Hydrologic modeling and uncertainty analysis of an ungauged watershed using mapwindow-swat

Dissertation submitted in partial fulfillment of the requirements for the Degree of Master of Science in Geospatial Technologies

Nova abordagem no diagnóstico de infecções invasivas por fungos do género Aspergillus

Nas últimas duas décadas tem-se verificado um aumento da incidência de aspergilose pulmonar invasiva, que se reflecte em taxas de mortalidade e morbilidade extremamente elevadas. Esta realidade resulta da elevada utilização de quimioterapia e de agentes imunossupressores, usados sobretudo em doentes imunocomprometidos, principalmente, em doentes hemato-oncológicos e receptores de transplante de medula óssea. Estas infecções fúngicas são provocadas por algumas espécies do género Aspergillus em que Aspergillus fumigatus é a espécie mais frequentemente isolada a partir de infecções humanas. Contudo, outras espécies como A. flavus, A. niger, A. glaucus, A. nidulans, A. terreus ou A. versicolor também podem ser responsáveis por infecções fúngicas no Homem. Um factor determinante para o aumento da incidência de aspergilose invasiva consiste na incapacidade de se estabelecer um diagnóstico precoce definitivo para que, em tempo útil, possa ser instituída terapêutica antifúngica que vá seguramente melhorar o prognóstico desses doentes. Actualmente, as técnicas convencionais (microbiológicas e histológicas) têm servido como linhas de orientação para o diagnóstico definitivo de micoses. No entanto, como se tratam técnicas morosas, o diagnóstico imunológico e molecular tem todas as potencialidades para oferecer uma abordagem promissora no diagnóstico de infecções fúngicas. Neste trabalho foram estudadas 37 amostras clínicas, das quais 45,9% pertenciam a indivíduos do sexo feminino, 54,1% do sexo masculino, maioritariamente com o diagnóstico clínico de leucemia mielóide aguda (75,7%). O principal objectivo deste trabalho consistiu na comparação dos resultados obtidos por uma técnica imunológica utilizada no diagnóstico de aspergilose pulmonar invasiva (pesquisa do antigénio GM) com uma nova técnica molecular de diagnóstico (nested-PCR), com o intuito de avaliar a sensibilidade e especificidade dos resultados obtidos. Dos 37 doentes do estudo, 35,1% revelaram presença do antigénio galactomanano e em 32,4% das amostras foi possível detectar DNA fúngico utilizando primers específicos numa reacção de nested-PCR. No final deste trabalho pode-se constatar que, em virtude do método molecular utilizando uma reacção de nested-PCR não se ter revelado mais sensível que a pesquisa do antigénio galactomanano, julgamos ser no entanto muito promissor no diagnóstico da aspergilose pulmonar invasiva, bastando apenas aperfeiçoar a sua optimização.

Argamassas de reboco com cal aérea, terra e fibras naturais: avaliação preliminar da suscetibilidade à contaminação biológica

Argamassas 2014 - I Simpósio de Argamassas e Soluções Térmicas de Revestimento, 5-6 Junho, ITeCons, Universidade de Coimbra

Design and characterization of Chitin- Glucan polymeric structures for wound dressing materials

The main objective of this work was the development of polymeric structures, gel and films, generated from the dissolution of the Chitin-Glucan Complex (CGC) in biocompatible ionic liquids for biomedical applications. Similar as chitin, CGC is only soluble in some special solvents which are toxic and corrosive. Due to this fact and the urgent development of biomedical applications, the need to use biocompatible ionic liquids to dissolve the CGC is indispensable. For the dissolution of CGC, the biocompatible ionic liquid used was Choline acetate. Two different CGC’s, KiOnutrime from KitoZyme and biologically produced CGC from Faculdade de Ciencias e Tecnologia (FCT) - Universidade Nova de Lisboa, were characterized in order to develop biocompatible wound dressing materials. The similar result is shown in term of the ratio of chitin:glucan, which is 1:1.72 for CGC-FCT and 1:1.69 for CGC-Commercial. For the analysis of metal element content, water and inorganic salts content and protein content, both polymers showed some discrepancies, where the content in CGC-FCT is always higher compared to the commercial one. The different characterization results between CGC-FCT and CGC-Commercial could be addressed to differences in the purification method, and the difference of its original strain yeast, whereas CGC-FCT is derived from P.pastoris and the commercial CGC is from A.niger. This work also investigated the effect of biopolymers, temperature dissolution, non-solvent composition on the characteristics of generated polymeric structure with biocompatible ionic liquid. The films were prepared by casting a polymer mixture, immersion in a non-solvent, followed by drying at ambient temperature. Three different non-solvents were tested in phase inversion method, i.e. water, methanol, and glycerol. The results indicate that the composition of non-solvent in the coagulation bath has great influence in generated polymeric structure. Water was found to be the best coagulant for producing a CGC polymeric film structure. The characterizations that have been done include the analysis of viscosity and viscoelasticity measurement, as well as sugar composition in the membrane and total sugar that was released during the phase inversion method. The rheology test showed that both polymer mixtures exhibit a non- Newtonian shear thinning behaviour. Where the viscosity and viscoelasticity test reveal that CGCFCT mixture has a typical behaviour of a viscous solution with entangled polymer chains and CGCCommercial mixture has true gel behaviour. The experimental results show us that the generated CGC solution from choline acetate could be used to develop both polymeric film structure and gel. The generated structures are thermally stable at 100° C, and are hydrophilic. The produced films have dense structure and mechanical stabilities against puncture up to 60 kPa.

Production and characterization of Chitin-Glucan Complex by Komagataella pastoris

This thesis was focused on the production, extraction and characterization of chitin:β-glucan complex (CGC). In this process, glycerol byproduct from the biodiesel industry was used as carbon source. The selected CGC producing yeast was Komagataella pastoris (formerly known as Pichia pastoris), due the fact that to achieved high cell densities using as carbon source glycerol from the biodiesel industry. Firstly, a screening of K. pastoris strains was performed in shake flask assays, in order to select the strain of K. pastoris with better performance, in terms of growth, using glycerol as a carbon source. K. pastoris strain DSM 70877 achieved higher final cell densities (92-97 g/l), using pure glycerol (99%, w/v) and in glycerol from the biodiesel industry (86%, w/v), respectively, compared to DSM 70382 strain (74-82 g/l). Based on these shake flask assays results, the wild type DSM 70877 strain was selected to proceed for cultivation in a 2 l bioreactor, using glycerol byproduct (40 g/l), as sole carbon source. Biomass production by K. pastoris was performed under controlled temperature and pH (30.0 ºC and 5.0, respectively). More than 100 g/l biomass was obtained in less than 48 h. The yield of biomass on a glycerol basis was 0.55 g/g during the batch phase and 0.63 g/g during the fed-batch phase. In order to optimize the downstream process, by increasing extraction and purification efficiency of CGC from K. pastoris biomass, several assays were performed. It was found that extraction with 5 M NaOH at 65 ºC, during 2 hours, associated to neutralization with HCl, followed by successive washing steps with deionised water until conductivity of ≤20μS/cm, increased CGC purity. The obtained copolymer, CGCpure, had a chitin:glucan molar ratio of 25:75 mol% close to commercial CGC samples extracted from A. niger mycelium, kiOsmetine from Kitozyme (30:70 mol%). CGCpure was characterized by solid-state Nuclear Magnetic Resonance (NMR) spectroscopy and Differential Scanning Calorimetry (DCS), revealing a CGC with higher purity than a CGC commercial (kiOsmetine). In order to optimize CGC production, a set of batch cultivation experiments was performed to evaluate the effect of pH (3.5–6.5) and temperature (20–40 ºC) on the specific cell growth rate, CGC production and polymer composition. Statistical tools (response surface methodology and central composite design) were used. The CGC content in the biomass and the volumetric productivity (rp) were not significantly affected within the tested pH and temperature ranges. In contrast, the effect of pH and temperature on the CGC molar ratio was more pronounced. The highest chitin: β-glucan molar ratio (> 14:86) was obtained for the mid-range pH (4.5-5.8) and temperatures (26–33 ºC). The ability of K. pastoris to synthesize CGC with different molar ratios as a function of pH and temperature is a feature that can be exploited to obtain tailored polymer compositions.(...)