge permutations. The study focuses on non-ergodic channels with two states and can be easily extended to channels with 3 states or more.