Ecoregion classification using a bayesian approach and centre-focused clusters

Ecological regions are increasingly used as a spatial unit for planning and environmental management. It is important to define these regions in a scientifically defensible way to justify any decisions made on the basis that they are representative of broad environmental assets. The paper describes a methodology and tool to identify cohesive bioregions. The methodology applies an elicitation process to obtain geographical descriptions for bioregions, each of these is transformed into a Normal density estimate on environmental variables within that region. This prior information is balanced with data classification of environmental datasets using a Bayesian statistical modelling approach to objectively map ecological regions. The method is called model-based clustering as it fits a Normal mixture model to the clusters associated with regions, and it addresses issues of uncertainty in environmental datasets due to overlapping clusters.

On a resampling approach for tests on the number of clusters with mixture model-based clustering of tissue samples

We consider the problem of assessing the number of clusters in a limited number of tissue samples containing gene expressions for possibly several thousands of genes. It is proposed to use a normal mixture model-based approach to the clustering of the tissue samples. One advantage of this approach is that the question on the number of clusters in the data can be formulated in terms of a test on the smallest number of components in the mixture model compatible with the data. This test can be carried out on the basis of the likelihood ratio test statistic, using resampling to assess its null distribution. The effectiveness of this approach is demonstrated on simulated data and on some microarray datasets, as considered previously in the bioinformatics literature. (C) 2004 Elsevier Inc. All rights reserved.

Effectiveness of document representation for classification

Conventionally, document classification researches focus on improving the learning capabilities of classifiers. Nevertheless, according to our observation, the effectiveness of classification is limited by the suitability of document representation. Intuitively, the more features that are used in representation, the more comprehensive that documents are represented. However, if a representation contains too many irrelevant features, the classifier would suffer from not only the curse of high dimensionality, but also overfitting. To address this problem of suitableness of document representations, we present a classifier-independent approach to measure the effectiveness of document representations. Our approach utilises a labelled document corpus to estimate the distribution of documents in the feature space. By looking through documents in this way, we can clearly identify the contributions made by different features toward the document classification. Some experiments have been performed to show how the effectiveness is evaluated. Our approach can be used as a tool to assist feature selection, dimensionality reduction and document classification.

A classification of concurrency failures in java components

The Java programming language supports concurrency. Concurrent programs are hard to test due to their inherent non-determinism. This paper presents a classification of concurrency failures that is based on a model of Java concurrency. The model and failure classification is used to justify coverage of synchronization primitives of concurrent components. This is achieved by constructing concurrency flow graphs for each method call. A producer-consumer monitor is used to demonstrate how the approach can be used to measure coverage of concurrency primitives and thereby assist in determining test sequences for deterministic execution.