Integration of spatial and temporal models to predict extreme water table depths

The objective of this work was to evaluate extreme water table depths in a watershed, using methods for geographical spatial data analysis. Groundwater spatio-temporal dynamics was evaluated in an outcrop of the Guarani Aquifer System. Water table depths were estimated from monitoring of water levels in 23 piezometers and time series modeling available from April 2004 to April 2011. For generation of spatial scenarios, geostatistical techniques were used, which incorporated into the prediction ancillary information related to the geomorphological patterns of the watershed, using a digital elevation model. This procedure improved estimates, due to the high correlation between water levels and elevation, and aggregated physical sense to predictions. The scenarios showed differences regarding the extreme levels - too deep or too shallow ones - and can subsidize water planning, efficient water use, and sustainable water management in the watershed.

Error Autocorrelation and Linear Regression for Temperature-Based Evapotranspiration Estimates Improvement

Estimates of evapotranspiration on a local scale is important information for agricultural and hydrological practices. However, equations to estimate potential evapotranspiration based only on temperature data, which are simple to use, are usually less trustworthy than the Food and Agriculture Organization (FAO)Penman-Monteith standard method. The present work describes two correction procedures for potential evapotranspiration estimates by temperature, making the results more reliable. Initially, the standard FAO-Penman-Monteith method was evaluated with a complete climatologic data set for the period between 2002 and 2006. Then temperature-based estimates by Camargo and Jensen-Haise methods have been adjusted by error autocorrelation evaluated in biweekly and monthly periods. In a second adjustment, simple linear regression was applied. The adjusted equations have been validated with climatic data available for the Year 2001. Both proposed methodologies showed good agreement with the standard method indicating that the methodology can be used for local potential evapotranspiration estimates.

Pilot survey of expressed sequence tags (ESTs) from the asexual blood stages of Plasmodium vivax in human patients

Abstract Background Plasmodium vivax is the most widely distributed human malaria, responsible for 70–80 million clinical cases each year and large socio-economical burdens for countries such as Brazil where it is the most prevalent species. Unfortunately, due to the impossibility of growing this parasite in continuous in vitro culture, research on P. vivax remains largely neglected. Methods A pilot survey of expressed sequence tags (ESTs) from the asexual blood stages of P. vivax was performed. To do so, 1,184 clones from a cDNA library constructed with parasites obtained from 10 different human patients in the Brazilian Amazon were sequenced. Sequences were automatedly processed to remove contaminants and low quality reads. A total of 806 sequences with an average length of 586 bp met such criteria and their clustering revealed 666 distinct events. The consensus sequence of each cluster and the unique sequences of the singlets were used in similarity searches against different databases that included P. vivax, Plasmodium falciparum, Plasmodium yoelii, Plasmodium knowlesi, Apicomplexa and the GenBank non-redundant database. An E-value of <10-30 was used to define a significant database match. ESTs were manually assigned a gene ontology (GO) terminology Results A total of 769 ESTs could be assigned a putative identity based upon sequence similarity to known proteins in GenBank. Moreover, 292 ESTs were annotated and a GO terminology was assigned to 164 of them. Conclusion These are the first ESTs reported for P. vivax and, as such, they represent a valuable resource to assist in the annotation of the P. vivax genome currently being sequenced. Moreover, since the GC-content of the P. vivax genome is strikingly different from that of P. falciparum, these ESTs will help in the validation of gene predictions for P. vivax and to create a gene index of this malaria parasite.

Prevalence and risk factors of Hepatitis C virus infection in Brazil, 2005 through 2009: a cross-sectional study

Abstract Background Hepatitis C chronic liver disease is a major cause of liver transplant in developed countries. This article reports the first nationwide population-based survey conducted to estimate the seroprevalence of HCV antibodies and associated risk factors in the urban population of Brazil. Methods The cross sectional study was conducted in all Brazilian macro-regions from 2005 to 2009, as a stratified multistage cluster sample of 19,503 inhabitants aged between 10 and 69 years, representing individuals living in all 26 State capitals and the Federal District. Hepatitis C antibodies were detected by a third-generation enzyme immunoassay. Seropositive individuals were retested by Polymerase Chain Reaction and genotyped. Adjusted prevalence was estimated by macro-regions. Potential risk factors associated with HCV infection were assessed by calculating the crude and adjusted odds ratios, 95% confidence intervals (95% CI) and p values. Population attributable risk was estimated for multiple factors using a case–control approach. Results The overall weighted prevalence of hepatitis C antibodies was 1.38% (95% CI: 1.12%–1.64%). Prevalence of infection increased in older groups but was similar for both sexes. The multivariate model showed the following to be predictors of HCV infection: age, injected drug use (OR = 6.65), sniffed drug use (OR = 2.59), hospitalization (OR = 1.90), groups socially deprived by the lack of sewage disposal (OR = 2.53), and injection with glass syringe (OR = 1.52, with a borderline p value). The genotypes 1 (subtypes 1a, 1b), 2b and 3a were identified. The estimated population attributable risk for the ensemble of risk factors was 40%. Approximately 1.3 million individuals would be expected to be anti-HCV-positive in the country. Conclusions The large estimated absolute numbers of infected individuals reveals the burden of the disease in the near future, giving rise to costs for the health care system and society at large. The known risk factors explain less than 50% of the infected cases, limiting the prevention strategies. Our findings regarding risk behaviors associated with HCV infection showed that there is still room for improving strategies for reducing transmission among drug users and nosocomial infection, as well as a need for specific prevention and control strategies targeting individuals living in poverty.

Avaliação dos Níveis de Metais, Arsênio e Fósforo em Sedimentos Superficiais Marinhos do Arquipélago dos Alcatrazes (São Sebastião – SP) e das Ilhas das Cabras e Palmas (Ubatuba – SP)

Avaliação dos Níveis de Metais, Arsênio e Fósforo em Sedimentos Superficiais Marinhos do Arquipélago dos Alcatrazes (São Sebastião – SP) e das Ilhas das Cabras e Palmas (Ubatuba – SP) Natasha TraveniskHoffa*, Rubens César Lopes Figueiraa, Denis M. S. Abessab aInstituto Oceanográfico, Universidade de São Paulo, Praça do Oceanográfico - 191, São Paulo - SP, Brasil bUniversidade Estadual Paulista – Campus Experimental Litoral Paulista, Praça Infante Dom Henrique - s/nº, São Vicente – SP, Brasil *e-mail da autora: tashahoff@gmail.com A obtenção dos valores naturais de metais traço nos sedimentos é uma importante informação para estabelecer valores-guias ou orientadores, que vêm sido utilizados por diversas agências ambientais pelo mundo para definir níveis de contaminação e toxicidade. Este trabalho avaliou os níveis de Al, As, Cr, Cu, P, Fe, Hg, Ni, Pb e Zn nas imediações da Estação Ecológica (ESEC) Tupinambás - no Arquipélago de Alcatrazes (São Sebastião – SP) e nos arredores das Ilhas das Cabras e Palmas (Ubatuba – SP). Atualmente, a ESEC encontra-se teoricamente livre de influência antrópica, mas vem passando pelo processo de recategorização para tornar-se Parque Nacional Marinho (PARNAM). A inexistência de dados pretéritos específicos para a região torna este trabalho de relevância ambiental. Foram analisadas as concentrações dos elementos químicos aplicando-se os métodos de digestão ácida parcial e total do sedimento, além de parâmetros sedimentológicos (granulometria, teores de matéria orgânica - MO - e carbonato). Resultados mostraram predominância da fração arenosa nos sedimentos (48,7 - 96,6%). Os teores de carbonato estiveram maiores em Alcatrazes (3,2 - 76,6%) que nos ilhotes (2,2 - 68,1%), tendo o inverso sido observado com os teores de MO, tendo a primeira região apresentado valores entre 0,5 e 12,6%, e a segunda, entre 8,7 e 26,8%. Os níveis de metais mais elevados associados às maiores proporções da fração lamosa nas regiões em estudo. As e P apresentaram comportamento diferenciado, sem correlacionar-se com os demais, indicando uma possível contaminação da região. Ao final, estas concentrações, consideradas naturais, poderão ser utilizadas como dados de controle em futuros estudos ambientais e auxiliar na gestão do futuro PARNAM dos Alcatrazes.

Levantamento ecológico rápido da ictiofauna e ictioplâncton na região do Arquipélago dos Alcatrazes, São Sebastião – SP, Brasil

Este trabalho teve como objetivo realizar um levantamento ecológico rápido da ictiofauna demersal, com ocorrência de pelágicos, e do ictioplâncton na região do Arquipélago dos Alcatrazes, São Sebastião (SP - Brasil), na Estação Ecológica Tupinambás. Foram realizadas 15 estações oceanográficas entre os dias 26 e 29 de setembro de 2011, a bordo do N/Pq. Soloncy Moura, do ICMBio. As amostras de ictiofauna foram coletadas com rede de arrasto de fundo com portas e para a coleta de ictioplâncton utilizou-se arrasto oblíquo com rede bongô. Os elasmobrânquios capturados foram pesados e medidos a bordo, sendo devolvidos vivos ao local de captura. Com relação à ictiofauna, foram registradas a ocorrência de 68 espécies, pertencentes a 32 famílias de actinopterígios e cinco de elasmobrânquios. Ctenosciaena gracilicirrhus, Pagrus pagrus, Prionotus punctatus, Porichthys porosissimus, Dactilopterus volitans, Stephanolepis hispidus e Cyclichthys spinosus representaram 81 % dos organismos coletados. Dentre as espécies capturadas, 42 % são de ocorrência comum, tanto ao litoral central (Santos) como às plataformas interna e média do estado de São Paulo. 25 % das espécies já haviam sido registradas em um levantamento, realizado em 1989. Observou-se a ocorrência de Rhinobatos sp., cujos exemplares não foram identificados por se tratar de juvenis de pequeno porte. Em relação ao ictioplâncton, foram identificadas seis famílias de actinopterígios. Sciaenidae e Engraulidae representaram 74 % de um total de 41 larvas. Também foram encontrados 203 ovos, sendo 64 % concentrados principalmente nas estações mais costeiras ou próximas das ilhas, localizadas entre o continente e a Ilha de São Sebastião e a de Alcatrazes. Foram também encontradas paralarvas de Loliginidae e Argonautidae. Este trabalho representou um levantamento rápido, no qual já se observa a importância da região, devido à alta diversidade de espécies e abundância de larvas, além da ocorrência de espécies ameaçadas de extinção.