RNA-FISH Technique: Probe Cocktails vs Single Probes

RNA-Fluorescence In Situ Hybridization (RNA-FISH) enables to analyze and visualize the microorganisms of interest within microbial communities in their natural environments by fluorescent labelling of specific RNA sequences. Poor accessibility or low content of the RNA target region can cause false positives/negatives due to low fluorescence of the cells. To reduce the chances of this occurring, probe cocktails – i.e. mixture of several probes that hybridize to different regions of the target RNA- has been proposed as an alternative to single probes use for increasing the Fluorescence Intensities (FI). However, is this really a good solution? The key finding of this work was that the use of probe cocktails is not always a good solution for maximizing the FI as at high concentrations the single probe EUK516-6 FAM yielded higher FI than the probe cocktails.

Controlo de infestantes monocotiledóneas com diferentes doses de herbicidas em pós-emergência de trigo mole (Triticum aestivum L.) de sementeira directa

Neste trabalho estudou-se a eficiência dos herbicidas Herbipec 500 FL (s.a. Clortolurão) e Dopler Super (s.a. Diclofope-Metilo+Fenoxaprope-P-Etilo+Mefenepir-Dietilo) no controlo, em pós-emergência de infestantes Monocotiledóneas, e na produção de grão e suas componentes, na cultura do trigo mole em sementeira directa, combinando doses inferiores às recomendadas pelos fabricantes. Os ensaios decorreram nos anos agrícolas de 2006/2007 e 2007/2008, na Herdade do Louseiro no concelho de Évora e na Herdade da Revilheira no concelho de Reguengos de Monsaraz, respectivamente. Na experimentação efectuou-se o estudo dos dois herbicidas, com 3 níveis cada, correspondentes a nove tratamentos. O delineamento experimental foi em blocos casualizados com quatro repetições cada. Verificou-se uma maior eficiência no controlo das plantas infestantes de Lolium rigidum Gaud. e de Juncus bufonius L. e, consequentemente, um maior número de grãos e uma produção de grão de trigo elevada com 2 litros ha-l de Herbipec 500 FL e 0,5 litro ha-1 de Dopler Super. ABSTRACT: The purpose of this work was to study the efficiency of the herbicides Herbipec 500 FL (a.i. chlorotoluron) and Dopler Super (a.i. diclofop-methyl + fenoxaprop-P-ethyl + mefenpyr-diethyl) to control grass weeds at post-emergence in no-till bread wheat and consequently to do the evaluation of potential grain yield combining reduced doses to the recommended ones by the manufacturers. The trials were carried out over two growing seasons (2006/2007 and 2007/2008) on the farm "Revilheira" and on a private farm "Louseiro", both in the district of Évora. Trials to study effects of three doses of a two herbicides, with three levels each, corresponding to nine treatments were executed. The experimental design was a randomized block with four replications each. The results showed a great efficiency and grain yield wheat with the mixture with 2 l ha-1 Herbipec 500 FL and 0,5 1 ha-1 Dopler Super to controlling Lolium spp. and Juncus bufonius L..

Performance of a vertical slot fish pass for the sea lamprey Petromyzon marinus L. and habitat recolonization.

In 2011, a vertical-slot fish pass was built at the Coimbra Açude-Ponte dam (Mondego River, Portugal), approximately 45 km upstream from the river mouth. The performance of this infrastructure for sea lamprey passage was evaluated between 2011 and 2015 using several complementary methodologies, namely radio telemetry [conventional and electromyogram (EMG)], passive integrated transponder (PIT) telemetry and electrofishing surveys. During the study period, the electrofishing revealed a 29-fold increase in the abundance of larval sea lamprey upstream of the fish pass. Of the 20 radio-tagged individuals released downstream from the dam, 33% managed to find and successfully surpass the obstacle in less than 2 weeks, reaching the spawning areas located in the upstream stretch of the main river and in one important tributary. Fish pass efficiency was assessed with a PIT antenna installed in the last upstream pool and revealed a 31% efficiency, with differences between and within migratory seasons. Time of day and river flow significantly influenced the attraction efficiency of the fish pass, with lampreys negotiating it mainly during the night period and when discharge was below 50m3 s_1. Sea lampreys tagged with EMG transmitters took 3 h to negotiate the fish pass, during which high muscular effort was only registered during passage, or passage attempts, of the vertical slots. The use of complementary methodologies provided a comprehensive passage evaluation for sea lamprey, a species for which there is a considerable paucity of valuable data concerning behavioural, physiological and environmental influences on obstacle negotiation.