Long-term behaviour of railway transitions under dynamic loading application to soft soil sites

Dissertação para obtenção do Grau de Doutor em Engenharia Civil

Mining protein structure data

The principal topic of this work is the application of data mining techniques, in particular of machine learning, to the discovery of knowledge in a protein database. In the first chapter a general background is presented. Namely, in section 1.1 we overview the methodology of a Data Mining project and its main algorithms. In section 1.2 an introduction to the proteins and its supporting file formats is outlined. This chapter is concluded with section 1.3 which defines that main problem we pretend to address with this work: determine if an amino acid is exposed or buried in a protein, in a discrete way (i.e.: not continuous), for five exposition levels: 2%, 10%, 20%, 25% and 30%. In the second chapter, following closely the CRISP-DM methodology, whole the process of construction the database that supported this work is presented. Namely, it is described the process of loading data from the Protein Data Bank, DSSP and SCOP. Then an initial data exploration is performed and a simple prediction model (baseline) of the relative solvent accessibility of an amino acid is introduced. It is also introduced the Data Mining Table Creator, a program developed to produce the data mining tables required for this problem. In the third chapter the results obtained are analyzed with statistical significance tests. Initially the several used classifiers (Neural Networks, C5.0, CART and Chaid) are compared and it is concluded that C5.0 is the most suitable for the problem at stake. It is also compared the influence of parameters like the amino acid information level, the amino acid window size and the SCOP class type in the accuracy of the predictive models. The fourth chapter starts with a brief revision of the literature about amino acid relative solvent accessibility. Then, we overview the main results achieved and finally discuss about possible future work. The fifth and last chapter consists of appendices. Appendix A has the schema of the database that supported this thesis. Appendix B has a set of tables with additional information. Appendix C describes the software provided in the DVD accompanying this thesis that allows the reconstruction of the present work.

Estratigrafia do Caloviano do Algarve oriental

The comparative study of the Callovian sections in eastern Algarve allowed us to demonstrate that the discontinuity surface at the base of Malm lies always over the Lower-Callovian, as opposite to what happens in western Algarve; the Bathonian-Callovian transition, continuous in western Algarve (Mareta beach) is marked, in eastern Algarve, by a generalised discontinuity of variable vertical extention. It is verified that, in eastern Algarve, the Callovian formations are always or at the nucleus of anticlinal structures, probably linked to halokinetic tectonic activity, or in large radins folds derived from compressive phases.

Synthesis of the Piacenzian onshore record between the Aveiro and Setubal parallels (Western portuguese margin)

Onshore, the Piacenzianof the Mondego and Lower Tagus Tertiary basins comprises siliciclastic sediments deposited in shallow marine to continental environments. The outcrops of the deposits are relatively widespread in the Aveiro and Seuibal region. A lithostratigraphic synthesis based on the correlation of geological sections, is presented for the two basins. In general, the Piacenzian sediments display a regressive sucession. The Late Tortonian-Zanclean (?) confined drainage pattern changed at the beginning of Piazencian, to fluvial systems draining to the Atlantic, and capturing the drainage of the inner parts of the Hesperic Meseta. The Piacenzian sedimentary sequence post-dates one of the uprising phases during Neogene compression, recorded by a strong regional unconformity. Some local active faulting - as in Lousa, Rio Maior and Senibal- Pinhal Novo - allowed the local thickening of the sedimentary record. Later compressive tectonism continues to generate reverse faulting and diapiric reactivation, affecting those sediments. Currently, the Piacenzian deposits culminates the marginal piedmonts, widely eroded by the Quaternary fluvial dissection.

Synthesis of the Piacenzian onshore record between the Aveiro and Setúbal parallels (Western portuguese margin)

Onshore, the Piacenzian of the Mondego and Lower Tagus Tertiary basins comprises siliciclastic sediments deposited in shallow marine to continental environments. The outcrops of the deposits are relatively widespread in the Aveiro and Setúbal region. A lithostratigraphic synthesis based on the correlation of geological sections, is presented for the two basins. In general, the Piacenzian sediments display a regressive sucession. The Late Tortonian-Zanclean (?) confined drainage pattern changed at the beginning of Piazencian, to fluvial systems draining to the Atlantic, and capturing the drainage of the inner parts of the Hesperic Meseta. The Piacenzian sedimentary sequence post-dates one of the uprising phases during Neogene compression, recorded by a strong regional unconformity. Some local active faulting - as in Lousa, Rio Maior and Senibal- Pinhal Novo - allowed the local thickening of the sedimentary record. Later compressive tectonism continues to generate reverse faulting and diapiric reactivation, affecting those sediments. Currently, the Piacenzian deposits culminates the marginal piedmonts, widely eroded by the Quaternary fluvial dissection.

Estratigrafia sismica do cenozóico na plataforma continental algarvia: interpretação do controle tectónico da sedimentação

The interpretation of 64 seismic reflection profiles in the Algarve continental platform (36º 20'-37º 00' paralels and 7º 20'-8º 40' meridians) calibrated with five petroleum exploration wells, with the identification of the geometric relations between six Cenozoic seismic units (B to G) and tectonic structures, allowed the construction of sucessive time-isopach maps (twt/s) and detailed interpretation of the geologic evolution. Two major tectonic structures were identified: a) the Portimão-Monchique fracture zone (striking N-S); b) an off-shore NW-SE fault zone, probably the S. Marcos-Quarteira fault. This accident separates two tectonic domains: the western domain (with N-S and E-W predominant structures and, secondarily, NW-SE and NE-SW) and the eastern domain (dominated by WSW-ENE, NW-SE, NE-SW, NNE-SSW and NNW-SSE structures). A persistent halokinetic activity had two major moments: a) sin-C unit; b) sin- and post-E unit. An increasing flexuration of the margin was identified, with spacial and temporal variation of the subsidence. The tectonic regime is considered as generally compressive, but the interpretation of the successíve stress-fields is rendered dificult by the existence of tectonic sub-domains and evaporitic structures.

The three main marine depositional cycles of the Neogene of Portugal

The present work follows a stratigraphic model for the marine Neogene of Portugal based on the definition of three main marine sedimentary cycles. Conceptually the I, II and III Neogene Cycles can be defined as 2nd order sedimentary sequences with duration ranging from 5 to 8 Ma. The I Neogene Cycle is fully represented only in the Lower Tagus Basin. Ranging from the Early Aquitanian to the Late Burdigalian the I Neogene Cycle testify a transgressive episode in the region of Lisbon and Setúbal Peninsula. Rapid lateral facies variations suggest a shallowmarine basin. This cycle ends with an important Late Burdigalian tectonic compressive event expressed by uplift of the surrounding areas and deformation affecting the Early Miocene deposits of the Arrábida Chain. The II Neogene Cycle includes thick sedimentary sequences covering Paleozoic and Mesozoic formations in the Algarve and Alvalade-Melides regions and it extends as far north as Santarém in the Lower Tagus Basin. Mainly controlled by global eustasy, it was generated by the important positive eustatic trend that characterized the Middle Miocene worldwide to which the Portuguese continental margin acted more or less passively. This cycle ended with a second and the most important compression event starting after the end of the Serravallian affecting the entire Portuguese onshore and shelf areas. This led to an important depositional hiatus of marine sediments for more than 2.5 Ma. During the Early and the Middle Tortonian occurred the clockwise rotation of the Guadalquivir Basin. The thickmarine units deposited afterwards in this basin produced a litostatic load, which seems to have induced subsidence farther west resuming the Neogene marine sedimentation in the Cacela region (Eastern Algarve), during the Late Tortonian. This marks the beginning of the III Neogene Cycle. To the north, in the Sado Basin (Alvalade-Melides region), a similar depositional sequence starts its sedimentation during the Messinian. Further north, in the Pombal-Caldas da Rainha region, marine sedimentation started during the Late Pliocene (Piacenzian). The migration in time, from south to north for the beginning of the marine sedimentation of this cycle is interpreted as reflecting a visco-elastic propagation of the deformation from the Betic chain northwards.

Tectónica da região de Sintra

Photo-interpretation of aerial stereopairs of the Sintra region on the approx. 1/32 000 scale together with field work allowed the production of the present Tectonic Map of the Sintra region. It is now possible to separate structures which resulted from two different tectonic events: one, corresponding to the intrusion of the Late Cretaceous Sintra igneous diapir, and the other the Miocene compressive event, the most important tectonic inversion phase of the Lusitanian Basin. The former are present to the south, southeast and east of the intrusion and within the intrusion itself, affecting the peripheral granites and their contacts with the gabbro-syenite core. These structures comprehend: i) faults and conical fractures striking parallel to the massif boundary, which were intruded by dykes, ii) vertical faults and fractures of two conjugate sets, dextral NNW-SSE and sinistral NNE-SSW. These faults are certainly associated with the E-W striking massif's northwards directed thrust and indicate a N-S oriented horizontal maximum compressive stress. The Miocene compressive event reactivated most of the inherited structures as follows. The NNWSSE faults located on the Sintra southern platform were reactivated as dextral strike slip faults and the E-W thrust along the northern boundary of the massif was also reactivated. This thrust propagated to the east. It also enhanced the asymmetry of the rim-syncline, uplifted the massif and reactivated the NNE-SSW faults as sinistral lateral ramps, which also accommodated vertical throw. The present Tectonic Map of Sintra together with the available geophysical data (MOREIRA, 1984, KULLBERG et al., 1991, SILVA & MIRANDA, 1994) allowed reassessment of the models proposed for the emplacement of the Sintra, Sines and Monchique igneous massifs, which intruded during Late Cretaceous times along the deep dextral NNW-SSE oriented strike slip fault (RIBEIRO et al., 1979; TERRINHA, 1998; TERRINHA & KULLBERG, 1998).

Interpretação tectónica de um conjunto de lineamentos WNW-ESE observados em imagens landsat da margem oeste ibérica

The existence of satellite images ofthe West Iberian Margin allowed comparative study of images as a tool applied to structural geology. Interpretation of LANDSAT images of the Lusitanian Basin domain showed the existence of a not previously described WNW-ESE trending set oflineaments. These lineaments are persistent and only observable on small scale images (e.g. approx. 11200000 and 11500 000) with various radiometric characteristics. They are approximately 20 km long, trend l200±15° and cross cut any other families oflineaments. The fact that these lineaments are perpendicular to the Quaternary thrusts of the Lower Tagus Valley and also because they show no off-set across them, suggests that they resulted from intersection oflarge tensile fractures on the earth's surface. It is proposed in this work that these lineaments formed on a crustal flexure of tens ofkm long, associated with the Quaternary WNW-ESE oriented maximum compressive stress on the West Iberian Margin. The maximum compressive stress rotated anticlockwise from a NW -SE orientation to approximately WNW-ESE, from Late Miocene to Quaternary times (RIBEIRO et aI., 1996). Field inspection of the lineaments revealed zones of norm~1.J. faulting and cataclasis, which are coincident with the lineaments and affect sediments of upper Miocene up to Quaternary age. These deformation structures show localized extension perpendicular to the lineaments, i.e. perpendicular to the maximum compressive direction, after recent stress data along the West Portuguese Margin (CABRAL & RIBEIRO, 1989; RIBEIRO et at., 1996). Also, on a first approach, the geographical distribution of these lineaments correlates well with earthquake epicenters and areas of largest Quaternary Vertical Movements within the inverted Lusitanian Basin (CABRAL, 1995).

Vibration control with shape-memory alloys in civil engineering structures

Dissertação apresentada à Faculdade de Ciências e Tecnologia da Universidade Nova de Lisboa para obtenção do grau de Doutor em Engenharia Civil