Mighty small: Observing and modeling individual microbes becomes big science

Progress in microbiology has always been driven by technological advances, ever since Antonie van Leeuwenhoek discovered bacteria by making an improved compound microscope. However, until very recently we have not been able to identify microbes and record their mostly invisible activities, such as nutrient consumption or toxin production on the level of the single cell, not even in the laboratory. This is now changing with the rapid rise of exciting new technologies for single-cell microbiology (1, 2), which enable microbiologists to do what plant and animal ecologists have been doing for a long time: observe who does what, when, where, and next to whom. Single cells taken from the environment can be identified and even their genomes sequenced. Ex situ, their size, elemental, and biochemical composition, as well as other characteristics can be measured with high-throughput and cells sorted accordingly. Even better, individual microbes can be observed in situ with a range of novel microscopic and spectroscopic methods, enabling localization, identification, or functional characterization of cells in a natural sample, combined with detecting uptake of labeled compounds. Alternatively, they can be placed into fabricated microfluidic environments, where they can be positioned, exposed to stimuli, monitored, and their interactions controlled “in microfluido.” By introducing genetically engineered reporter cells into a fabricated landscape or a microcosm taken from nature, their reproductive success or activity can be followed, or their sensing of their local environment recorded.

Effects Of Temperature And Salinity On Oxygen-Consumption And Nitrogen-Excretion In Thais (Nucella) Lapillus (L)

The 2-wk TLm of stepwise-acclimated Thais lapillus (L.) (>20 mm long) was 14.2–16.2%. salinity (S) at 5, 10, 15, and 20°C. The same TLm occurred at 10 °C after direct transfer of snails to the final salinity but stepwise-acclimated small snails (<20 mm) tolerated a significantly lower salinity (12.7%. S). Oxygen consumption rates () fit the allometric equation . Salinity and temperature had a significant effect on , which was highest at 30%. S and depressed at 17.5%. S and at 5°C. Ammonia excretion rates fit the allometric equation . Both salinity and temperature affected . Ammonia excretion was significantly lower at 17.5 %. S than at higher salinities at 10, 15, and 20°C, but did not vary as a function of salinity at 5°C. Primary amines were lost from snails under all conditions without any obvious relationship with temperature or salinity. Primary-amine loss, expressed as a percentage of , was significantly higher at 17.5 %. S than at higher salinities. Oxygen : nitrogen ratios ranged from 4.2–15.6, indicating protein was the primary metabolic substrate, and were highest at 15 °C and lowest at 5 °C. Snails withstood 89 days starvation without mortality at 10°C. Oxygen consumption of snails declined by 28% during starvation due to a 37% decline in dry weight; consequently, weight-specific respiration rate increased by 17%. The intercept (a) for the allometric equations did not change during starvation. Ammonia excretion increased during starvation, and primary-amine loss increased until Day 21, then declined. Oxygen: nitrogen ratios declined from 14 to 8, indicating an increased catabolism of protein during starvation.

Nutrient Distributions In An Estuary - Evidence Of Chemical Precipitation Of Dissolved Silicate And Phosphate

Continuous autoanalytical recordings of the axial distributions of dissolved nitrate, silicate and phosphate in the influent freshwater and saline waters of the Tamar Estuary, south-west England have been obtained. Short-term variability in the distributions was assessed by repetitive profiling at approximately 3-h intervals on a single day and seasonal comparisons were obtained from ten surveys carried out between June 1977 and August 1978. Whereas nitrate is always essentially conserved throughout the upper estuary, the silicate- and phosphate-salinity relationships consistently indicate a non-biological removal of these nutrients within the low (0–10%) salinity range. Attempts to quantify precisely the degree of removal and to correlate this with changes in environmental properties (pH, turbidity, chlorophyll fluorescence, salinity, freshwater composition) were mainly inconclusive due to short-term fluctuations in the riverine concentrations of silicate and phosphate advected into the reactive region and to the rapid changes in turbidity brought about by tidally-induced resuspension and deposition of bottom sediment.

Responses Of Mytilus-Edulis L To Low Oxygen-Tension - Acclimation Of Rate Of Oxygen-Consumption

1. Mytilus edulis acclimated its rates of oxygen consumption when maintained at reduced oxygen tensions for periods in excess of five days. 2. Acclimation was complete down to approximately 55 mm Hg PO2 at slightly lower oxygen tensions (51, 49 and 43 mm Hg) acclimation was complete in one experiment and partial in two others. 3. The capacity to acclimate oxygen consumption was not affected by a reduction in ration nor by an increase in temperature (10 to 22 °C). 4. Mussels that were acclimated to reduced oxygen tension (40–80 mm Hg), and then exposed to P O 2 of less than 20 mm Hg for two or five hours, had depressed rates of oxygen uptake when subsequently “recovered” to 40–80 mm Hg. 5. These results are discussed in the context of biochemical studies of anaerobic metabolism in mussels from the same experiments.