Design of bio-inspired ionic liquids for protein stabilisation

Ionic Liquids (ILs) consist in organic salts that are liquid at/or near room temperature. Since ILs are entirely composed of ions, the formation of ion pairs is expected to be one essential feature for describing solvation in ILs. In recent years, protein - ionic liquid (P-IL) interactions have been the subject of intensive studies mainly because of their capability to promote folding/unfolding of proteins. However, the ion pairs and their lifetimes in ILs in P-IL thematic is dismissed, since the action of ILs is therefore the result of a subtle equilibrium between anion-cation interaction, ion-solvent and ion-protein interaction. The work developed in this thesis innovates in this thematic, once the design of ILs for protein stabilisation was bio-inspired in the high concentration of organic charged metabolites found in cell milieu. Although this perception is overlooked, those combined concentrations have been estimated to be ~300 mM among the macromolecules at concentrations exceeding 300 g/L (macromolecular crowding) and transient ion-pair can naturally occur with a potential specific biological role. Hence the main objective of this work is to develop new bio-ILs with a detectable ion-pair and understand its effects on protein structure and stability, under crowding environment, using advanced NMR techniques and calorimetric techniques. The choline-glutamate ([Ch][Glu]) IL was synthesized and characterized. The ion-pair was detected in water solutions using mainly the selective NOE NMR technique. Through the same technique, it was possible to detect a similar ion-pair promotion under synthetic and natural crowding environments. Using NMR spectroscopy (protein diffusion, HSQC experiments, and hydrogen-deuterium exchange) and differential scanning calorimetry (DSC), the model protein GB1 (production and purification in isotopic enrichment media) it was studied in the presence of [Ch][Glu] under macromolecular crowding conditions (PEG, BSA, lysozyme). Under dilute condition, it is possible to assert that the [Ch][Glu] induces a preferential hydration by weak and non-specific interactions, which leads to a significant stabilisation. On the other hand, under crowding environment, the [Ch][Glu] ion pair is promoted, destabilising the protein by favourable weak hydrophobic interactions , which disrupt the hydration layer of the protein. However, this capability can mitigates the effect of protein crowders. Overall, this work explored the ion-pair existence and its consequences on proteins in conditions similar to cell milieu. In this way, the charged metabolites found in cell can be understood as key for protein stabilisation.

Evolution of genotypes of Group A streptococci from colonization and infection

Dissertação para obtenção do Grau de Doutor em Biologia

An RBC model with a rich fiscal sector

A Work Project, presented as part of the requirements for the Award of a Masters Degree in Economics from the NOVA – School of Business and Economics

Old cellulose for new multifunctional networks

Dissertação para obtenção do Grau de Doutor em Ciência e Engenharia de Materiais

Human ceruloplasmin and neurotransmitters: complex stabilization and crystallization

Dissertation to obtain a Master Degree in Molecular Genetics and Biomedicine at Faculty of Sciences and Technology,Universidade Nova de Lisboa

Assessment of Notch1 ligands production - key protein targets in breast cancer

Cell-to-cell communication is required for many biological processes in development and adult life. One of the most common systems utilized by a wide range of eukaryotes is the Notch signalling pathway. Four Notch receptors and five ligands have been identified in mammals that interact via their extracellular domains leading to transcription activation. Studies have shown that the Notch ligands expression is undetectable in normal breast tissues, but moderate to high expression has been detected in breast cancer. Thus, any of the Notch1 ligands can be studied as possible therapeutic targets for breast cancer. To study Notch pathway proteins there is the need to obtain stable protein solutions. E. coli is the host of excellence for recombinant proteins for the ease of use, fast growth and high cell densities. However, the expression of mammalian proteins in such systems may overwhelm the bacterial cellular machinery, which does not possess the ability for post-translational modifications, or dedicated compartments for protein synthesis. Mammalian cells are therefore preferred, despite their technical and financial increased demands. We aim to determine the best expression and purification conditions for the different ligand protein constructs, to develop specific function-blocking antibodies using the Phage Display technology. Moreover, we propose to crystallize the Notch1 ligands alone and in complex with the phage display selected antibodies, unveiling molecular details. hJag2DE3 and hDll1DE6 proteins were purified from refolded inclusion bodies or mammalian cell culture supernatants, respectively, and purity was confirmed by SDS-PAGE (>95%). Protein produced in mammalian cells showed to be more stable, apparently with the physiological disulfide pattern, contrary to what was observed in the refolded protein. Several nano-scale crystallization experiments were set up in 96-well plates, but no positive result was obtained. We will continue to pursue for the best expression for the Notch ligand constructs in both expression systems.

Basel III new capital requirements, impacts and bank behavior

For some years, researchers could not find a clear effect of capital adequacy on the risk profile of banks, as shareholders could increase the riskiness of the assets (qualitative effect), crowding-out the effect of reduced leverage (volume effect). Some shareholders might have the will to increase the riskiness of the assets, but they may lack the power to do so. Considering only ”powerful” shareholders, definitive conclusions were drawn but with constant ownership profile. In this paper I investigate whether there is a significant change in the type of shareholders in response to regulatory capital shocks and, if so, will the banking system be in the hands of more “desired” shareholders. I find that ownership profile responds to a regulatory shock, changing the risk appetite of the ruling power at the bank. I find more banks and the government in the ownership of undercapitalised banks and much less institutional shareholders and free float. I claim that these new shareholders may not the desired ones, given the objective of the regulatory change, as they are associated with a preference for more leverage. One possible explanation for this crowding-out effect is that regulators are trying to contain idiosyncratic risk (more linked to the riskiness of the assets) with a rule that contains systematic risk (capital adequacy). This has a distorting effect on ownership. Another insight can be drawn from the tests: supervisors should be aware of significant ownership movements that cause the crowding-out.

Prevalência de obesidade em adolescentes do distrito de Viseu

RESUMO - Introdução: A prevalência de obesidade apresenta valores preocupantes em todas as idades e é reconhecida pela Organização Mundial da Saúde como um importante problema de saúde pública. Diversos estudos mostram que a sua prevalência tem aumentado significativamente nas últimas décadas, particularmente nos países industrializados. O objectivo da presente investigação foi calcular a prevalência de excesso de peso e de obesidade em adolescentes do distrito de Viseu. Métodos: Realizámos um estudo transversal onde avaliámos os alunos de vinte e seis das quarenta e oito escolas públicas do terceiro ciclo e secundário do distrito de Viseu, frequentadas por um total de 23 895 alunos, do 7.o ao 12.o ano. A recolha dos dados foi efectuada através de um questionário auto-aplicado e respondido pelos alunos em sala de aula. Dos 8768 questionários distribuídos recolhemos 7644 (87,2%). Foram excluídos da análise os questionários sem informação para o sexo e para a idade. Ficámos com uma amostra global de 7563 adolescentes, sendo 4117 (54,4%) do sexo feminino. O excesso de peso e a obesidade foram avaliados utilizando o índice de massa corporal (IMC) calculado pela razão entre o peso auto declarado em quilogramas e o quadrado da altura, em metros, também auto declarada (kg/m2). Definimos excesso de peso para valores compreendidos entre o percentil 85 e 95, obesidade para um percentil superior ou igual a 95, e excesso de peso e obesidade para um percentil superior ou igual a 85. Resultados: No total da amostra, a prevalência de excesso de peso é de 13,7%, superior no sexo masculino (16,0% vs. 11,6%). A prevalência de obesidade é de 3,4%, superior no sexo masculino (4,2% vs. 2,8%). A prevalência de excesso de peso e obesidade é de 17,1%, superior no sexo masculino (20,2% vs. 14,4%). Os concelhos situados a norte do distrito de Viseu apresentam prevalências superiores, de excesso de peso (15,9% vs. 13,0%, OR = 1,3; IC95% 1,1-1,5), de obesidade (4,5% vs. 3,6%, OR = 1,3; IC95% 1,0-1,7) e de excesso de peso e obesidade (19,1% vs. 15,7%, OR = 1,3; IC95% 1,1-1,4). A prevalência de excesso de peso e obesidade é superior entre os adolescentes com o índice de aglomeração superior a um. Conclusões: Regista-se uma elevada prevalência de excesso de peso e de obesidade, superior no sexo masculino, com diferenças geográficas significativas.