Genome-wide detection of CNVs and their association with meat tenderness in Nelore cattle.

Brazil is one of the largest beef producers and exporters in the world with the Nelore breed representing the vast majority of Brazilian cattle (Bos taurus indicus). Despite the great adaptability of the Nelore breed to tropical climate, meat tenderness (MT) remains to be improved. Several factors including genetic composition can influence MT. In this article, we report a genome-wide analysis of copy number variation (CNV) inferred from Illumina1 High Density SNP-chip data for a Nelore population of 723 males. We detected >2,600 CNV regions (CNVRs) representing 6.5% of the genome. Comparing our results with previous studies revealed an overlap in 1400 CNVRs (>50%). A total of 1,155 CNVRs (43.6%) overlapped 2,750 genes. They were enriched for processes involving guanosine triphosphate (GTP), previously reported to influence skeletal muscle physiology and morphology. Nelore CNVRs also overlapped QTLs for MT reported in other breeds (8.9%, 236 CNVRs) and from a previous study with this population (4.1%, 109 CNVRs). Two CNVRs were also proximal to glutathione metabolism genes that were previously associated with MT. Genome-wide association study of CN state with estimated breeding values derived from meat shear force identified 6 regions, including a region on BTA3 that contains genes of the cAMP and cGMP pathway. Ten CNVRs that overlapped regions associated with MT were successfully validated by qPCR. Our results represent the first comprehensive CNV study in Bos taurus indicus cattle and identify regions in which copy number changes are potentially of importance for the MT phenotype.

Avaliação de genótipos de girassol (helianthus annuus l.) em Campo Novo Do Parecis - MT.

RESUMO: O presente trabalho teve como objetivo avaliar genótipos de girassol semeados em segunda safra no ano de 2014 em Campo Novo do Parecis ? MT, no campo experimental do Instituto Federal de Educação Ciência e Tecnologia de Mato Grosso. O delineamento experimental utilizado foi o de blocos casualizados, com 16 tratamentos (16 genótipos) e quatro repetições. As parcelas experimentais foram constituídas de 4 linhas com 6,5 m de comprimento, com espaçamento entrelinhas de 0,45 m, contendo área de 11,7 m², totalizando uma área de 748m². Foi utilizada a população de 45000 plantas por hectare. Os dados foram submetidos à análise de variância e ao teste Scott-Knott, a 5% de probabilidade. Para a massa de mil aquênios, os genótipos que se destacaram foram BRS 323, MG 360 e M734 enquanto que as os mais produtivos foram os genótipos MG 360, AGUARÁ 06, MG 305, AGUARÁ 04, CF 101, SYN 045, GNZ NEON, HELIO 251 e SYN 3950HO. ABSTRACT: This study aimed to evaluate genotypes of sunflower seeded second harvest in the year 2014 in Campus Campo Novo do Parecis, in the experimental field of the Instituto Federal de Educação Ciência e Tecnologia de Mato Grosso. The experimental design was a randomized block design with treatments 16 (16 genotypes) and four replications. The experimental plots consisted of four rows 6.5 m long with row spacing of 0.45 m, containing area of 11.7 m², totaling an area of 748 m². The population of 45000 plants per hectare is used. Data were subjected to analysis of variance and the Scott - Knott test at 5 % probability. For the mass of thousand achenes, genotypes that stood out were BRS 323, MG 360 and M734 while the most productive genotypes were the MG 360, AGUARÁ 06, MG 305, AGUARÁ 04, CF 101, SYN 045, GNZ NEON, HELIO 251 and SYN 3950HO.

Genome-wide association studies reveal genomic windows and candidate genes related to fat deposition in chickens.

2016

Identification of CNVs on the genome of Brazilian chicken lines.

2016