Convex Total Variation Denoising of Poisson Fluorescence Confocal Images With Anisotropic Filtering

Fluorescence confocal microscopy (FCM) is now one of the most important tools in biomedicine research. In fact, it makes it possible to accurately study the dynamic processes occurring inside the cell and its nucleus by following the motion of fluorescent molecules over time. Due to the small amount of acquired radiation and the huge optical and electronics amplification, the FCM images are usually corrupted by a severe type of Poisson noise. This noise may be even more damaging when very low intensity incident radiation is used to avoid phototoxicity. In this paper, a Bayesian algorithm is proposed to remove the Poisson intensity dependent noise corrupting the FCM image sequences. The observations are organized in a 3-D tensor where each plane is one of the images acquired along the time of a cell nucleus using the fluorescence loss in photobleaching (FLIP) technique. The method removes simultaneously the noise by considering different spatial and temporal correlations. This is accomplished by using an anisotropic 3-D filter that may be separately tuned in space and in time dimensions. Tests using synthetic and real data are described and presented to illustrate the application of the algorithm. A comparison with several state-of-the-art algorithms is also presented.

Fluorescence Microscopy Imaging Denoising with Log-Euclidean Priors and Photobleaching Compensation

Fluorescent protein microscopy imaging is nowadays one of the most important tools in biomedical research. However, the resulting images present a low signal to noise ratio and a time intensity decay due to the photobleaching effect. This phenomenon is a consequence of the decreasing on the radiation emission efficiency of the tagging protein. This occurs because the fluorophore permanently loses its ability to fluoresce, due to photochemical reactions induced by the incident light. The Poisson multiplicative noise that corrupts these images, in addition with its quality degradation due to photobleaching, make long time biological observation processes very difficult. In this paper a denoising algorithm for Poisson data, where the photobleaching effect is explicitly taken into account, is described. The algorithm is designed in a Bayesian framework where the data fidelity term models the Poisson noise generation process as well as the exponential intensity decay caused by the photobleaching. The prior term is conceived with Gibbs priors and log-Euclidean potential functions, suitable to cope with the positivity constrained nature of the parameters to be estimated. Monte Carlo tests with synthetic data are presented to characterize the performance of the algorithm. One example with real data is included to illustrate its application.

Seasonal variation of total particulate matter and children respiratory diseases at Lisbon primary schools using passive methods

In this work, 14 primary schools of Lisbon city, Portugal, followed a questionnaire of the ISAAC - International Study of Asthma and Allergies in Childhood Program, in 2009/2010. The questionnaire contained questions to identify children with respiratory diseases (wheeze, asthma and rhinitis). Total particulate matter (TPM) was passively collected inside two classrooms of each of 14 primary schools. Two types of filter matrices were used to collect TPM: Millipore (IsoporeTM) polycarbonate and quartz. Three campaigns were selected for the measurement of TPM: Spring, Autumn and Winter. The highest difference between the two types of filters is that the mass of collected particles was higher in quartz filters than in polycarbonate filters, even if their correlation is excellent. The highest TPM depositions occurred between October 2009 and March 2010, when related with rhinitis proportion. Rhinitis was found to be related to TPM when the data were grouped seasonally and averaged for all the schools. For the data of 2006/2007, the seasonal variation was found to be related to outdoor particle deposition (below 10 μm).

Implementação da total Productive maintenance (TPM) numa empresa de produção

No âmbito do Ciclo de Estudos conducente ao grau de Mestre em Engenharia Mecânica, Per-fil de Manutenção e Produção, foi desenvolvida esta Dissertação, que consiste no estudo do estado actual de implementação da “Total Productive Maintenance – TPM” na Área de Pren-sas da Volkswagen Autoeuropa, identificando os benefícios colhidos com a referida imple-mentação, e também algumas dificuldades. No final desta Dissertação, são enunciadas as considerações resultantes do presente estudo e são emitidas algumas sugestões, no sentido de que este trabalho se torne uma mais-valia para a Área de Prensas da Volkswagen Autoeuropa, contribuindo positivamente na busca da melhoria contínua, dos zero defeitos e das zero falhas e dos zero desperdícios e, finalmente propor um plano de melhoria, ou seja, uma adaptação do actual modelo funcional face ao modelo teórico.

Abordagem da obstrução das vias aéreas superiores por pletismografia corporal total

Determinação da resistência das vias aéreas (Raw). Factores que afectam a Raw. Raw e obstrução das vias aéreas superiores (OVAS).

Determinação do azoto total num adubo (nitrato de cálcio e amónio) por termogravimetria

A acentuada diminuição da área arável per capita nas últimas décadas exige uma maior produtividade para os terrenos agrícolas. O acréscimo na produtividade é em parte conseguido pelo uso de adubos orgânicos e/ou inorgânicos. O consumo e consequente produção de adubos acompanham a tendência ditada pela necessidade de maximizar a produção agrícola. Recentes normas europeias exigem um controlo de qualidade rigoroso para os adubos em geral e em particular para os que tem um elevado teor em azoto. Para o nitrato de cálcio e amónio (NCa), essencial para a cultura de cereais, os teores em azoto nítrico e amoniacal tem de ser rigorosamente controlados dado que o nitrato de amónio pode ser usado na produção de explosivos. Na indústria o controlo de qualidade do NCa é feito por técnicas de análise volumétrica morosas e dispendiosas. Com o objectivo de seleccionar uma técnica mais expedita para o controlo de qualidade do NCa, várias amostras (sólidos granulares) comercializadas em Portugal e algumas de origem nórdica foram caracterizadas por difracção de raios x, espectroscopia do infravermelho por reflectância e termogravimetria. Todas as amostras foram previamente peneiradas de forma a obter a sua distribuição granulométrica. A difracção de raios X confirmou que as amostras eram semi-cristalinas, o que era previsível em face do processo de produção. A baixa cristalinidade não permitiu o cálculo dos parâmetros da rede cristalina que indicariam, ou não, a formação do sal duplo. A espectroscopia do infravermelho permitiu a identificação das bandas correspondentes aos dois nitratos. Os resultados da termogravimetria permitiram identificar os processos de desidratação e de decomposição dos dois nitratos. Numa só análise foi possível quantificar a água de cristalização, o azoto nítrico, o azoto amoniacal e o teor em CaO das amostras. Os resultados obtidos por termogravimetria mostraram elevada coerência com os análogos obtidos pelas técnicas clássicas de análise volumétrica. O teor em água de cristalização, obtido por TG, concorda com a estequiometria prevista para o nitrato duplo de cálcio e amónia (10 moléculas de água de hidratação). As réplicas efectuadas mostraram excelente reprodutibilidade da análise termogravimétrica das amostras de NCa. Não obstante o investimento inicial necessário, a termogravimetria afigura-se uma solução expedita para o controlo de qualidade do NCa na indústria.

Variation of magnetic properties in sedimentary rocks hosting the Foum Zguid dyke (southern Morocco): Combined effects of re-crystallization and Fe-metasomatism

The effects of dyke intrusion on the magnetic properties of host sedimentary rocks are still poorly understood. Therefore, we have evaluated bulk magnetic parameters of standard palaeomagnetic samples collected along several sections across the sediments hosting the Foum Zguid dyke in southern Morocco. The study has been completed with the evaluation of the magnetic fabric after laboratory application of sequential heating experiments. The present study shows that: (1) close to Fourn Zguid dykes, the variations of the bulk magnetic parameters and of the magnetic fabric is strongly related with re-crystallization and Fe-metasomatism intensity. (2) The thermal experiments on AMS of samples collected farther from the dyke and, thus, less affected by heating during dyke emplacement, indicate that 300-400 degrees C is the minimum experimental temperature necessary to trigger appreciable transformations of the pre-existing magnetic fabrics. For temperatures higher than ca. 580 degrees C, the magnetic fabric transformations are fully realized, with complete transposition of the initial fabric to a fabric similar to that of samples collected close to the dyke. Therefore, measured variations of the magnetic fabric can be used to evaluate re-crystallization temperatures experienced by the host sedimentary rock during dyke emplacement. The distinct magnetic behaviour observed along the cross-sections strongly suggests that samples collected farther from the dyke margins did not experience thermal episodes with temperatures higher than 300 degrees C after dyke emplacement. (3) AMS data shows a gradual variation of the magnetic fabric with distance from the dyke margin, from sub-horizontal K-3 away from the dyke to vertical K3 close to the dyke. Experimental heating shows that heat alone can be responsible for this strong variation. Therefore, such orientation changes should not be unequivocally interpreted as the result of a stress field (resulting from the emplacement of the dyke, for instance). (4) Magnetic studies prove to be a very sensitive tool to assess rock magnetic transformations, thermally and chemically induced by dyke intrusion in hosting sediments.

Caracterização de regiões encefálicas no cérebro normal por tensor de difusão e aplicação à epilepsia pós-traumática

Mestrado em Radiações Aplicadas às Tecnologias da Saúde.

Leanness e manutenção produtiva total (TPM): modelo de produtividade e competitividade: estudo de caso

O presente trabalho tem como objectivo apresentar a filosofia lean, qual a sua origem e evolução, bem como, os princípios em que se baseia. Na revisão bibliográfica efectuada, são identificadas e caracterizadas as mais importantes ferramentas desta filosofia, nomeadamente o kaizen, VSM, 5“S”, TPM, controlo visual e takt time numa linha móvel, evidenciando para cada uma, qual a sua mais valia no processo de melhoria. A metodologia utilizada neste trabalho é o estudo de caso, visto ser a mais adequada para a questão relevante de investigação identificada. A empresa onde é efectuado o estudo de caso opera no mercado de manutenção aeronáutica, sendo a investigação centrada no processo de reparação de motores aeronáuticos. Com maior detalhe apresentam-se as actividades de manutenção após conclusão da avaliação do motor, sendo de destacar a implementação de fluxo, controlo visual, trabalho padrão e de uma linha de montagem a velocidade constante para efectuar as tarefas de montagem final. A utilização desta última ferramenta lean, a maioria das vezes associada a processos de fabricação, é inovadora, visto nenhuma outra empresa deste segmento de mercado usar esta abordagem num processo de manutenção de motores aeronáuticos. Os resultados obtidos no estudo de caso confirmam a melhoria da eficiência global da empresa, bem como, a adequação desta filosofia de gestão à manutenção de motores aeronáuticos. Conseguiu-se evidenciar que a empresa, ao aplicar a metodologia lean, entrega aos seus clientes produtos com qualidade e na data acordada, mantendo a sua competitividade no mercado e incrementando a produtividade. O envolvimento, criatividade e comprometimento de todos os colaboradores da empresa na implementação destas ferramentas lean são factores críticos no sucesso deste processo de melhoria contínua.

Role of malnutrition and parasite infections in the spatial variation in children’s anaemia risk in Northern Angola

Anaemia has a significant impact on child development and mortality and is a severe public health problem in most countries in sub-Saharan Africa. Nutritional and infectious causes of anaemia are geographically variable and anaemia maps based on information on the major aetiologies of anaemia are important for identifying communities most in need and the relative contribution of major causes. We investigated the consistency between ecological and individual-level approaches to anaemia mapping, by building spatial anaemia models for children aged ≤15 years using different modeling approaches. We aimed to a) quantify the role of malnutrition, malaria, Schistosoma haematobium and soil-transmitted helminths (STH) for anaemia endemicity in children aged ≤15 years and b) develop a high resolution predictive risk map of anaemia for the municipality of Dande in Northern Angola. We used parasitological survey data on children aged ≤15 years to build Bayesian geostatistical models of malaria (PfPR≤15), S. haematobium, Ascaris lumbricoides and Trichuris trichiura and predict small-scale spatial variation in these infections. The predictions and their associated uncertainty were used as inputs for a model of anemia prevalence to predict small-scale spatial variation of anaemia. Stunting, PfPR≤15, and S. haematobium infections were significantly associated with anaemia risk. An estimated 12.5%, 15.6%, and 9.8%, of anaemia cases could be averted by treating malnutrition, malaria, S. haematobium, respectively. Spatial clusters of high risk of anaemia (>86%) were identified. Using an individual-level approach to anaemia mapping at a small spatial scale, we found that anaemia in children aged ≤15 years is highly heterogeneous and that malnutrition and parasitic infections are important contributors to the spatial variation in anemia risk. The results presented in this study can help inform the integration of the current provincial malaria control program with ancillary micronutrient supplementation and control of neglected tropical diseases, such as urogenital schistosomiasis and STH infection.

Role of malnutrition and parasite infections in the spatial variation in children’s anaemia risk in northern Angola

Anaemia is known to have an impact on child development and mortality and is a severe public health problem in most countries in sub-Saharan Africa. We investigated the consistency between ecological and individual-level approaches to anaemia mapping by building spatial anaemia models for children aged ≤15 years using different modelling approaches. We aimed to (i) quantify the role of malnutrition, malaria, Schistosoma haematobium and soil-transmitted helminths (STHs) in anaemia endemicity; and (ii) develop a high resolution predictive risk map of anaemia for the municipality of Dande in northern Angola. We used parasitological survey data for children aged ≤15 years to build Bayesian geostatistical models of malaria (PfPR≤15), S. haematobium, Ascaris lumbricoides and Trichuris trichiura and predict small-scale spatial variations in these infections. Malnutrition, PfPR≤15, and S. haematobium infections were significantly associated with anaemia risk. An estimated 12.5%, 15.6% and 9.8% of anaemia cases could be averted by treating malnutrition, malaria and S. haematobium, respectively. Spatial clusters of high risk of anaemia (>86%) were identified. Using an individual-level approach to anaemia mapping at a small spatial scale, we found that anaemia in children aged ≤15 years is highly heterogeneous and that malnutrition and parasitic infections are important contributors to the spatial variation in anaemia risk. The results presented in this study can help inform the integration of the current provincial malaria control programme with ancillary micronutrient supplementation and control of neglected tropical diseases such as urogenital schistosomiasis and STH infections.

Factors related with adiponectinemia in obese and normal-weight women and with its variation in weight loss programs

Objective: To assess different factors influencing adiponectinemia in obese and normal-weight women; to identify factors associated with the variation (Δ) in adiponectinemia in obese women following a 6-month weight loss program, according to surgical/non-surgical interventions. Methods: We studied 100 normal-weight women and 112 obese premenopausal women; none of them was on any medical treatment. Women were characterized for anthropometrics, daily macronutrient intake, smoking status, contraceptives use, adiponectin as well as IL-6 and TNF-α serum concentrations. Results: Adiponectinemia was lower in obese women (p < 0.001), revealing an inverse association with waist-to-hip ratio (p < 0.001; r = –0.335). Normal-weight women presented lower adiponectinemia among smokers (p = 0.041); body fat, waist-to-hip ratio, TNF-α levels, carbohydrate intake, and smoking all influence adiponectinemia (r 2 = 0.436). After weight loss interventions, a significant modification in macronutrient intake occurs followed by anthropometrics decrease (chiefly after bariatric procedures) and adiponectinemia increase (similar after surgical and non-surgical interventions). After bariatric intervention, Δ adiponectinemia was inversely correlated to Δ waist circumference and Δ carbohydrate intake (r 2 = 0.706). Conclusion: Anthropometrics, diet, smoking, and TNF-α levels all influence adiponectinemia in normal-weight women, although explaining less than 50% of it. In obese women, anthropometrics modestly explain adiponectinemia. Opposite to non-surgical interventions, after bariatric surgery adiponectinemia increase is largely explained by diet composition and anthropometric changes.

Comparação do cálculo de dose com os algoritmos Analytical Anisotropic Algorithm e Pencil Beam Convolution na patologia de pulmão

Mestrado em Radioterapia.

Re-evaluation of a reported increased micronucleus frequency in lymphocytes of workers occupationally exposed to formaldehyde

A replicate evaluation of increased micronucleus (MN) frequencies in peripheral lymphocytes of workers occupationally exposed to formaldehyde (FA) was undertaken to verify the observed effect and to determine scoring variability. May–Grünwald–Giemsa-stained slides were obtained from a previously performed cytokinesis-block micronucleus test (CBMNT) with 56 workers in anatomy and pathology laboratories and 85 controls. The first evaluation by one scorer (scorer 1) had led to a highly significant difference between workers and controls (3.96 vs 0.81 MN per 1000 cells). The slides were coded before re-evaluation and the code was broken after the complete re-evaluation of the study. A total of 1000 binucleated cells (BNC) were analysed per subject and the frequency of MN (in ‰) was determined. Slides were distributed equally and randomly between two scorers, so that the scorers had no knowledge of the exposure status. Scorer 2 (32 exposed, 36 controls) measured increased MN frequencies in exposed workers (9.88 vs 6.81). Statistical analysis with the two-sample Wilcoxon test indicated that this difference was not significant (p = 0.17). Scorer 3 (20 exposed, 46 controls) obtained a similar result, but slightly higher values for the comparison of exposed and controls (19.0 vs 12.89; p = 0.089). Combining the results of the two scorers (13.38 vs 10.22), a significant difference between exposed and controls (p = 0.028) was obtained when the stratified Wilcoxon test with the scorers as strata was applied. Interestingly, the re-evaluation of the slides led to clearly higher MN frequencies for exposed and controls compared with the first evaluation. Bland–Altman plots indicated that the agreement between the measurements of the different scorers was very poor, as shown by mean differences of 5.9 between scorer 1 and scorer 2 and 13.0 between scorer 1 and scorer 3. Calculation of the intra-class correlation coefficient (ICC) revealed that all scorer comparisons in this study were far from acceptable for the reliability of this assay. Possible implications for the use of the CBMNT in human biomonitoring studies are discussed.

O uso de palmilhas de contato total e o impacte nas alterações posturais no trabalho em ortostatismo

Mestrado em Higiene e Segurança no Trabalho