Genome-wide analysis of mammalian promoter architecture and evolution

Mammalian promoters can be separated into two classes, conserved TATA box-enriched promoters, which initiate at a welldefined site, and more plastic, broad and evolvable CpG-rich promoters. We have sequenced tags corresponding to several hundred thousand transcription start sites (TSSs) in the mouse and human genomes, allowing precise analysis of the sequence architecture and evolution of distinct promoter classes. Different tissues and families of genes differentially use distinct types of promoters. Our tagging methods allow quantitative analysis of promoter usage in different tissues and show that differentially regulated alternative TSSs are a common feature in protein-coding genes and commonly generate alternative N termini. Among the TSSs, we identified new start sites associated with the majority of exons and with 3' UTRs. These data permit genome-scale identification of tissue-specific promoters and analysis of the cis-acting elements associated with them.

Niveo-eolian Sediment Deposits in Coastal South Victoria Land, Antarctica: Indicators of Regional Variability in Weather and Climate

A 35 year chronology from 1965 to 2000 of the deposition of wind-blown sediment is constructed from snowpits for coastal southern Victoria Land, Antarctica. Analysis of local meteorology, contemporary eolian sedimentation, and mineralogy confirm a Victoria Valley provenance, while the presence of volcanic tephra is ascribed to an Erebus volcanic province source. Winter foelm winds associated with anticyclonic circulation are considered responsible for transporting fine-grained sediment from the snow- and ice-free Victoria Valley east toward the coast, while cyclonic storms transport tephra north along the Scott Coast. No trend could be identified in the occurrence of either tephra or wind-blown sediments sourced from the Victoria Valley and retrieved from the snowpits; excavated on the Victoria Lower and Wilson Piedmont Glaciers. We infer this to indicate that the region has not undergone a significant change in weather patterns for at least the last 35 years. Our results also confirm the McMurdo Dry Valleys as a regionally significant source of wind-blown sediment.