Microscopy image segmentation by active contour models

In this thesis a semi-automated cell analysis system is described through image processing. To achieve this, an image processing algorithm was studied in order to segment cells in a semi-automatic way. The main goal of this analysis is to increase the performance of cell image segmentation process, without affecting the results in a significant way. Even though, a totally manual system has the ability of producing the best results, it has the disadvantage of taking too long and being repetitive, when a large number of images need to be processed. An active contour algorithm was tested in a sequence of images taken by a microscope. This algorithm, more commonly known as snakes, allowed the user to define an initial region in which the cell was incorporated. Then, the algorithm would run several times, making the initial region contours to converge to the cell boundaries. With the final contour, it was possible to extract region properties and produce statistical data. This data allowed to say that this algorithm produces similar results to a purely manual system but at a faster rate. On the other hand, it is slower than a purely automatic way but it allows the user to adjust the contour, making it more versatile and tolerant to image variations.

Improved polymeric medical devices for active substances delivery

The work presented in this thesis was developed in collaboration with a Portuguese company, BeyonDevices, devoted to pharmaceutical packaging, medical technology and device industry. Specifically, the composition impact and surface modification of two polymeric medical devices from the company were studied: inhalers and vaginal applicators. The polyethylene-based vaginal applicator was modified using supercritical fluid technology to acquire self-cleaning properties and prevent the transport of bacteria and yeasts to vaginal flora. For that, in-situ polymerization of 2-substituted oxazolines was performed within the polyethylene matrix using supercritical carbon dioxide. The cationic ring-opening polymerization process was followed by end-capping with N,N-dimethyldodecylamine. Furthermore, for the same propose, the polyethylene matrix was impregnated with lavender oil in supercritical medium. The obtained materials were characterized physical and morphologically and the antimicrobial activity against bacteria and yeasts was accessed. Materials modified using 2-substituted oxazolines showed an effective killing ability for all the tested microorganisms, while the materials modified with lavender oil did not show antimicrobial activity. Only materials modified with oligo(2-ethyl-2-oxazoline) maintain the activity during the long term stability. Furthermore, the cytotoxicity of the materials was tested, confirming their biocompatibilty. Regarding the inhaler, its surface was modified in order to improve powder flowability and consequently, to reduce powder retention in the inhaler´s nozzle. New dry powder inhalers (DPIs), with different needle’s diameters, were evaluated in terms of internal resistance and uniformity of the emitted dose. It was observed that they present a mean resistance of 0.06 cmH2O0.5/(L/min) and the maximum emitted dose obtained was 68.9% for the inhaler with higher needle´s diameter (2 mm). Thus, this inhaler was used as a test and modified by the coating with a commonly-used force control agent, magnesium stearate, dried with supercritical carbon dioxide (scCO2) and the uniformity of delivered dose tests were repeated. The modified inhaler showed an increase in emitted dose from 68.9% to 71.3% for lactose and from 30.0% to 33.7% for Foradil.

O Mobiliário do Antigo Egipto no Império Novo. Análise Material e Simbólica

A presente dissertação reflecte a compilação de um estudo essencialmente bibliográfico e iconográfico de doze peças de mobiliário do antigo Egipto, Império Novo. É primeiramente apresentado um breve estudo sobre materiais usados para a construção dos diversos objectos produzidos no referido período histórico e analisados os seus aspectos simbólicos. São também apresentadas sucintamente algumas técnicas de construção adoptadas durante as dinastias XVIII-XX para a construção de mobiliário doméstico e ritual. De seguida estes objectos são analisados material e simbolicamente em dois capítulos tendo como base a investigação efectuada. Colocam-se ao longo deste trabalho diversas questões, sendo as mais prementes “se terá havido transferência de mobiliário doméstico para o contexto funerário” e “Terão tido os espólios funerários mobiliário feito exclusivamente para esse fim”. As conclusões revelam dados comparativos do universo de peças de mobiliário recolhidas e apresentam algumas hipóteses explicativas sobre o assunto abordado.

Aqueous biphasic system based on cholinium ionic liquids: extraction of biologically active phenolic acids

Phenolic acids are aromatic secondary plant metabolites, widely spread throughout the plant kingdom. Due to their biological and pharmacological properties, they have been playing an important role in phytotherapy and consequently techniques for their separation and purification are in need. This thesis aims at exploring new sustainable separation processes based on ionic liquids (ILs) in the extraction of biologically active phenolic acids. For that purpose, three phenolic acids with similar chemical structures were selected: cinnamic acid, p-coumaric acid and caffeic acid. In the last years, it has been shown that ionic liquids-based aqueous biphasic systems (ABSs) are valid alternatives for the extraction, recovery and purification of biomolecules when compared to conventional ABS or extractions carried out with organic solvents. In particular, cholinium-based ILs represent a clear step towards a greener chemistry, while providing means for the implementation of efficient techniques for the separation and purification of biomolecules. In this work, ABSs were implemented using cholinium carboxylate ILs using either high charge density inorganic salt (K3PO4) or polyethylene glycol (PEG) to promote the phase separation of aqueous solutions containing three different phenolic acids. These systems allow for the evaluation of effect of chemical structure of the anion on the extraction efficiency. Only one imidazolium-based IL was used in order to establish the effect of the cation chemical structure. The selective extraction of one single acid was also researched. Overall, it was observed that phenolic acids display very complex behaviours in aqueous solutions, from dimerization to polymerization and also hetero-association are quite frequent phenomena, depending on the pH conditions. These phenomena greatly hinder the correct quantification of these acids in solution.

Provide instructions and resources for assessment and training in earth building: the Pirate project

This publication reflects the views only of the authors, and the Commission cannot be held responsible for any use which may be made of the information contained therein.

Avaliações in vitro da utilização da gelatina como material de suporte à regeneração de tecidos

Neste trabalho foram produzidas matrizes de nanofibras de gelatina de porco e de gelatina de peixe através da técnica de electrofiação. Estas matrizes têm uma estrutura morfológica e química interessantes para o desenvolvimento de scaffolds no âmbito da Engenharia de Tecidos mas a sua instabilidade em água compromete essa aplicação. Assim, as matrizes foram reticuladas recorrendo a dois processos diferentes: um físico (tratamento desidrotérmico - DHT) e outro químico (exposição a vapor de glutaraldeído - GTA). Os resultados obtidos permitiram verificar que a gelatina de porco reticulou mais facilmente que a gelatina de peixe, provavelmente devido a uma maior presença de grupos funcionais capazes de reagir com os processos de reticulação. Foram analisados possíveis efeitos citotóxicos das matrizes reticuladas em culturas de células Vero. Os extratos das matrizes não revelaram ser tóxicos mas o tratamento com GTA comprometeu a adesão das células às matrizes indicando acarretar um certo risco de toxicidade. O uso da glicina revelou-se eficaz na redução dessa toxicidade. Para além das matrizes de fibras sem orientação preferencial (depositadas num coletor plano), foram depositadas fibras paralelamente alinhadas recorrendo a um coletor cilíndrico rotatório. Marcações fluorescentes de células semeadas nos dois tipos de fibras revelaram que o citoesqueleto das células semeadas nas fibras alinhadas se organiza na direção do alinhamento.

Development of novel active pharmaceutical ionic liquids and salts based on antibiotics and anti-fungal drugs

Ionic Liquids (ILs) are class of compounds, which have become popular since the mid-1990s. Despite the fact that ILs are defined by one physical property (melting point), many of the potential applications are now related to their biological properties. The use of a drug as a liquid can avoid some problems related to polymorphism which can influence a drug´s solubility and thus its dosages. Also, the arrangement of the anion or cation with a specific drug might be relevant in order to: a) change the correspondent biopharmaceutical drug classification system; b) for the drug formulation process and c) the change the Active Pharmaceutical Ingredients’ (APIs). The main goal of this Thesis is the synthesis and study of physicochemical and biological properties of ILs as APIs from beta-lactam antibiotics (ampicillin, penicillin G and amoxicillin) and from the anti-fungal Amphotericin B. All the APIs used here were neutralized in a buffer appropriate hydroxide cations. The cation hydroxide was obtained on Amberlite resin (in the OH form) in order to exchange halides. The biological studies of these new compounds were made using techniques like the micro dilution and colorimetric methods. Overall a total of 19 new ILs were synthesised (6 ILs based on ampicillin, 4 ILs, based on amoxicillin, 6 ILs based on penicillin G and 4 ILs based on amphotericin B) and characterized by spectroscopic and analytical methods in order to confirm their structure and purity. The study of the biological properties of the synthesised ILs showed that some have antimicrobial activity against bacteria and yeast cells, even in resistant bacteria. Also this work allowed to show that ILs based on ampicillin could be used as anti-tumour agents. This proves that with a careful selection of the organic cation, it is possible to provoke important physico-chemical and biological alteration in the properties of ILs-APIs with great impact, having in mind their applications.

Analysis, testing and development of safe cleaning methods of rusted stone material

Three different treatments were applied on several specimens of dolomitic and calcitic marble, properly stained with rust to mimic real situations (the stone specimens were exposed to the natural environment for about six months in contact with rusted iron). Thirty six marble specimens, eighteen calcitic and eighteen dolomitic, were characterized before and after treatment and monitored throughout the cleaning tests. The specimens were characterized by SEM-EDS (Scanning Electron Microscopy coupled with Energy Dispersion System), XRD (XRay Diffraction), XRF (X-Ray Fluorescence), FTIR (Fourier Transform Infrared Spectroscopy) and color measurements. It was also made a microscopic and macroscopic analysis of the stone surface along with the tests of short and long term capillary absorption. A series of test trials were conducted in order to understand which concentrations and contact times best suits to this purpose, to confirm what had been written to date in the literature. We sought to develop new methods of treatment application, skipping the usual methods of applying chemical treatments on stone substrates, with the use of cellulose poultice, resorting to the agar, a gel already used in many other areas, being something new in this area, which possesses great applicability in the field of conservation of stone materials. After the application of the best methodology for cleaning, specimens were characterized again in order to understand which treatment was more effective and less harmful, both for the operator and the stone material. Very briefly conclusions were that for a very intense and deep penetration into the stone, a solution of 3.5% of SDT buffered with ammonium carbonate to pH around 7 applied with agar support would be indicated. For rust stains in its initial state, the use of Ammonium citrate at a concentration of 5% buffered with ammonium to pH 7 could be applied more than once until satisfactory results appear.

Indexing and active fund management: International evidence

Author's pre-print

Momentum risk: An approach following the correlations between active stocks

The momentum anomaly has been widely documented in the literature. However, there are still many issues where there is no consensus and puzzles left unexplained. One is that strategies based on momentum present a level of risk that is inconsistent with the diversification that it offers. Moreover, recent studies indicate that this risk is variable over time and mostly strategy-specific. This work project hypothesises and proves that this evidence is explained by the portfolio constitution of the momentum strategy over time, namely the covariance and correlation between companies in the top and down deciles and across them.

Produção de misturas betuminosas a quente com incorporação de material fresado

A incorporação de materiais reciclados na construção de estradas, como substituição de materiais virgens é percebida como uma oportunidade de economizar recursos, e evitar o impacto associado à sua extração e transporte. Desta forma, a incorporação de material fresado (do termo inglês RAP - Reclaimed Asphalt Pavement) em misturas betuminosas produzidas a quente em central tem sido uma alternativa satisfatória. Neste trabalho, foram estudadas três misturas betuminosas do tipo macadame betuminoso (AC 20 base 35/50), tradicional e com taxas de incorporação de RAP de 10% e 20%, com o objetivo de efetuar uma análise comparativa do seu comportamento. Começou-se por realizar um estudo Marshall de forma a determinar a percentagem ótima de betume a usar em cada mistura e, posteriormente, a composição foi transposta para central para o seu fabrico. No final foram realizados ensaios de caracterização mecânica sobre as misturas para avaliar o seu desempenho, através de ensaios de sensibilidade à água, módulo de rigidez, resistência à fadiga e à deformação permanente. Esta dissertação teve o apoio da empresa Tecnovia – Sociedade de Empreitadas S.A., com a disponibilização de instalações e materiais para o trabalho experimental. De acordo com os resultados obtidos, é possível concluir que as misturas recicladas apresentaram um comportamento satisfatório, quando comparado com as misturas tradicionais.

Non-gyrator type active inductors

Modern CMOS radio frequency (RF) Receivers have enabled efficient and increasing applications. The main requirement is to have system in a single chip, in order to minimize area and cost. For the purpose it is required the development of inductorless circuits for the key blocks of an RF receiver. Examples of this key blocks are RC oscillators, RF band pass filters, and Low Noise Amplifiers. The present dissertation presents an inductorless wideband MOSFET-only RF Non-Gyrator Type of Active Inductors with low area, low cost, and very low power, capable of covering the whole WMTS, and ISM, band and intended for biomedical applications. The proposed circuit is based on a floating capacitor connected between two controlled current sources. The first current source, which is controlled by the circuit input voltage, has two objectives: supply current to the capacitor (

Archaeological Remains Accounting for the Presence and Exploitation of the North Atlantic Right Whale Eubalaena glacialis on the Portuguese Coast (Peniche, West Iberia), 16th to 17th Century

The former occurrence of the North Atlantic right whale Eubalaena glacialis on the Portuguese coast may be inferred from the historical range of that species in Europe and in NW Africa. It is generally accepted that it was the main prey of coastal whaling in the Middle Ages and in the pre-modern period, but this assumption still needs firming up based on biological and archaeological evidence. We describe the skeletal remains of right whales excavated at Peniche in 2001-2002, in association with archaeological artefacts. The whale bones were covered by sandy sediments on the old seashore and they have been tentatively dated around the 16th to 17th centuries. This study contributes material evidence to the former occurrence of E. glacialis in Portugal (West Iberia). Some whale bones show unequivocal man-made scars. These are associated to wounds from instruments with a sharp-cutting blade. This evidence for past human interaction may suggest that whaling for that species was active at Peniche around the early 17th century.

Conservar depois da catástrofe. O caso dos documentos queimados do antigo Arquivo Histórico do Museu Bocage: caracterização material e proposta de um protocolo de intervenção

Tendo como caso de estudo um conjunto documental do Arquivo Histórico dos Museus da Universidade de Lisboa (AHMUL) – Museu Nacional de História Natural e da Ciência (MUHNAC), anteriormente fazendo parte do antigo Arquivo Histórico do Museu Bocage – fortemente atingido por um incêndio em 1978, o objectivo principal desta investigação é dar início à pesquisa e explorar a possibilidade de aplicação de métodos não invasivos de restauro digital, como a técnica de digitalização volumétrica (volumetric scanning), para a recuperação da informação escrita na parte mais deteriorada do arquivo; e propor métodos de estabilização/recuperação do seu suporte físico, usando técnicas tradicionais de conservação e restauro. Assim, o objectivo deste estudo não é apenas rever métodos de recuperação da informação para estes documentos tidos como perdidos, mas também propor uma forma de recuperar, tanto quanto possível, o seu suporte original. Será realizada a caracterização material da colecção, com recurso a métodos de exame e análise e o diagnóstico de conservação da parte da colecção mais deteriorada, bem como uma contextualização histórica sobre o arquivo e as condições do incêndio. Como conclusões principais salienta-se a confirmação da possibilidade de aplicação de técnicas de digitalização, os resultados promissores de outras técnicas como a fotografia de infravermelho com recurso adicional a software de processamento da imagem e o uso da imagem multiespectral em documentos carbonizados, além do estabelecimento de uma proposta de protocolo de intervenção para documentos queimados, com recurso a dois éteres de celulose, com diferentes solventes (água e etanol) de acordo com a solubilidade dos meios de escrita. Pretendeu-se ainda com este estudo contribuir para a divulgação da existência deste fundo do AHMUL em específico, tendo sido fundamental a realização, após 37 anos, do primeiro registo e compilação de fontes documentais sobre o incêndio de 18 de março de 1978, um facto tão relevante para a Memória do MUHNAC e dos Museus de Portugal.

Control of a white organic light emitting diode’s emission parameters using a single doped RGB active layer

White Color tuning is an attractive feature that Organic Light Emitting Diodes (OLEDs) offer. Up until now, there hasn’t been any report that mix both color tuning abilities with device stability. In this work, White OLEDs (W-OLEDs) based on a single RGB blend composed of a blue emitting N,N′-Di(1-naphthyl)-N,N′-diphenyl-(1,1′-biphenyl)-4,4′-diamine (NPB) doped with a green emitting Coumarin-153 and a red emitting 4-(Dicyanomethylene)-2-methyl-6-(4-dimethylaminostyryl)-4H-pyran (DCM1) dyes were produced. The final device structure was ITO/Blend/Bathocuproine (BCP)/ Tris(8-hydroxyquinolinato)aluminium (Alq3)/Al with an emission area of 0.25 cm2. The effects of the changing in DCM1’s concentration (from 0.5% to 1% wt.) allowed a tuning in the final white color resulting in devices capable of emitting a wide range of tunes – from cool to warm – while also keeping a low device complexity and a high stabilitty. Moreover, an explanation on the optoelectrical behavior of the device is presented. The best electroluminescense (EL) points toward 160 cd/m2 of brightness and 1.1 cd/A of efficiency, both prompted to being enhanced. An Impedance Spectroscopy (IS) analysis allowed to study both the effects of BCP as a Hole Blocking Layer and as an aging probe of the device. Finally, as a proof of concept, the emission was increased 9 and 64 times proving this structure can be effectively applied for general lighting.