2 resultados para Statistical evaluation

em Institutional Repository of Leibniz University Hannover


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The belemnite species Hibolites jaculoides Swinnerton, 1937 is redefined on the basis of a bed by bed collection of 2100 rostrums from the Upper Hauterivian (Cretaceous deposits of NW Germany and Yorkshire, England. According to the variate-statistical evaluation of the data gathered, definite phylotic changes are disdernible within the species. All characters measured indicate a definite tendency towards reduction in size. Large-sized, club-shaped specimens are typical for the stratigraphically older beds, delicate and slender-built forms dominate in the upper Upper Hauterivian. Comparison of the material from England and Germany yielded that three of the varieties described by Swinnerton are limited mainly to the lower Upper Hauterivian of England.

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Statistical association between a single nucleotide polymorphism (SNP) genotype and a quantitative trait in genome-wide association studies is usually assessed using a linear regression model, or, in the case of non-normally distributed trait values, using the Kruskal-Wallis test. While linear regression models assume an additive mode of inheritance via equi-distant genotype scores, Kruskal-Wallis test merely tests global differences in trait values associated with the three genotype groups. Both approaches thus exhibit suboptimal power when the underlying inheritance mode is dominant or recessive. Furthermore, these tests do not perform well in the common situations when only a few trait values are available in a rare genotype category (disbalance), or when the values associated with the three genotype categories exhibit unequal variance (variance heterogeneity). We propose a maximum test based on Marcus-type multiple contrast test for relative effect sizes. This test allows model-specific testing of either dominant, additive or recessive mode of inheritance, and it is robust against variance heterogeneity. We show how to obtain mode-specific simultaneous confidence intervals for the relative effect sizes to aid in interpreting the biological relevance of the results. Further, we discuss the use of a related all-pairwise comparisons contrast test with range preserving confidence intervals as an alternative to Kruskal-Wallis heterogeneity test. We applied the proposed maximum test to the Bogalusa Heart Study dataset, and gained a remarkable increase in the power to detect association, particularly for rare genotypes. Our simulation study also demonstrated that the proposed non-parametric tests control family-wise error rate in the presence of non-normality and variance heterogeneity contrary to the standard parametric approaches. We provide a publicly available R library nparcomp that can be used to estimate simultaneous confidence intervals or compatible multiplicity-adjusted p-values associated with the proposed maximum test.