The role of the efflux mechanisms in multidrug resistance in Mycobacterium tuberculosis

Abstract The emergence of multi and extensively drug resistant tuberculosis (MDRTB and XDRTB) has increased the concern of public health authorities around the world. The World Health Organization has defined MDRTB as tuberculosis (TB) caused by organisms resistant to at least isoniazid and rifampicin, the main first-line drugs used in TB therapy, whereas XDRTB refers to TB resistant not only to isoniazid and rifampicin, but also to a fluoroquinolone and to at least one of the three injectable second-line drugs, kanamycin, amikacin and capreomycin. Resistance in Mycobacterium tuberculosis is mainly due to the occurrence of spontaneous mutations and followed by selection of mutants by subsequent treatment. However, some resistant clinical isolates do not present mutations in any genes associated with resistance to a given antibiotic, which suggests that other mechanism(s) are involved in the development of drug resistance, namely the presence of efflux pump systems that extrude the drug to the exterior of the cell, preventing access to its target. Increased efflux activity can occur in response to prolonged exposure to subinhibitory concentrations of anti-TB drugs, a situation that may result from inadequate TB therapy. The inhibition of efflux activity with a non-antibiotic inhibitor may restore activity of an antibiotic subject to efflux and thus provide a way to enhance the activity of current anti-TB drugs. The work described in this thesis foccus on the study of efflux mechanisms in the development of multidrug resistance in M. tuberculosis and how phenotypic resistance, mediated by efflux pumps, correlates with genetic resistance. In order to accomplish this goal, several experimental protocols were developed using biological models such as Escherichia coli, the fast growing mycobacteria Mycobacterium smegmatis, and Mycobacterium avium, before their application to M. tuberculosis. This approach allowed the study of the mechanisms that result in the physiological adaptation of E. coli to subinhibitory concentrations of tetracycline (Chapter II), the development of a fluorometric method that allows the detection and quantification of efflux of ethidium bromide (Chapter III), the characterization of the ethidium bromide transport in M. smegmatis (Chapter IV) and the contribution of efflux activity to macrolide resistance in Mycobacterium avium complex (Chapter V). Finally, the methods developed allowed the study of the role of efflux pumps in M. tuberculosis strains induced to isoniazid resistance (Chapter VI). By this manner, in Chapter II it was possible to observe that the physiological adaptation of E. coli to tetracycline results from an interplay between events at the genetic level and protein folding that decrease permeability of the cell envelope and increase efflux pump activity. Furthermore, Chapter III describes the development of a semi-automated fluorometric method that allowed the correlation of this efflux activity with the transport kinetics of ethidium bromide (a known efflux pump substrate) in E. coli and the identification of efflux inhibitors. Concerning M. smegmatis, we have compared the wild-type M. smegmatis mc2155 with knockout mutants for LfrA and MspA for their ability to transport ethidium bromide. The results presented in Chapter IV showed that MspA, the major porin in M. smegmatis, plays an important role in the entrance of ethidium bromide and antibiotics into the cell and that efflux via the LfrA pump is involved in low-level resistance to these compounds in M. smegmatis. Chapter V describes the study of the contribution of efflux pumps to macrolide resistance in clinical M. avium complex isolates. It was demonstrated that resistance to clarithromycin was significantly reduced in the presence of efflux inhibitors such as thioridazine, chlorpromazine and verapamil. These same inhibitors decreased efflux of ethidium bromide and increased the retention of [14C]-erythromycin in these isolates. Finaly, the methods developed with the experimental models mentioned above allowed the study of the role of efflux pumps on M. tuberculosis strains induced to isoniazid resistance. This is described in Chapter VI of this Thesis, where it is demonstrated that induced resistance to isoniazid does not involve mutations in any of the genes known to be associated with isoniazid resistance, but an efflux system that is sensitive to efflux inhibitors. These inhibitors decreased the efflux of ethidium bromide and also reduced the minimum inhibitory concentration of isoniazid in these strains. Moreover, expression analysis showed overexpression of genes that code for efflux pumps in the induced strains relatively to the non-induced parental strains. In conclusion, the work described in this thesis demonstrates that efflux pumps play an important role in the development of drug resistance, namely in mycobacteria. A strategy to overcome efflux-mediated resistance may consist on the use of compounds that inhibit efflux activity, restoring the activity of antimicrobials that are efflux pump substrates, a useful approach particularly in TB where the most effective treatment regimens are becoming uneffective due to the increase of MDRTB/XDRTB.

The globalisation in the clothing sector and its implications for work organisation: a view from the Portuguese case

The clothing sector in Portugal is still seen, in many aspects as a traditional sector with some average characteristics, such as: low level of qualifications, less flexible labour legislation and stronger unionisation, very low salaries and low capability of investment in innovation and new technology. Is, nevertheless, a very important sector in terms of labour market, with increased weight in the exporting structure. Globalisation and delocalisation are having a strong impact in the organisation of work and in occupational careers in the sector. With the pressure of global competitiveness in what concerns time and prices, very few companies are able to keep a position in the market without changes in organisation of work and workers. And those that can perform good responses to such challenges are achieving a better economical stability. The companies have found different ways to face this reality according to size, capital and position. We could find two main paths: one where companies outsource a part or the entire production to another territory (for example, several manufacturing tasks), close and/or dismissal the workers. Other path, where companies up skilled their capacities investing, for example, in design, workers training, conception and introduction of new or original products. This paper will present some results from the European project WORKS – Work organisation and restructuring in the knowledge society (6th Framework Programme), focusing the Portuguese case studies in several clothing companies in what concern implications of global context for the companies in general and for the workers in particular, in a comparative analysis with some other European countries.

Including context in a routing algorithm for the internet of things

Dissertação apresentada na Faculdade de Ciências e Tecnologia da Universidade Nova de Lisboa para obtenção do grau de Mestre em Engenharia Informática

Static detection of anomalies in transactional memory programs

Dissertação apresentada na Faculdade de Ciências e Tecnologia da Universidade Nova de Lisboa para a obtenção do Grau de Mestre em Engenharia Informática

Evolution of genotypes of Group A streptococci from colonization and infection

Dissertação para obtenção do Grau de Doutor em Biologia

Parallel run-time for CO-OPN

Dissertação para obtenção do Grau de Mestre em Engenharia Informática

Algorithmic skeleton framework for the orchestration of GPU computations

Dissertação para obtenção do Grau de Mestre em Engenharia Informática

A modular distributed transactional memory framework

Dissertação para obtenção do Grau de Mestre em Engenharia Informática

Caracterização da actividade física nos idosos e a sua relação com a capacidade física, em pessoas com mais de 75 anos

RESUMO: Objectivo: O presente estudo tem como objectivo caracterizar os níveis de actividade física das pessoas com mais de 75 anos e analisar a sua relação com as diferentes componentes da aptidão física. Enquadramento: A actividade física é indispensável para todos mas, os idosos é quem mais beneficia (Fischer, 2005). Actua na prevenção e na reabilitação, fortalecendo a aptidão física, e a autonomia do idoso, permitindo manter, por mais tempo, a capacidade de execução das actividades de vida diárias (Shephard, 2003). A prática de actividade física contribui por exemplo, para a prevenção de quedas, reforçando a aptidão física e o equilíbrio postural. Por outro lado, o baixo nível de aptidão física repercute-se no aumento da actividade sedentária. Os homens têm uma adesão à actividade física de 45% e as mulheres de 28% (Melo et. al., 2007). Métodos: Este é um estudo observacional, correlacional e transversal. Foram avaliados 66 participantes (média de idade de 80,11 ± 3,83 anos), não institucionalizados. O processo de amostragem foi não probabilístico acidental por conveniência. Todos os idosos deram o seu consentimento informado. A actividade física foi avaliada através do questionário do Yale Physical Activity Survey, e foi desenvolvido um diário, para uma semana-tipo, para averiguar os hábitos de actividades diárias, nas últimas quatro semanas. A aptidão física foi avaliada pela bateria de testes de Rikli e Jones (1999),nomeadamente a força, a flexibilidade, a resistência aeróbia e a agilidade e equilíbrio. Os dados foram analisados através da estatística descritiva e para averiguar as possíveis associações entre a actividade física e a aptidão física, recorreu-se á estatística inferencial. Não tendo sido verificada a normalidade da amostra com o teste kolmogorov-smirnov, foram utilizados testes não paramétricos, nomeadamente o teste U Mann – Whitney e o coeficiente de correlação de Spearman (p≤0,05). Resultados: Constatou-se que os idosos em média praticavam 480, 23 minutos por semana de actividade moderada, cerca 11,04% do seu tempo, superior ao recomendado pela literatura (>150 minutos por semana). A actividade física moderada apresentou relações positivas com a aptidão física, na força dos membros inferiores, na resistência aeróbia e na agilidade e equilíbrio. Os homens têm maior agilidade e equilíbrio (p=0,002) e força dos membros inferiores (p=0,025) que as mulheres. Os homens passam mais tempo em actividade moderada do que as mulheres. Ainda superam no gasto energético em cada actividade que praticam durante a semana. As mulheres passam mais tempo em actividade sedentária e actividade ligeira. Conclusão: Quanto mais tempo de prática de actividade física moderada melhor a força dos membros inferiores, a resistência aeróbia, a agilidade e o equilíbrio dinâmico. Recomenda-se uma reflexão sobre a possível intervenção na estruturação das actividades diárias do idoso e uma intervenção mais direccionada às idosas, na força do membro inferior, na agilidade e na resistência aeróbia.----------------------- ABSTRACT:Purpose: The present study aims to characterize the physical activity levels of people over 75 years and analyze their relationship with the different components of physical fitness. Background: Physical activity is essential for all but the elderly who are more benefit (Fischer, 2005). It works on prevention and rehabilitation, strengthening physical fitness,and independence of older people, maintaining, for longer, the ability to implement the activities of daily living (Shephard, 2003). The physical activity contributes for example, for the prevention of falls by strengthening physical fitness and postural balance. Moreover, the low level of physical fitness level is reflected in the increase of sedentary activity. Men have an adherence to physical activity of 45% and women 28% (Melo et. al, 2007) Methods: This was an observational, cross-sectional and correlational. We evaluated 66 participants (mean age 80.11 ± 3.83 years), not institutionalized. The sampling procedure was non accidental probabilistic convenience. All seniors gave their informed consent. Physical activity was assessed by questionnaire at the Yale Physical Activity Survey was developed and a diary-type for a week, to ascertain the habits of daily activities in the last four weeks. Physical fitness was assessed by the battery of tests Rikli and Jones (1999), including strength, flexibility, endurance and agility and balance. Data were analyzed using descriptive statistics and to investigate possible associations between physical activity and physical fitness, we used will inferential statistics. Not having been verified the sample normality with Kolmogorov-Smirnov test, we used non-parametric tests, including the test U Mann - Whitney and Spearman correlation coefficient (p ≤ 0.05). Results: It was found that older people on average practiced 480, 23 minutes per week of moderate activity, about 11,04% of the time, higher than recommended in the literature (> 150 minutes per week). A moderate physical activity had positive correlations with physical fitness, lower limb strength, endurance and aerobic agility and balance. Men have greater agility and balance (p = 0.002) and lower-limb strength (p = 0.025) than women. Men spend more time in moderate activity than women. Still outweigh the energy expenditure for each activity they practice during the week. Women spend more time in sedentary activity and light activity. Conclusion: The more practice time in moderate physical activity best lower-limb strength,aerobic resistance, agility and dynamic balance. It is recommended that a reflection on the possible intervention in structuring the daily activities of the elderly and a more targeted to the woman elderly, especially lower limb strength, agility and endurance.

Extracting temporal and spatial distributions information about marine mucilage phenomenon based on Modis satellite images; a case study of the Tyrrhenian and the Adriatic Sea, 2010-2012

Dissertation submitted in partial fulfillment of the requirements for the Degree of Master of Science in Geospatial Technologies.

A reabilitação respiratória para doentes com doença pulmonar obstrutiva crónica

RESUMO - CONTEXTO: A doença pulmonar obstrutiva crónica (DPOC) é uma doença de elevada prevalência a nível nacional e internacional, mas encontra-se presentemente subdiagnosticada e inadequadamente tratada. A reabilitação respiratória (RR), embora seja uma intervenção-padrão no tratamento da DPOC, é ainda pouco conhecida pelos profissionais e pelos doentes. Em Portugal existem doze instituições com programas de RR, mas terão os médicos de família conhecimento dos mesmos e do tratamento definido pelas guidelines para o doente com DPOC? Terão estes programas capacidade para dar resposta a todos os doentes que beneficiariam de RR? OBJECTIVOS: perceber como participam os doentes com DPOC em RR actualmente em Portugal; conhecer as percepções dos profissionais de saúde acerca da intervenção; identificar os factores que condicionam a acessibilidade do doente com DPOC a RR. MÉTODOS: desenvolvimento e aplicação de dois questionários: a coordenadores de USF – no sentido de avaliar o conhecimento, comportamentos e percepções dos médicos de família (MF) relativamente ao tratamento e gestão do doente com DPOC – e aos responsáveis pelos programas de RR – no sentido de avaliar a capacidade instalada de cada programa de RR, dificuldades de resposta e de participação de doentes com DPOC no mesmo. RESULTADOS: Poucos MF estiverem presentes em actividades de formação sobre a DPOC e parece existir um baixo nível de conhecimento dos MF acerca da RR, em geral, o que se verificou estar correlacionado (p=,000) com a baixa referenciação de doentes com DPOC para RR (9%). A oferta de RR é considerada pela maior parte dos profissionais (MF e responsáveis) como Insuficiente ou Muito insuficiente e o número de doentes com DPOC com recurso a RR anualmente nas instituições participantes é, na maior parte, reduzido (<80). Existe, além disso, um conjunto de importantes determinantes estruturais, associados ao profissional e ao doente que constituem barreiras à referenciação e participação dos doentes em RR. CONCLUSÕES: Verifica-se uma diferença significativa entre o número de doentes com DPOC registados nos cuidados de saúde primários (CSP) e o número de doentes com recurso a RR anualmente e apenas uma pequena percentagem de doentes com DPOC que beneficiariam da participação em RR está, actualmente, a ter acesso a esta intervenção em Portugal, o que pode ser justificado por diversos aspectos, como o grau de conhecimento do médico, dificuldades económicas do doente, entre outros.

Multi-GPU support on the marrow algorithmic skeleton framework

Dissertação para obtenção do Grau de Mestre em Engenharia Informática

A framework for developing motion-based games

Dissertação para obtenção do Grau de Mestre em Engenharia Informática

Life (dis)satisfaction and the decision to migrate: Evidence from Central and Eastern Europe

This paper provides empirical evidence of the impact of life satisfaction on the individual intention to migrate. The impacts of individual characteristics and of country macroeconomic variables on the intention to migrate are analyzed jointly. Differently from other studies, we allow for life satisfaction to serve as a mediator between macroeconomic variables and the intention to migrate. Using the Eurobarometer Survey for 27 Central Eastern European (CEE) and Western European (non-CEE) countries, we find that people have a higher intention to migrate when dissatisfied with life. The socio-economic variables and macroeconomic conditions have an effect on the intention to migrate indirectly through life satisfaction. The impact of life satisfaction on the intention to migrate for middle-aged individuals with past experience of migration, low level of education, and with a low or average income from urban areas is higher in CEE countries than in non-CEE countries.

Electrodialytic remediation of two types of air pollution control residues and their applicability in construction materials

Dissertação para obtenção do Grau de Mestre em Engenharia do Ambiente Perfil de Engenharia de Sistemas Ambientais