Design and optimization next generation passive all-optical networks

Este trabalho investiga novas metodologias para as redes óticas de acesso de próxima geração (NG-OAN). O trabalho está dividido em quatro tópicos de investigação: projeto da rede, modelos numéricos para efeitos não lineares da fibra ótica, impacto dos efeitos não lineares da fibra ótica e otimização da rede. A rede ótica de acesso investigada nesse trabalho está projetado para suprir os requisitos de densidade de utilizadores e cobertura, isto é, suportar muitos utilizadores ( 1000) com altas velocidades de conexão dedicada ( 1 Gb/s) ocupando uma faixa estreita do espectro ( 25 nm) e comprimentos de fibra ótica até 100 km. Os cenários são baseados em redes óticas passivas com multiplexagem por divisão no comprimento de onda de alta densidade (UDWDM-PON) utilizando transmissores/receptores coerentes nos terminais da rede. A rede é avaliada para vários ritmos de transmissão usando formatos de modulação avançados, requisitos de largura de banda por utilizador e partilha de banda com tecnologias tradicionais de redes óticas passivas (PON). Modelos numéricos baseados em funções de transferência das séries de Volterra (VSTF) são demonstrados tanto para a análise dos efeitos não lineares da fibra ótica quanto para avaliação do desempenho total da rede. São apresentadas as faixas de potência e distância de transmissão nas quais as séries de Volterra apresentam resultados semelhantes ao modelo referência Split-Step Fourier (SSF) (validado experimentalmente) para o desempenho total da rede. Além disso, um algoritmo, que evita componentes espectrais com intensidade nulo, é proposto para realizar cálculos rápidos das séries. O modelo VSTF é estendido para identificar unicamente os efeitos não lineares da fibra ótica mais relevantes no cenário investigado: Self-Phase Modulation (SPM), Cross-Phase Modulation (XPM) e Four-Wave Mixing (FWM). Simulações numéricas são apresentadas para identificar o impacto isolado de cada efeito não linear da fibra ótica, SPM, XPM e FWM, no desempenho da rede com detecção coerente UDWDM-PON, transportando canais com modulação digital em fase (M-ária PSK) ou modulação digital em amplitude (M-ária QAM). A análise numérica é estendida para diferentes comprimentos de fibra ótica mono modo (SSMF), potência por canal e ritmo de transmissão por canal. Por conseguinte, expressões analíticas são extrapoladas para determinar a evolução do SPM, XPM e FWM em função da potência e distância de transmissão em cenários NG-OAN. O desempenho da rede é otimizada através da minimização parcial da interferência FWM (via espaçamento desigual dos canais), que nesse caso, é o efeito não linear da fibra ótica mais relevante. Direções para melhorias adicionas no desempenho da rede são apresentados para cenários em que o XPM é relevante, isto é, redes transportando formatos de modulação QAM. A solução, nesse caso, é baseada na utilização de técnicas de processamento digital do sinal.

Saccharomycotin transcriptomics by next-generation sequencing

The non-standard decoding of the CUG codon in Candida cylindracea raises a number of questions about the evolutionary process of this organism and other species Candida clade for which the codon is ambiguous. In order to find some answers we studied the transcriptome of C. cylindracea, comparing its behavior with that of Saccharomyces cerevisiae (standard decoder) and Candida albicans (ambiguous decoder). The transcriptome characterization was performed using RNA-seq. This approach has several advantages over microarrays and its application is booming. TopHat and Cufflinks were the software used to build the protocol that allowed for gene quantification. About 95% of the reads were mapped on the genome. 3693 genes were analyzed, of which 1338 had a non-standard start codon (TTG/CTG) and the percentage of expressed genes was 99.4%. Most genes have intermediate levels of expression, some have little or no expression and a minority is highly expressed. The distribution profile of the CUG between the three species is different, but it can be significantly associated to gene expression levels: genes with fewer CUGs are the most highly expressed. However, CUG content is not related to the conservation level: more and less conserved genes have, on average, an equal number of CUGs. The most conserved genes are the most expressed. The lipase genes corroborate the results obtained for most genes of C. cylindracea since they are very rich in CUGs and nothing conserved. The reduced amount of CUG codons that was observed in highly expressed genes may be due, possibly, to an insufficient number of tRNA genes to cope with more CUGs without compromising translational efficiency. From the enrichment analysis, it was confirmed that the most conserved genes are associated with basic functions such as translation, pathogenesis and metabolism. From this set, genes with more or less CUGs seem to have different functions. The key issues on the evolutionary phenomenon remain unclear. However, the results are consistent with previous observations and shows a variety of conclusions that in future analyzes should be taken into consideration, since it was the first time that such a study was conducted.

Distribuição de conteúdos em redes veiculares usando mecanismos de comunicação tolerantes ao atraso

The last couple of decades have been the stage for the introduction of new telecommunication networks. It is expected that in the future all types of vehicles, such as cars, buses and trucks have the ability to intercommunicate and form a vehicular network. Vehicular networks display particularities when compared to other networks due to their continuous node mobility and their wide geographical dispersion, leading to a permanent network fragmentation. Therefore, the main challenges that this type of network entails relate to the intermittent connectivity and the long and variable delay in information delivery. To address the problems related to the intermittent connectivity, a new concept was introduced – Delay Tolerant Network (DTN). This architecture is built on a Store-Carry-and-Forward (SCF) mechanism in order to assure the delivery of information when there is no end-to-end path defined. Vehicular networks support a multiplicity of services, including the transportation of non-urgent information. Therefore, it is possible to conclude that the use of a DTN for the dissemination of non-urgent information is able to surpass the aforementioned challenges. The work developed focused on the use of DTNs for the dissemination of non-urgent information. This information is originated in the network service provider and should be available on mobile network terminals during a limited period of time. In order to do so, four different strategies were deployed: Random, Least Number of Hops First (LNHF), Local Rarest Bundle First (LRBF) e Local Rarest Generation First (LRGF). All of these strategies have a common goal: to disseminate content into the network in the shortest period of time and minimizing network congestion. This work also contemplates the analysis and implementation of techniques that reduce network congestion. The design, implementation and validation of the proposed strategies was divided into three stages. The first stage focused on creating a Matlab emulator for the fast implementation and strategy validation. This stage resulted in the four strategies that were afterwards implemented in the DTNs software Helix – developed in a partnership between Instituto de Telecomunicac¸˜oes (IT) and Veniam R , which are responsible for the largest operating vehicular network worldwide that is located in Oporto city. The strategies were later evaluated on an emulator that was built for the largescale testing of DTN. Both emulators account for vehicular mobility based on information previously collected from the real platform. Finally, the strategy that presented the best overall performance was tested on a real platform – in a lab environment – for concept and operability demonstration. It is possible to conclude that two of the implemented strategies (LRBF and LRGF) can be deployed in the real network and guarantee a significant delivery rate. The LRBF strategy has the best performance in terms of delivery. However, it needs to add a significant overhead to the network in order to work. In the future, tests of scalability should be conducted in a real environment in order to confirm the emulator results. The real implementation of the strategies should be accompanied by the introduction of new types of services for content distribution.