Extensive admixture and selective pressure across the Sahel Belt

Genome-wide studies of African populations have the potential to reveal powerful insights into the evolution of our species, as these diverse populations have been exposed to intense selective pressures imposed by infectious diseases, diet, and environmental factors. Within Africa, the Sahel Belt extensively overlaps the geographical center of several endemic infections such as malaria, trypanosomiasis, meningitis, and hemorrhagic fevers. We screened 2.5 million single nucleotide polymorphisms in 161 individuals from 13 Sahelian populations, which together with published data cover Western, Central, and Eastern Sahel, and include both nomadic and sedentary groups. We confirmed the role of this Belt as a main corridor for human migrations across the continent. Strong admixture was observed in both Central and Eastern Sahelian populations, with North Africans and Near Eastern/Arabians, respectively, but it was inexistent in Western Sahelian populations. Genome-wide local ancestry inference in admixed Sahelian populations revealed several candidate regions that were significantly enriched for non-autochthonous haplotypes, and many showed to be under positive selection. The DARC gene region in Arabs and Nubians was enriched for African ancestry, whereas the RAB3GAP1/LCT/MCM6 region in Oromo, the TAS2R gene family in Fulani, and the ALMS1/NAT8 in Turkana and Samburu were enriched for non-African ancestry. Signals of positive selection varied in terms of geographic amplitude. Some genomic regions were selected across the Belt, the most striking example being the malaria-related DARC gene. Others were Western-specific (oxytocin, calcium, and heart pathways), Eastern-specific (lipid pathways), or even population-restricted (TAS2R genes in Fulani, which may reflect sexual selection).

New bio-strategies for ochratoxin A detoxification using lactic acid bacteria

The occurrence of mycotoxigenic moulds such as Aspergillus, Penicillium and Fusarium in food and feed has an important impact on public health, by the appearance of acute and chronic mycotoxicoses in humans and animals, which is more severe in the developing countries due to lack of food security, poverty and malnutrition. This mould contamination also constitutes a major economic problem due the lost of crop production. A great variety of filamentous fungi is able to produce highly toxic secondary metabolites known as mycotoxins. Most of the mycotoxins are carcinogenic, mutagenic, neurotoxic and immunosuppressive, being ochratoxin A (OTA) one of the most important. OTA is toxic to animals and humans, mainly due to its nephrotoxic properties. Several approaches have been developed for decontamination of mycotoxins in foods, such as, prevention of contamination, biodegradation of mycotoxins-containing food and feed with microorganisms or enzymes and inhibition or absorption of mycotoxin content of consumed food into the digestive tract. Some group of Gram-positive bacteria named lactic acid bacteria (LAB) are able to release some molecules that can influence the mould growth, improving the shelf life of many fermented products and reducing health risks due to exposure to mycotoxins. Some LAB are capable of mycotoxin detoxification. Recently our group was the first to describe the ability of LAB strains to biodegrade OTA, more specifically, Pediococcus parvulus strains isolated from Douro wines. The pathway of this biodegradation was identified previously in other microorganisms. OTA can be degraded through the hydrolysis of the amide bond that links the L-β-phenylalanine molecule to the ochratoxin alpha (OTα) a non toxic compound. It is known that some peptidases from different origins can mediate the hydrolysis reaction like, carboxypeptidase A an enzyme from the bovine pancreas, a commercial lipase and several commercial proteases. So, we wanted to have a better understanding of this OTA degradation process when LAB are involved and identify which molecules where present in this process. For achieving our aim we used some bioinformatics tools (BLAST, CLUSTALX2, CLC Sequence Viewer 7, Finch TV). We also designed specific primers and realized gene specific PCR. The template DNA used came from LAB strains samples of our previous work, and other DNA LAB strains isolated from elderberry fruit, silage, milk and sausages. Through the employment of bioinformatics tools it was possible to identify several proteins belonging to the carboxypeptidase family that participate in the process of OTA degradation, such as serine type D-Ala-D-Ala carboxypeptidase and membrane carboxypeptidase. In conclusions, this work has identified carboxypeptidase proteins being one of the molecules present in the OTA degradation process when LAB are involved.

Biodegradação de Ochratoxin A por Pediococcus parvulus

Algumas bactérias do ácido láctico (BAL) são capazes de destoxificar micotoxinas através de processos de adsorção às suas paredes celulares ou através de processos de biotransformação em compostos menos tóxicos. Uma das micotoxinas mais importantes encontradas em produtos agrícolas é a ocratoxina A (OTA). A OTA é conhecida principalmente pela sua nefro e carcinogenicidade, estando classificada no Grupo 2B pelo IARC. O presente trabalho descreve a destoxificação de OTA por estirpes de Pediococcus parvulus que foram isoladas de vinhos do Douro. As estirpes foram identificadas e caracterizadas utilizando uma abordagem polifásica que utilizou métodos feno e genotípicos. Para identificar e caracterizar a sua capacidade para destoxificar a OTA, as estirpes foram cultivadas em meio MRS suplementado com esta micotoxina (1 µg/mL). A concentração de OTA, a temperatura de incubação e a concentração de inóculo foram os parâmetros cujo efeito na destoxificação foi avaliado. Verificou-se que a OTA foi degradada em OT pelas estirpes de P. parvulus em todas as condições testadas e que a estirpe tipo desta espécie não apresentou essa capacidade. Ademais, a OT foi confirmada por LC-MS/MS. A conversão de OTA em OT indica que a ligação amida presente na micotoxina foi hidrolisada por uma peptidase. Verificou-se também que a taxa de biodegradação da OTA depende do tamanho do inóculo e da temperatura de incubação. Às condições ótimas (10 9 CFU/mL e 30 ºC), 50% e 90% da OTA foi degradado em 6 e 19 h, respetivamente. Por outro lado, observou-se que as células mortas de P. parvulus adsorveram apenas 1,3% da OTA, o que exclui este mecanismo na eliminação da micotoxina pelas bactérias. A biodegradação de OTA por P. parvulus UTAD 473 foi também avaliada e observada em mostos de uvas. Experiências de vinificação foram também realizadas. Uma vez que algumas estirpes de P. parvulus têm propriedades probióticas relevantes, as estirpes isoladas de vinhos do Douro podem ser de particular interesse para aplicações em alimentos e rações de forma a neutralizar os efeitos tóxicos da OTA.