Molecular characterization of accessions of a rare genetic resource: sugary cassava (Manihot esculenta Crantz) from Brazilian Amazon

2016

Genetic diversity of mango accessions (Mangifera indica) using new microsatellite markers and morphological descriptors.

Genetic diversity estimates based on morphological and molecular data can provide different information on the relationship between cultivars of a species. This study aimed to develop new microsatellite markers as additional tools in genetic studies on mangoes (Mangifera indica L.), and to analyze the genetic variability of 20 mango cultivars based on morphological descriptors and microsatellite markers. We aimed to better understand the cultivars enhanced breeding histories and to support crossbreeding planning. Positive clones were selected from a DNA library enriched for microsatellite regions for sequencing and primer design. Four plants of each of the 20 accessions were used for observations, based on 48 morphological descriptors. Twenty accessions were analyzed using 27 microsatellite markers, of which 16 were developed during this study. The clusters, based on the morphological descriptors by Ward - MLM strategy and the microsatellite markers, suggested that Brazilian mango cultivars have extensive genetic diversity and are related to cultivars with different provenances, demonstrating their different enhanced breeding histories.

Diversidad genética de la colección de zapote [Pouteria sapota (Jacquin) H.E. Moore & Stearn] del CATIE.

This paper presents the evaluation of qualitative and quantitative characteristics of 63 accessions of the sapodilla collection held in CATTE, Costa Rica. Cluster analysis of data indicated six distinct groups with 15, 14, 8, 8, 15 and 3 trees, respectively. Canonic discriminant analysis and F and X2 tests detected the variables most affecting group differentiation. These were reducing sugars, fruit acidity, fruit and seed length, sucrose, pH, fruit diameter, fruit weight, Brix degrees, total sugar content, total solid content, proteins, carbohydrates, leaf length and width, branch architecture, fructification distribution, fruit production, flowering and fruiting season, The origin of the materiais is related to the classifications obtained.

Divergência genética em genótipos de maracujazeiro azedo, com base em características físicas e químicas dos frutos.

RESUMO: Objetivou-se com o presente trabalho avaliar a divergência genética e as características físicas e químicas de frutos de duas populações do maracujazeiro azedo na região Norte do Espírito Santo, como as progênies de meio-irmãos de acesso local de um plantio comercial (genótipos: 1; 2; 3; 4; 5; 6; 7; 8; 9 e 10) e do híbrido BRS Ouro Vermelho (genótipos: 11; 12; 13; 14; 15; 16; 17; 18; 19 e 20). A divergência genética foi avaliada por procedimentos multivariados como a distância generalizada de Mahalanobis (D2) e pelos métodos de agrupamento de otimização de Tocher e UPGMA. Encontrou-se divergência genética entre as populações estudadas promovendo a formação de grupos diferentes entre o método de Tocher e do UPGMA. As características, referentes ao tamanho do fruto, diâmetro polar e equatorial, foram as que mais contribuíram na diversidade genética dos genótipos. Nas populações estudadas de maracujazeiro azedo há grande variabilidade genética quanto às características avaliadas, o que possibilita selecionar plantas com elevado potencial para fins de melhoramento genético. O híbrido BRS Ouro Vermelho apresenta boa adaptação às condições locais. ABSTRACT: The aim of the present work was to evaluate genetic divergence and physical and chemical characteristics in fruit of two populations of sour passion fruit in the northern region of the State of Espírito Santo, Brazil, these being half-sibling progenies from local accessions of a commercial crop (genotypes 1, 2, 3, 4, 5, 6, 7, 8, 9 and 10) and the hybrid BRS Ouro Vermelho (genotypes: 11, 12, 13, 14, 15, 16, 17, 18, 19 and 20). Genetic divergence was evaluated using such multivariate procedures as the generalised Mahalanobis distance (D2) and the Tocher optimisation and UPGMA clustering methods. Genetic divergence was found between the populations under study, promoting the formation of different groups between the Tocher and UPGMA methods. As characteristics for fruit size, the polar and equatorial diameters had the most impact on the genetic diversity of the genotypes. In the populations of sour passion fruit being studied, great genetic variability is seen in the evaluated characteristics, making it possible to select plants of high potential for breeding purposes. The BRS Ouro Vermelho hybrid is well adapted to the local conditions.

Genetic diversity of the forage peanut in the Jequitinhonha, São Francisco, and Paranã River valleys of Brazil.

Arachis pintoi and A. repens are legumes with a high forage value that are used to feed ruminants in consortium systems. Not only do they increase the persistence and quality of pastures, they are also used for ornamental and green cover. The objective of this study was to analyze microsatellite markers in order to access the genetic diversity of 65 forage peanut germplasm accessions in the section Caulorrhizae of the genus Arachis in the Jequitinhonha, São Francisco and Paranã River valleys of Brazil. Fifty-seven accessions of A. pintoi and eight of A. repens were analyzed using 17 microsatellites, and the observed heterozygosity (HO), expected heterozygosity (HE), number of alleles per locus, discriminatory power, and polymorphism information content were all estimated. Ten loci (58.8%) were polymorphic, and 125 alleles were found in total. The HE ranged from 0.30 to 0.94, and HO values ranged from 0.03 to 0.88. By using Bayesian analysis, the accessions were genetically differentiated into three gene pools. Neither the unweighted pair group method with arithmetic mean nor a neighbor-joining analysis clustered samples into species, origin, or collection area. These results reveal a very weak genetic structure that does not form defined clusters, and that there is a high degree of similarity between the two species.

Synchronizing the in vitro germination of Psidium guineense Sw. seeds by means of osmotic priming.

The Brazilian guava (Psidium guineense Swartz) is seed-propagated and, being native to the Caatinga biome, may frequently have uneven germination.Thus, we aimed to evaluate the synchronization of the in vitro seed germination of three accessions of the Brazilian guava, using water, polyethyleneglycol (PEG 6000), and potassium nitrate (KNO3) at different potentials and times of osmotic priming. Seeds from three accessions of the Brazilian guava (Y85, Y93,and Y97) from the UNEB/BA Germplasm Active Bank were subjected to the following pretreatments: -0.6, -1.0, -1.4, and -1,8 MPa PEG 6000; 10 and 20% KNO3 for 24h; 10 and 20% KNO3 for 48h; water for 24 and 48h; and non-primed seeds as the control. The experimental design was therefore a 10x3+1 factorial scheme. We assessed the germination percentage (G), mean germination time (MGT), germination speed (GS), and germination speed index (GSI). Data was subjected to analysis of variance followed by a means test (Duncan at 5% probability) and regression. There was interaction between the priming treatments and accessions for all evaluated features, except G. PEG 6000 decreased the MGT (from 6 to 8 days) and increased GS and GSI of seeds from all three accessions at potentials -1.0 to -1.5 MPa.Water-priming had a positive effect on MGT, GS, and GSI of accession Y85 seeds. KNO3 negatively affected germination of seeds from all three accessions. Thereby, we could synchronize seed germination of accessions Y85 and Y97 with PEG 6000.