2 resultados para pairwise boostrap

em Repositório Científico da Universidade de Évora - Portugal


Relevância:

10.00% 10.00%

Publicador:

Resumo:

Describing the genetic patterns and the demographic history of expanding species is essential for providing insights into the processes linked with range dynamics. We analysed the mitochondrial diversity of the Egyptian mongoose (Herpestes ichneumon) across the Iberian Peninsula, where the species is currently expanding northwest. A total of 242 individuals were analysed, together with nine representatives from the North African dispersal source. Haplotype segregation and strong differentiation between Iberian and North African populations confirmed the longterm presence of the species in the Iberian Peninsula. The distribution of mitochondrial diversity fitted the pattern of a historically diversified population in southern Iberia, from which the recent dispersals into northern areas may have occurred. Higher levels of haplotype and nucleotide diversities in the northern areas, together with the heterogeneous distribution of pairwise population differentiations and the weak signal for isolationbydistance suggest the existence of longdispersal migrants across the Iberian Peninsula. Sudden and spatial expansion scenarios of H. ichneumon in the Iberian Peninsula were supported by mismatch analysis and marginally supported by neutrality tests. However, the precise time of occurrence of the detected expansion remains unclear. Future studies should incorporate additional markers in order to further clarify the population dynamics of the Egyptian mongoose in its Iberian range.

Relevância:

10.00% 10.00%

Publicador:

Resumo:

The Pine Wood Nematode (PWN) Bursaphelenchus xylophilus is a severe forest pathogen in countries where it has been introduced and is considered a worldwide quarantine organism. In this study, protein markers for differentiating populations of this nematode were identified by studying differences among four selected Iberian and one American population. These populations were compared by quantitative proteomics (iTRAQ). From a total of 2860 proteins identified using the public database from the B. xylophilus genome project, 216 were unambiguous and significantly differentially regulated in the studied populations. Comparisons of their pairwise ratio were statistically treated and supported in order to convert them into discrete character states, suggesting that 141 proteins were not informative as population specific markers. Application of the Character Compatibility methodology on the remaining 75 proteins (belonging to families with different biological functions) excludes 27 which are incompatible among them. Considering only the compatible proteins, the method selects a subset of 30 specific unique protein markers which allowed the compared classification of the Iberian isolates. This approach makes it easier search for diagnostic tools and phylogenetic inference within species and populations of a pathogen exhibiting a high level of genetic diversity.