Validation of the detection of Pseudo-nitzschia spp. using specific RNA probes tested in a microarray format: Calibration of signal based on variability of RNA content with environmental conditions.

Harmful algal blooms (HAB) occur worldwide and cause health problems and economic damage to fisheries and tourism. Monitoring for toxic algae is therefore essential but is based primarily on light microscopy, which is time consuming and can be limited by insufficient morphological characters such that more time is needed to examine critical features with electron microscopy. Monitoring with molecular tools is done in only a few places world-wide. EU FP7 MIDTAL (Microarray Detection of Toxic Algae) used SSU and LSU rRNA genes as targets on microarrays to identify toxic species. In order to comply with current monitoring requirements to report cell numbers as the relevant threshold measurement to trigger closure of fisheries, it was necessary to calibrate our microarray to convert the hybridisation signal obtained to cell numbers. Calibration curves for two species of Pseudo-nitzschia for use with the MIDTAL microarray are presented to obtain cell numbers following hybridisation. It complements work presented by Barra et al. (2012b. Environ. Sci. Pollut. Res. doi: 10.1007/s11356-012-1330-1v) for two other Pseudo-nitzschia spp., Dittami and Edvardsen (2012a. J. Phycol. 48, 1050) for Pseudochatonella, Blanco et al. (2013. Harmful Algae 24, 80) for Heterosigma, McCoy et al. (2013. FEMS. doi: 10.1111/1574-6941.12277) for Prymnesium spp., Karlodinium veneficum, and cf. Chatonella spp. and Taylor et al. (2014. Harmful Algae, in press) for Alexandrium.

The role of advection in the distribution of plankton populations at a moored 1-D coastal observatory

The degree to which advection modulates the distribution of plankton populations at a 1-D coastal observatory was assessed at station L4 in the western English Channel (50°15′N 4°13′W, depth 50 m), part of the Western Channel Observatory (WCO). Five tidal-cycle surveys were conducted, three in spring and two in summer 2010. Observations of the physical characteristics of L4 were obtained by using a moored acoustic doppler current profiler (ADCP) and a free-falling microstructure sensor (MSS). The moored ADCP highlighted the presence of vertical shear, with typical values of U during spring tides of ∼0.5 m s−1 at the surface and ∼0.2 m s−1 at the bed. The distribution of phyto- and zooplankton populations above a size threshold of 200 μm were examined using an in-line holographic imaging system, the Holocam. Variability in time as well as depth is a common feature throughout each of the surveys, with examples of recorded numbers of phytoplankton that ranged between 1300 L−1 and 2300 L−1 at the same depth but at different points within the tidal cycle. Further, at the same points in the tidal cycle the number of recorded zooplankton was also seen to vary, specifically with the identification of gelatinous planula in spring that increased the observed number to maximums of between 140 L−1 and 220 L−1 in the upper layer, considerably higher that the corresponding WP-2 net counts for a similar period. Specific aspects of the movement and transfer of plankton relating to advection and interaction with the pycnocline are identified, both across tidal cycles and seasons.