GPU implementation of the simplex identification via split augmented Lagrangian

Hyperspectral imaging can be used for object detection and for discriminating between different objects based on their spectral characteristics. One of the main problems of hyperspectral data analysis is the presence of mixed pixels, due to the low spatial resolution of such images. This means that several spectrally pure signatures (endmembers) are combined into the same mixed pixel. Linear spectral unmixing follows an unsupervised approach which aims at inferring pure spectral signatures and their material fractions at each pixel of the scene. The huge data volumes acquired by such sensors put stringent requirements on processing and unmixing methods. This paper proposes an efficient implementation of a unsupervised linear unmixing method on GPUs using CUDA. The method finds the smallest simplex by solving a sequence of nonsmooth convex subproblems using variable splitting to obtain a constraint formulation, and then applying an augmented Lagrangian technique. The parallel implementation of SISAL presented in this work exploits the GPU architecture at low level, using shared memory and coalesced accesses to memory. The results herein presented indicate that the GPU implementation can significantly accelerate the method's execution over big datasets while maintaining the methods accuracy.

Parallel GPU architecture for hyperspectral unmixing based on augmented Lagrangian method

Hyperspectral imaging has become one of the main topics in remote sensing applications, which comprise hundreds of spectral bands at different (almost contiguous) wavelength channels over the same area generating large data volumes comprising several GBs per flight. This high spectral resolution can be used for object detection and for discriminate between different objects based on their spectral characteristics. One of the main problems involved in hyperspectral analysis is the presence of mixed pixels, which arise when the spacial resolution of the sensor is not able to separate spectrally distinct materials. Spectral unmixing is one of the most important task for hyperspectral data exploitation. However, the unmixing algorithms can be computationally very expensive, and even high power consuming, which compromises the use in applications under on-board constraints. In recent years, graphics processing units (GPUs) have evolved into highly parallel and programmable systems. Specifically, several hyperspectral imaging algorithms have shown to be able to benefit from this hardware taking advantage of the extremely high floating-point processing performance, compact size, huge memory bandwidth, and relatively low cost of these units, which make them appealing for onboard data processing. In this paper, we propose a parallel implementation of an augmented Lagragian based method for unsupervised hyperspectral linear unmixing on GPUs using CUDA. The method called simplex identification via split augmented Lagrangian (SISAL) aims to identify the endmembers of a scene, i.e., is able to unmix hyperspectral data sets in which the pure pixel assumption is violated. The efficient implementation of SISAL method presented in this work exploits the GPU architecture at low level, using shared memory and coalesced accesses to memory.

Signal subspace identification in hyperspectral imagery

Terrestrial remote sensing imagery involves the acquisition of information from the Earth's surface without physical contact with the area under study. Among the remote sensing modalities, hyperspectral imaging has recently emerged as a powerful passive technology. This technology has been widely used in the fields of urban and regional planning, water resource management, environmental monitoring, food safety, counterfeit drugs detection, oil spill and other types of chemical contamination detection, biological hazards prevention, and target detection for military and security purposes [2-9]. Hyperspectral sensors sample the reflected solar radiation from the Earth surface in the portion of the spectrum extending from the visible region through the near-infrared and mid-infrared (wavelengths between 0.3 and 2.5 µm) in hundreds of narrow (of the order of 10 nm) contiguous bands [10]. This high spectral resolution can be used for object detection and for discriminating between different objects based on their spectral xharacteristics [6]. However, this huge spectral resolution yields large amounts of data to be processed. For example, the Airbone Visible/Infrared Imaging Spectrometer (AVIRIS) [11] collects a 512 (along track) X 614 (across track) X 224 (bands) X 12 (bits) data cube in 5 s, corresponding to about 140 MBs. Similar data collection ratios are achieved by other spectrometers [12]. Such huge data volumes put stringent requirements on communications, storage, and processing. The problem of signal sbspace identification of hyperspectral data represents a crucial first step in many hypersctral processing algorithms such as target detection, change detection, classification, and unmixing. The identification of this subspace enables a correct dimensionality reduction (DR) yelding gains in data storage and retrieval and in computational time and complexity. Additionally, DR may also improve algorithms performance since it reduce data dimensionality without losses in the useful signal components. The computation of statistical estimates is a relevant example of the advantages of DR, since the number of samples required to obtain accurate estimates increases drastically with the dimmensionality of the data (Hughes phnomenon) [13].

Comparison of 2.3 & 5 mega pixel (MP) resolution monitors when detecting mammography image blurring

Background - Image blurring in Full Field Digital Mammography (FFDM) is reported to be a problem within many UK breast screening units resulting in significant proportion of technical repeats/recalls. Our study investigates monitors of differing pixel resolution, and whether there is a difference in blurring detection between a 2.3 MP technical review monitor and a 5MP standard reporting monitor. Methods - Simulation software was created to induce different magnitudes of blur on 20 artifact free FFDM screening images. 120 blurred and non-blurred images were randomized and displayed on the 2.3 and 5MP monitors; they were reviewed by 28 trained observers. Monitors were calibrated to the DICOM Grayscale Standard Display Function. T-test was used to determine whether significant differences exist in blurring detection between the monitors. Results - The blurring detection rate on the 2.3MP monitor for 0.2, 0.4, 0.6, 0.8 and 1 mm blur was 46, 59, 66, 77and 78% respectively; and on the 5MP monitor 44, 70, 83 , 96 and 98%. All the non-motion images were identified correctly. A statistical difference (p <0.01) in the blurring detection rate between the two monitors was demonstrated. Conclusions - Given the results of this study and knowing that monitors as low as 1 MP are used in clinical practice, we speculate that technical recall/repeat rates because of blurring could be reduced if higher resolution monitors are used for technical review at the time of imaging. Further work is needed to determine monitor minimum specification for visual blurring detection.

A method to determine the impact of visual function on lesion detection performance

There are few professions in which visual acuity is as important as it is to radiologists. The diagnostic decision making process is composed of a number of events (detection or observation, interpretation and reporting), where the detection phase is subject to a number of physical and psychological phenomena that are critical to the process. Visual acuity is one phenomenon that has often been overlooked, and there is very little research assessing the impact of reduced visual acuity on diagnostic performance. The aim of this study was to investigate the impact of reduced visual acuity on an observer’s ability to detect simulated nodules in an anthropomorphic chest phantom.

A method to determine the impact of reduced visual function on nodule detection performance

Purpose - In this study we aim to validate a method to assess the impact of reduced visual function and observer performance concurrently with a nodule detection task. Materials and methods - Three consultant radiologists completed a nodule detection task under three conditions: without visual defocus (0.00 Dioptres; D), and with two different magnitudes of visual defocus (−1.00 D and −2.00 D). Defocus was applied with lenses and visual function was assessed prior to each image evaluation. Observers evaluated the same cases on each occasion; this comprised of 50 abnormal cases containing 1–4 simulated nodules (5, 8, 10 and 12 mm spherical diameter, 100 HU) placed within a phantom, and 25 normal cases (images containing no nodules). Data was collected under the free-response paradigm and analysed using Rjafroc. A difference in nodule detection performance would be considered significant at p < 0.05. Results - All observers had acceptable visual function prior to beginning the nodule detection task. Visual acuity was reduced to an unacceptable level for two observers when defocussed to −1.00 D and for one observer when defocussed to −2.00 D. Stereoacuity was unacceptable for one observer when defocussed to −2.00 D. Despite unsatisfactory visual function in the presence of defocus we were unable to find a statistically significant difference in nodule detection performance (F(2,4) = 3.55, p = 0.130). Conclusion - A method to assess visual function and observer performance is proposed. In this pilot evaluation we were unable to detect any difference in nodule detection performance when using lenses to reduce visual function.

Diagnostic performance of visual screening tests in the elderly

The aging of Portuguese population is characterized by an increase of individuals aged older than 65 years. Preventable visual loss in older persons is an important public health problem. Tests used for vision screening should have a high degree of diagnostic validity confirmed by means of clinical trials. The primary aim of a screening program is the early detection of visual diseases. Between 20% and 50% of older people in the UK have undetected reduced vision and in most cases is correctable. Elderly patients do not receive a systematic eye examination unless a problem arises with their glasses or suspicion vision loss. This study aimed to determine and evaluate the diagnostic accuracy of visual screening tests for detecting vision loss in elderly. Furthermore, it pretends to define the ability to find the subjects affected with vision loss as positive and the subjects not affected with the same disease as negative. The ideal vision screening method should have high sensitivity and specificity for early detection of risk factors. It should be also low cost and easy to implement in all geographic and socioeconomic regions. Sensitivity is the ability of an examination to identify the presence of a given disease and specificity is the ability of the examination to identify the absence of a given disease. It was not an aim of this study to detect abnormalities that affect visual acuity. The aim of this study was to find out what´s the best test for the identification of any vision loss.

Global and local detection of liver steatosis from ultrasound

Liver steatosis is a common disease usually associated with social and genetic factors. Early detection and quantification is important since it can evolve to cirrhosis. Steatosis is usually a diffuse liver disease, since it is globally affected. However, steatosis can also be focal affecting only some foci difficult to discriminate. In both cases, steatosis is detected by laboratorial analysis and visual inspection of ultrasound images of the hepatic parenchyma. Liver biopsy is the most accurate diagnostic method but its invasive nature suggest the use of other non-invasive methods, while visual inspection of the ultrasound images is subjective and prone to error. In this paper a new Computer Aided Diagnosis (CAD) system for steatosis classification and analysis is presented, where the Bayes Factor, obatined from objective intensity and textural features extracted from US images of the liver, is computed in a local or global basis. The main goal is to provide the physician with an application to make it faster and accurate the diagnosis and quantification of steatosis, namely in a screening approach. The results showed an overall accuracy of 93.54% with a sensibility of 95.83% and 85.71% for normal and steatosis class, respectively. The proposed CAD system seemed suitable as a graphical display for steatosis classification and comparison with some of the most recent works in the literature is also presented.

Estrabismo, acuidade visual e erro refrativo não corrigido na criança em idade escolar

Preventable visual loss in children is an important public health problem. The critical period of susceptibility to deprivation or abnormal visual experience has been identified since the early 1970s. Preventable visual loss caused by amblyopia (0.3%–4%) and its risk factors such as strabismus (2.1%–4.6%) and uncorrected refractive errors (5%–7.7%) represent an important public health problem. Thus the primary justification for preschool vision screening is the detection of amblyopia or amblyogenic refractive, strabismic, or ocular disease conditions. However in Portugal there has been little investigation regarding prevalence of visual anomalies among school-age children. Data on the prevalence are lacking but are needed for planning vision services. Aims: 1) Determine the prevalence of strabismus; 2) Determine the prevalence of decreased visual acuity; 3) Determine the prevalence of uncorrected refractive error.

Visual functional analysis in medical imaging

Aims of study: 1) Describe the importance of human visual system on lesion detection in medical imaging perception research; 2) Discuss the relevance of research in medical imaging addressing visual function analysis; 3) Identify visual function tests which could be conducted on observers prior to participation in medical imaging perception research.

População residente de um hospital psiquiátrico: que saúde visual?

Introdução - Numa tentativa pioneira em Portugal de avaliar o estado da visão dos pacientes residentes de um Hospital Psiquiátrico, foi nosso objectivo identificar alterações visuais existentes nesta população, passíveis de comprometer o funcionamento do sistema visual e com repercussões negativas nas actividades da vida diária; caracterizar e corrigir ametropias; relacionar as patologias encontradas com a medicação e seleccionar! encaminhar os utentes para consulta de oftalmologia. Métodos - Foram examinados 254 pacientes residentes num Hospital Psiquiátrico de Lisboa, com idade compreendida entre os 25 e os 92 anos de idade, com diagnóstico no âmbito da saúde mental, capacidade de deslocação e alguma autonomia. Na recolha de dados foi utilizado o protocolo de observação do rastreio visual, tendo sido avaliados os seguintes parâmetros: Acuidade visual, Estudo refractivo; Função sensório-motora; Visão cromática; Segmento anterior; Tensão ocular. O rastreio foi composto por duas fases: uma primeira fase para identificação das alterações visuais, com 254 residentes e uma segunda fase, com 100 residentes, para correcção das ametropias diagnosticadas e prescrição óptica. Os resultados foram sujeitos a uma análise estatística descritiva e inferencial através do programa SPSS. Resultados - A maioria dos pacientes era do sexo masculino (64,2%), internados principalmente por esquizofrenia (47,24%) e medicados com antipsicóticos (82,8%) mas tomando também anti-parkinsónicos (62,3%) e ansiolíticos (52,4%). Apenas 20,87% da amostra tinha feito anteriormente um exame visual. Além de 33,86% de cataratas, em que 27,4% representam residentes entre os 20 e os 50 anos, encontraram-se acuidades visuais baixas. Para longe, 51% dos indivíduos apresentavam acuidade visual no intervalo entre contar dedos e os 6/10. No que concerne à acuidade visual para perto, os resultados obtidos demonstram que a maioria da população apresenta também baixa acuidade visual, entre os 1/10 e os 3/10, tanto para olho direito (25,59%), como para o olho esquerdo (26,38%). É de referir que esta baixa acuidade visual atinge um total de 27 indivíduos no intervalo dos 40 aos 59 anos. Foi ainda identificado um número expressivo de exoforias para perto (38,58%) e 7,15% de neuropatias glaucomatosas. Do estudo refractivo (2. Fase do rastreio visual), resultou a prescrição de 75 óculos, o que levou a uma melhoria significativa da acuidade visual, principalmente para perto: 50% da amostra que apresentava acuidade visual, no intervalo de percepção luminosa aos 6/10, passou a 3%, após correcção refractiva. No decurso do rastreio 5 residentes foram encaminhadas para o serviço de urgência por neuropatia glaucomatosa e melanoma da coróide. Apenas 5,5% teve alta e os restantes foram encaminhados para consulta de oftalmologia (34% com prioridade). Conclusões - Este rastreio permitiu além da correcção das ametropias diagnosticadas, encaminhar, os residentes com alterações visuais, para tratamento, possibilitando assim, que esta população use a sua visão da melhor maneira e potencializando um aumento da qualidade de vida destes pacientes.

Relação entre competências e prática profissional dos ortoptistas integrados nos programas de rastreio visual infantil

O presente estudo teve em vista estimar e analisar a possível relação entre as competências profissionais e as práticas dos Ortoptistas nos Programas de Rastreio Visual Infantil, com o objectivo de identificar e descrever as competências essenciais destes profissionais da saúde. Para o efeito, foi elaborado um quadro teórico apoiado na literatura, a partir do qual se definiram 3 dimensões de análise: Competências Sistémicas (ST), Competências Interpessoais (IP) e Competências instrumentais (IT). Com o recurso a uma entrevista colectiva específica conhecida por Focus Group, foi auscultada a percepção de um painel de especialistas sobre as competências profissionais que devem possuir os Ortoptistas que desempenham funções nos Programas de Rastreio Visual Infantil. Complementarmente, através de um inquérito por questionário, foi recolhida a percepção dos Ortoptistas sobre as competências profissionais que consideram possuir e a forma como as utilizam na sua prática profissional. As dimensões do questionário apresentaram a seguinte consistência interna: (ST)=0,916; (IP)=0,949; (IT)=0,892. Os resultados dos coeficientes de correlação de Spearman, sugerem a existência de uma correlação positiva moderada entre as competências profissionais e sua aplicação na prática profissional (r(ST)=0,634; r(IP)=0,61; r(IT)=0,606; p=0,000). Foram identificadas 5 competências essenciais, destacando-se na dimensão Competências Sistémicas a compreensão da visão binocular e a compreensão do papel da refracção na visão binocular. Com base nos resultados propõe-se um modelo de intervenção para o desenvolvimento de competências em contexto organizacional.

Diagnostic performance of visual screening tests in the elderly

This study aimed to determine and evaluate the diagnostic accuracy of visual screening tests for detecting vision loss in elderly. This study is defined as study of diagnostic performance. The diagnostic accuracy of 5 visual tests -near convergence point, near accommodation point, stereopsis, contrast sensibility and amsler grid—was evaluated by means of the ROC method (receiver operating characteristics curves), sensitivity, specificity, positive and negative likelihood ratios (LR+/LR−). Visual acuity was used as the reference standard. A sample of 44 elderly aged 76.7 years (±9.32), who were institutionalized, was collected. The curves of contrast sensitivity and stereopsis are the most accurate (area under the curves were 0.814−p = 0.001, C.I.95%[0.653;0.975]— and 0.713−p = 0.027, C.I.95%[0,540;0,887], respectively). The scores with the best diagnostic validity for the stereopsis test were 0.605 (sensitivity 0.87, specificity 0.54; LR+ 1.89, LR−0.24) and 0.610 (sensitivity 0.81, specificity 0.54; LR+1.75, LR−0.36). The scores with higher diagnostic validity for the contrast sensibility test were 0.530 (sensitivity 0.94, specificity 0.69; LR+ 3.04, LR−0.09). The contrast sensitivity and stereopsis test's proved to be clinically useful in detecting vision loss in the elderly.

Parental predictors of poor visual outcome with occlusion treatment for unilateral amblyopia

Aim: Visual acuity outcome of amblyopia treatment depends on the compliance. This study aimed to determine parental predictors of poor visual outcome with occlusion treatment in unilateral amblyopia and identify the relationship between occlusion recommendations and the patient's actual dose of occlusion reported by the parents. Methods: This study comprised three phases: refractive adaptation for a period of 18 weeks after spectacle correction; occlusion of 3 to 6 hours per day during a period of 6 months; questionnaire administration and completion by parents. Visual acuity as assessed using the Sheridan-Gardiner singles or Snellen acuity chart was used as a measure of visual outcome. Correlation analysis was used to describe the strength and direction of two variables: prescribed occlusion reported by the doctor and actual dose reported by parents. A logistic binary model was adjusted using the following variables: severity, vulnerability, self-efficacy, behaviour intentions, perceived efficacy and treatment barriers, parents' and childrens' age, and parents' level of education. Results: The study included 100 parents (mean age 38.9 years, SD approx 9.2) of 100 children (mean age 6.3 years, SD approx 2.4) with amblyopia. Twenty-eight percent of children had no improvement in visual acuity. The results showed a positive mild correlation (kappa = 0.54) between the prescribed occlusion and actual dose reported by parents. Three predictors for poor visual outcome with occlusion were identified: parents' level of education (OR = 9.28; 95%CI 1.32-65.41); treatment barriers (OR = 2.75; 95%CI 1.22-6.20); interaction between severity and vulnerability (OR = 3.64; 95%CI 1.21-10.93). Severity (OR = 0.07; 95%CI 0.00-0.72) and vulnerability (OR = 0.06; 95%CI 0.05-0.74) when considered in isolation were identified as protective factors. Conclusions: Parents frequently do not use the correct dosage of occlusion as recommended. Parents' educational level and awareness of treatment barriers were predictors of poor visual outcome. Lower levels of education represented a 9-times higher risk of having a poor visual outcome with occlusion treatment.