Integrating data from heterogeneous DNA microarray platforms

DNA microarrays are one of the most used technologies for gene expression measurement. However, there are several distinct microarray platforms, from different manufacturers, each with its own measurement protocol, resulting in data that can hardly be compared or directly integrated. Data integration from multiple sources aims to improve the assertiveness of statistical tests, reducing the data dimensionality problem. The integration of heterogeneous DNA microarray platforms comprehends a set of tasks that range from the re-annotation of the features used on gene expression, to data normalization and batch effect elimination. In this work, a complete methodology for gene expression data integration and application is proposed, which comprehends a transcript-based re-annotation process and several methods for batch effect attenuation. The integrated data will be used to select the best feature set and learning algorithm for a brain tumor classification case study. The integration will consider data from heterogeneous Agilent and Affymetrix platforms, collected from public gene expression databases, such as The Cancer Genome Atlas and Gene Expression Omnibus.

Portuguese publication in the aim of regional science: a study of articles published in RPER from 2003 to 2015

This paper is a study of the full content of articles published by RPER, the Portuguese Review of Regional Studies, from the time it was launched in 2003 until the first quarter of 2015. RPER is a journal edited by the Portuguese section of the European Regional Science Association, which was established in the first half of the 1980s. The Association (APDR) and the journal are the result of contributions by researchers and technicians from different scientific fields, including mainly Economics, Geography, Sociology, Engineering and Architecture. The main focus of these contributions is the socio-economic life of concrete sites, and the way this life is conditioned by resources and capabilities, the historical and cultural heritage and institutions. Content analysis was undertaken to identify the main subjects chosen during the total period under analysis, the nature of the articles published (theoretical or empirical) and the main analytical framework used. The analysis also covers sub-periods to investigate major trends found in terms of subjects chosen and analytical methods, questioning the rationale behind them. The paper concludes with a few notes regarding the social echo the research received and an identification of the main limitations of the research. In the first part of the article, we conduct a summary review of the genesis and evolution of Regional Science at international level to serve as a basis for the empirical approach developed.

As imigrantes brasileiras no jornalismo impresso regional

O estudo sobre a representação das brasileiras nos media é revisto sob vários aspectos e nos diversos meios de comunicação. Alguns estudos aprofundam a imagem das imigrantes, enquanto outros se concentram nos meios (rádio, televisão e imprensa). Existe ainda uma linha de investigação que se centra nos estudos da recepção. Todavia, verificámos a escassez de um estudo específico sobre a representação deste grupo no jornalismo de proximidade. Esta comunicação tem por objectivo apresentar parte dos resultados sobre a representação dos imigrantes brasileiros nas notícias publicadas durante o ano de 2007 em dois jornais regionais (um português – Diário do Minho – e um italiano – L'Adige). A escolha de um jornal externo ao contexto português foi extremamente enriquecedora para identificar possíveis convergências no tratamento dos imigrantes brasileiros (homens e mulheres) em diferentes contextos sócioculturais. Além disso, tanto Portugal como Itália foram países de forte emigração, influenciando os processos migratórios de ambos. A investigação inicial mostrou uma acentuada assimetria de género, o que nos levou a aprofundar a análise sob este aspecto. Observámos que os jornais analisados, em relação ao tratamento informativo da imigrante brasileira, trabalham na mesma linha dos jornais de âmbito nacional e, mesmo que em escala inferior, continuam a representar estas mulheres com um baixo estatuto, associadas a temas e comportamentos socialmente conotados com a marginalidade. De salientar que as imigrantes brasileiras que têm visibilidade nas peças noticiosas dos dois jornais são geralmente conotadas com a prostituição, clandestinidade, crime e exploração.

Feature Nets: behavioural modelling of software product lines

Software product lines (SPL) are diverse systems that are developed using a dual engineering process: (a)family engineering defines the commonality and variability among all members of the SPL, and (b) application engineering derives specific products based on the common foundation combined with a variable selection of features. The number of derivable products in an SPL can thus be exponential in the number of features. This inherent complexity poses two main challenges when it comes to modelling: Firstly, the formalism used for modelling SPLs needs to be modular and scalable. Secondly, it should ensure that all products behave correctly by providing the ability to analyse and verify complex models efficiently. In this paper we propose to integrate an established modelling formalism (Petri nets) with the domain of software product line engineering. To this end we extend Petri nets to Feature Nets. While Petri nets provide a framework for formally modelling and verifying single software systems, Feature Nets offer the same sort of benefits for software product lines. We show how SPLs can be modelled in an incremental, modular fashion using Feature Nets, provide a Feature Nets variant that supports modelling dynamic SPLs, and propose an analysis method for SPL modelled as Feature Nets. By facilitating the construction of a single model that includes the various behaviours exhibited by the products in an SPL, we make a significant step towards efficient and practical quality assurance methods for software product lines.

Potencial geopolítico da língua portuguesa para Timor-Leste

Dissertação de mestrado em Relações Internacionais

Índice Digital Regional 2014

O objetivo subjacente a toda a investigação que deu origem ao Índice Digital Regional (IDR), inserida num projeto de doutoramento, ia no sentido da “compreensão da realidade da Sociedade da Informação nas sete regiões NUTs II portuguesas, comparando-as e contrastando-as”. À semelhança do que acontece em grande parte dos indicadores de desenvolvimento, em que as assimetrias regionais são uma evidência verificada há várias décadas, importava perceber até que ponto o desenvolvimento da Sociedade da Informação em Portugal está a ser desencadeado sem ter ou não em atenção os valores da equidade, da coesão nacional e da solidariedade regional. Este artigo analisa os resultados do IDR recalculado com os dados estatísticos mais recentes.