Variations in GDGT distributions through the water column in the South East Atlantic Ocean

The TetraEther indeX of 86 carbon atoms (TEX86) temperature proxy is widely used in reconstructions of past sea surface temperature. Most current calibrations are based on surface sediment distributions of the glycerol dialkyl glycerol tetraether lipids (GDGTs) that comprise TEX86 and assume that these GDGTs are exported from the upper mixed layer. However, GDGT export from deeper waters could impact sedimentary GDGT distributions and therefore TEX86 paleothermometry. Here we examine GDGT distributions in suspended particulate matter (SPM) and underlying sediments collected from the Southeast Atlantic Ocean. Our results reveal different GDGT distributions - specifically the ratio between GDGTs bearing 2 vs. 3 cyclopentyl moieties, [2/3] ratios - between surface, subsurface (>50-200 m) and deep water (>200 m) SPM, which suggests the occurrence of in situ (deep) production that is not apparent when considering TEX86. The GDGT distributions in sediments match those of subsurface waters rather than surface waters, suggesting that they have not been preferentially derived from the upper mixed layer; this is consistent with GDGT abundances being highest in shallow subsurface SPM (˜100 to 200 m). It remains unclear what governs the different [2/3] ratios throughout the water column, but it is likely related to a combination of temperature and thaumarchaeotal community structure.

Abundance of phytoplankton, heterotrophic nanoflagellates and bacteria through the water column at time series station L4 in the Western English Channel, 2007-2013

short doi:10/rf8 full doi:10.5285/f014becf-d6d6-3bb9-e044-000b5de50f38

Single-cell enabled comparative genomics of a deep ocean SAR11 bathytype

Bacterioplankton of the SAR11 clade are the most abundant microorganisms in marine systems, usually representing 25% or more of the total bacterial cells in seawater worldwide. SAR11 is divided into subclades with distinct spatiotemporal distributions (ecotypes), some of which appear to be specific to deep water. Here we examine the genomic basis for deep ocean distribution of one SAR11 bathytype (depth-specific ecotype), subclade Ic. Four single-cell Ic genomes, with estimated completeness of 55%-86%, were isolated from 770 m at station ALOHA and compared with eight SAR11 surface genomes and metagenomic datasets. Subclade Ic genomes dominated metagenomic fragment recruitment below the euphotic zone. They had similar COG distributions, high local synteny and shared a large number (69%) of orthologous clusters with SAR11 surface genomes, yet were distinct at the 16S rRNA gene and amino-acid level, and formed a separate, monophyletic group in phylogenetic trees. Subclade Ic genomes were enriched in genes associated with membrane/cell wall/envelope biosynthesis and showed evidence of unique phage defenses. The majority of subclade Ic-specfic genes were hypothetical, and some were highly abundant in deep ocean metagenomic data, potentially masking mechanisms for niche differentiation. However, the evidence suggests these organisms have a similar metabolism to their surface counterparts, and that subclade Ic adaptations to the deep ocean do not involve large variations in gene content, but rather more subtle differences previously observed deep ocean genomic data, like preferential amino-acid substitutions, larger coding regions among SAR11 clade orthologs, larger intergenic regions and larger estimated average genome size.

Lipid productivity and cell wall ultrastructure of six strains of Nannochloropsis: Implications for biofuel production and downstream processing

Microalgae are generating considerable interest for third generation biodiesel production. However, appropriate strain selection is proving challenging due to the significant variation in cellular physiology, metabolic potential and genetics observed even amongst strains deemed morphologically similar. Six strains of Nannochloropsis from the CCAP culture collection were assessed for their lipid productivity and cellular structure, as proxies for oil production and harvesting ease, to assess their suitability as biodiesel production platforms. Differences in growth rate and lipid accumulation across the strains were observed. Nannochloropsis oculata strain 849/7 showed significantly reduced doubling time compared to Nannochloropsis salina strain 849/3, whilst Nannochloropsis oceanica 849/10 produced the highest lipid content. In addition the six strains could be differentiated into 3 distinct classes based on their cell wall thickness, which varied across the strains from 63 to 119 nm and which is independent of both species and geographical isolation location. The importance of these variations in ultrastructure and physiology for biodiesel production is discussed.