Structural stability of adenylate kinase from the sulfate-reducing bacteria Desulfovibrio gigas

Biophysical Chemistry 110 (2004) 83–92

Development of 2-oxazoline-based hydrogels and porous polyester microparticles in scCO2

Thesis submitted to Faculdade de Ciências e Tecnologia from Universidade Nova de Lisboa in partial fulfillment of the requirements for the obtention of the degree of Master of Science in Biotechnology

Development of composite particles for pulmonary delivery

In this work, biocompatible and biodegradable poly(D-L-lactide-co-glycolide) (PLGA) microparticles with the potential for use as a controlled release system of vaccines and other drugs to the lung were manufactured using supercritical CO2, through the Supercritical Assisted Atomization (SAA) technique. After performing a controlled variance in production parameters (temperature, pressure, CO2/solution flow ratio) PLGA microparticles were characterized and later used to encapsulate active pharmaceutical ingredients (API). Bovine serum albumin (BSA) was chosen as model protein and vaccine, while sildenafil was the chosen drug to treat pulmonary artery hypertension and their effect on the particles characteristics was evaluated. All the produced formulations were characterized in relation to their morphology (Morphologi G3 and scanning electronic microscopy (SEM)), to their physical-chemical properties (X-ray diffraction (XRD, differential scanning calorimetry (DSC), Fourier transform infrared (FTIR)) and aerodynamic performance using an in vitro aerosolization study – Andersen cascade impactor (ACI) - to obtain data such as the fine particle fraction (FPF) and the mass median aerodynamic diameter (MMAD). Furthermore, pharmacokinetic, biodegradability and biocompatibility tests were performed in order to verify the particle suitability for inhalation. The resulting particles showed aerodynamic diameters between the 3 and 5 μm, yields up to 58% and FPF percentages rounding the 30%. Taken as a whole, the produced microparticles do present the necessary requests to make them appropriate for pulmonary delivery.

Desenvolvimento piloto de novas tipologias de fibras sintéticas

O presente trabalho, desenvolvido nas instalações da FISIPE, teve como objectivo a caracterização de fibra oxidada (FOX),actualmente em desenvolvimento, com vista ao controlo de processo e de qualidade, e centrou-se em quatro parâmetros: i. Densidade; ii. Índice de Aromaticidade; iii. Índice de Oxigénio Limitante; iv. Grupos funcionais. No estudo da densidade realizou-se: a. Consolidação do método actualmente usado na empresa, observando-se uma redução da incerteza para metade (±0,005 gcm-3). b. Análise de diferentes amostras de FOX que apresentaram valores entre 1,348-1,387 gcm-3, que atendendo à incerteza do método, se encontram dentro dos valores de referência (1,35-1,39 gcm-3). c. Previsão de densidades ao longo da etapa de estabilização oxidativa. Confirmou-se ser apenas possível pela expressão apresentada numa das fontes consultada. Para o Índice de Aromaticidade (AI) efectuou-se: a. Estudo de quatro métodos de integração de curvas de DSC para determinação do calor de combustão que permite determinar o AI. Verificou-se que o mais indicado seria o uso da temperatura de on-set como limite inferior à linha de base de integração. b. Análise de diferentes amostras de FOX, observando-se valores de AI entre os 66% e 81%. Na determinação do Índice de Oxigénio Limitante, parâmetro exclusivo de qualidade, analisaram-se amostras de cabo pela adaptação da norma ASTM D 2863-06a. Obtiveram-se valores acima dos 40%O2 para a fibra oxidada. Para a verificação dos grupos funcionais realizou-se: a. Análise de FTIR, confirmando-se o desaparecimento de grupos nitrilo em função do tempo de oxidação, e a formação de bandas conjugadas e sobrepostas, indicando a presença de estruturas ciclizadas e aromatizadas. b. Proposta de um mecanismo reaccional para a reacção de oxidação de uma determinada fibra precursora. Com o intuito de minimizar o tempo de caracterização das FOX, procurou-se ainda encontrar uma correlação entre a densidade e o Índice de Aromaticidade, tanto ao longo da etapa de oxidação, como da fibra oxidada final. Conclui-se que não é possível estabelecer uma relação matemática para as amostras analisadas.

Design of bio-inspired ionic liquids for protein stabilisation

Ionic Liquids (ILs) consist in organic salts that are liquid at/or near room temperature. Since ILs are entirely composed of ions, the formation of ion pairs is expected to be one essential feature for describing solvation in ILs. In recent years, protein - ionic liquid (P-IL) interactions have been the subject of intensive studies mainly because of their capability to promote folding/unfolding of proteins. However, the ion pairs and their lifetimes in ILs in P-IL thematic is dismissed, since the action of ILs is therefore the result of a subtle equilibrium between anion-cation interaction, ion-solvent and ion-protein interaction. The work developed in this thesis innovates in this thematic, once the design of ILs for protein stabilisation was bio-inspired in the high concentration of organic charged metabolites found in cell milieu. Although this perception is overlooked, those combined concentrations have been estimated to be ~300 mM among the macromolecules at concentrations exceeding 300 g/L (macromolecular crowding) and transient ion-pair can naturally occur with a potential specific biological role. Hence the main objective of this work is to develop new bio-ILs with a detectable ion-pair and understand its effects on protein structure and stability, under crowding environment, using advanced NMR techniques and calorimetric techniques. The choline-glutamate ([Ch][Glu]) IL was synthesized and characterized. The ion-pair was detected in water solutions using mainly the selective NOE NMR technique. Through the same technique, it was possible to detect a similar ion-pair promotion under synthetic and natural crowding environments. Using NMR spectroscopy (protein diffusion, HSQC experiments, and hydrogen-deuterium exchange) and differential scanning calorimetry (DSC), the model protein GB1 (production and purification in isotopic enrichment media) it was studied in the presence of [Ch][Glu] under macromolecular crowding conditions (PEG, BSA, lysozyme). Under dilute condition, it is possible to assert that the [Ch][Glu] induces a preferential hydration by weak and non-specific interactions, which leads to a significant stabilisation. On the other hand, under crowding environment, the [Ch][Glu] ion pair is promoted, destabilising the protein by favourable weak hydrophobic interactions , which disrupt the hydration layer of the protein. However, this capability can mitigates the effect of protein crowders. Overall, this work explored the ion-pair existence and its consequences on proteins in conditions similar to cell milieu. In this way, the charged metabolites found in cell can be understood as key for protein stabilisation.