The environmental management of prawn farming in Queensland - worlds best practice

This article provides a summary of research undertaken during a seven-year study from 1995-2002 which focussed on prawn farm ecosystems, their ecological impacts, and cost-effective effluent treatment systems.

The conservation status of the world’s reptiles

Effective and targeted conservation action requires detailed information about species, their distribution, systematics and ecology as well as the distribution of threat processes which affect them. Knowledge of reptilian diversity remains surprisingly disparate, and innovative means of gaining rapid insight into the status of reptiles are needed in order to highlight urgent conservation cases and inform environmental policy with appropriate biodiversity information in a timely manner. We present the first ever global analysis of extinction risk in reptiles, based on a random representative sample of 1500 species (16% of all currently known species). To our knowledge, our results provide the first analysis of the global conservation status and distribution patterns of reptiles and the threats affecting them, highlighting conservation priorities and knowledge gaps which need to be addressed urgently to ensure the continued survival of the world’s reptiles. Nearly one in five reptilian species are threatened with extinction, with another one in five species classed as Data Deficient. The proportion of threatened reptile species is highest in freshwater environments, tropical regions and on oceanic islands, while data deficiency was highest in tropical areas, such as Central Africa and Southeast Asia, and among fossorial reptiles. Our results emphasise the need for research attention to be focussed on tropical areas which are experiencing the most dramatic rates of habitat loss, on fossorial reptiles for which there is a chronic lack of data, and on certain taxa such as snakes for which extinction risk may currently be underestimated due to lack of population information. Conservation actions specifically need to mitigate the effects of human-induced habitat loss and harvesting, which are the predominant threats to reptiles.

The life history of Phalacrognathus Muelleri (Macleay) (Coleoptera: Lucanidae)

The life history of Phalacrognathus muelleri (Macleay) is described and aspects of its biology discussed. The species is restricted to the wet tropics of northern Queensland where it breeds in rotting wood in rainforest. Larvae have been extracted from the wood of 27 tree species in 13 families. All larvae found were in wood attacked by white rot fungi. The final instar larva is described. Larva, pupa, and parasites are figured.

New species of Laxotela Winterton & Irwin from Australia (Diptera: Therevidae: Agapophytinae)

Two new species of the endemic Australian stiletto fly genus Laxotela Winterton & Irwin are described and figured. Laxotela elongata sp. nov. is described from Queensland while Laxotela plata sp. nov. is described from south-eastern mainland Australia. Laxotela ornata (Krober) comb. nov. (originally Spatulipalpa Krober) was recently placed as incertae sedis within Therevidae, but is herein transferred to Laxotela. A revised key to Laxotela species is presented.

New species of Acraspisoides Hill & Winterton and Bonjeania Irwin & Lyneborg (Diptera: Therevidae: Agapophytinae), with the description of a new genus

The stiletto fly subfamily Agapophytinae is diverse and species rich in Australasia, with numerous undescribed species. A new species of Acraspisoides Hill & Winterton, A. monticola sp. nov., is described from females collected in montane localities in eastern Australia. Eight new species of Bonjeania Irwin & Lyneborg are also described, raising the total number of known species to 18. Five new species, B. affinis sp. nov., B. apluda sp. nov., B. bapsis sp. nov., B. webbi sp. nov. and B. zwicki sp. nov., all have a distinctive, forward-protruding head with antennae on a raised tubercle. Two other new species, B. argentea sp. nov. and B. jefferiesi sp. nov., are closely related to B. segnis (White), with very similar shaped male genitalia and body shape. An eighth species, B. lambkinae sp. nov., is closely related to B. clamosis Winterton & Skevington. Bonjeania and Acraspisoides are diagnosed and revised keys to species presented. An unusual new therevid, Vomerina humbug gen. et sp. nov., is also described and figured based on a series of males from New South Wales. This new genus likely represents the sister taxon to Bonjeania.

Kaurimyia gen. nov.: Discovery of Apsilocephalidae (Diptera: Therevoid clade) in New Zealand

A new genus (Kaurimyia thorpei gen. et sp. nov.) of the enigmatic fly family Apsilocephalidae (Asiloidea) is described from New Zealand. Kaurimyia thorpei gen. et sp. nov. is described and figured from male and female specimens, one of which was collected in Kauri forest near Auckland (North Island). While superficially similar to Apsilocephala Krober, this new genus shows closer affinities to Clesthentia White (=Clesthentiella Nagatomi, Saigusa, Nagatomi et Lyneborg syn. nov.) from Tasmania based on genitalic characters such as aedeagus shape and non-articulated surstyli. Apsilocephalidae is presently known from just a few extant species in North America and Tasmania (Australia), although extinct species are recorded from the Holarctic and Oriental regions. This is the first description of the family from New Zealand.

Towards responsible native fish stocking: identifying management concerns and appropriate research methodologies

A major outcome of this project has been the identification and prioritisation of the major management issues related to the ecological impacts of fish stocking and the elucidation of appropriate research methodologies that can be used to investigate these issues. This information is paramount to development of the relevant research projects that will lead to stocking activities aligned with world’s best practice, a requisite for ecologically sustainable recreational freshwater fisheries. In order to quantify the major management issues allied to the sustainability of freshwater fish stocking, stakeholders from around Australia were identified and sent a questionnaire to determine which particular issues they regarded as important. These stakeholders included fisheries managers or researchers from Federal, Territory and State jurisdictions although others, including representatives from environment and conservation agencies and peak recreational fishing and stocking groups were also invited to give their opinions. The survey was completed in late 2007 and the results analysed to give a prioritized list of key management issues relating to the impacts of native fish stocking activities. In the analysis, issues which received high priority rankings were flagged as potential topics for discussion at a future expert workshop. Identified high priority issues fell into the following core areas: marking techniques, genetics, population dynamics, introduction of pathogens and exotic biological material and ecological, biological and conservation issues. The next planned outcome, determination of the most appropriate methodologies to address these core issues in research projects, was addressed through the outputs of an expert workshop held in early 2008. Participants at this workshop agreed on a range of methodologies for addressing priority sustainability issues and decided under what circumstances that these methodologies should be employed.

Whole-genome sequencing reveals untapped genetic potential in Africa’s indigenous cereal crop sorghum

Sorghum is a food and feed cereal crop adapted to heat and drought and a staple for 500 million of the world’s poorest people. Its small diploid genome and phenotypic diversity make it an ideal C4 grass model as a complement to C3 rice. Here we present high coverage (16-45 × ) resequenced genomes of 44 sorghum lines representing the primary gene pool and spanning dimensions of geographic origin, end-use and taxonomic group. We also report the first resequenced genome of S. propinquum, identifying 8 M high-quality SNPs, 1.9 M indels and specific gene loss and gain events in S. bicolor. We observe strong racial structure and a complex domestication history involving at least two distinct domestication events. These assembled genomes enable the leveraging of existing cereal functional genomics data against the novel diversity available in sorghum, providing an unmatched resource for the genetic improvement of sorghum and other grass species.

Efficient eucalypt cell wall deconstruction and conversion for sustainable lignocellulosic biofuels

In order to meet the world’s growing energy demand and reduce the impact of greenhouse gas emissions resulting from fossil fuel combustion, renewable plant-based feedstocks for biofuel production must be considered. The first-generation biofuels, derived from starches of edible feedstocks, such as corn, create competition between food and fuel resources, both for the crop itself and the land on which it is grown. As such, biofuel synthesized from non-edible plant biomass (lignocellulose) generated on marginal agricultural land will help to alleviate this competition. Eucalypts, the broadly defined taxa encompassing over 900 species of Eucalyptus, Corymbia, and Angophora are the most widely planted hardwood tree in the world, harvested mainly for timber, pulp and paper, and biomaterial products. More recently, due to their exceptional growth rate and amenability to grow under a wide range of environmental conditions, eucalypts are a leading option for the development of a sustainable lignocellulosic biofuels. However, efficient conversion of woody biomass into fermentable monomeric sugars is largely dependent on pretreatment of the cell wall, whose formation and complexity lend itself toward natural recalcitrance against its efficient deconstruction. A greater understanding of this complexity within the context of various pretreatments will allow the design of new and effective deconstruction processes for bioenergy production. In this review, we present the various pretreatment options for eucalypts, including research into understanding structure and formation of the eucalypt cell wall.