Analysis of the genome content of Lactococcus garvieae by genomic interspecies microarray hybridization

BACKGROUND Lactococcus garvieae is a bacterial pathogen that affects different animal species in addition to humans. Despite the widespread distribution and emerging clinical significance of L. garvieae in both veterinary and human medicine, there is almost a complete lack of knowledge about the genetic content of this microorganism. In the present study, the genomic content of L. garvieae CECT 4531 was analysed using bioinformatics tools and microarray-based comparative genomic hybridization (CGH) experiments. Lactococcus lactis subsp. lactis IL1403 and Streptococcus pneumoniae TIGR4 were used as reference microorganisms. RESULTS The combination and integration of in silico analyses and in vitro CGH experiments, performed in comparison with the reference microorganisms, allowed establishment of an inter-species hybridization framework with a detection threshold based on a sequence similarity of >or= 70%. With this threshold value, 267 genes were identified as having an analogue in L. garvieae, most of which (n = 258) have been documented for the first time in this pathogen. Most of the genes are related to ribosomal, sugar metabolism or energy conversion systems. Some of the identified genes, such as als and mycA, could be involved in the pathogenesis of L. garvieae infections. CONCLUSIONS In this study, we identified 267 genes that were potentially present in L. garvieae CECT 4531. Some of the identified genes could be involved in the pathogenesis of L. garvieae infections. These results provide the first insight into the genome content of L. garvieae.

High resolution spectroscopic characterization of the FGK stars in the Solar neighborhood

We present the most recent results of our ongoing long-term high resolution spectroscopic study of nearby (d ≤ 25 pc) FGK stars which aim is to characterize the local properties of the Galaxy, in particular the star-formation history. A through analysis has been carried out for 253 cool stars in the solar neighborhood. This includes radial and rotational velocities determinations, chromospheric activity levels inference, kinematic analysis, and age estimates. This study does not only shed new light on the issue of stellar formation history but also contributes to any present or future mission aiming to detect extra-solar planets. Exo-planets are likely to be found orbiting around nearby cool stars and their detection and characterization is highly dependent on the precise determination of fundamental stellar parameters such as age, activity levels. Therefore, our study is of paramount importance to ensure the success of any such mission.

Library of high-resolution UES echelle spectra of F, G, K and M field dwarf stars

We present a library of Utrecht echelle spectrograph (UES) observations of a sample of F, G, K and M field dwarf stars covering the spectral range from 4800 Å to 10600 Å with a resolution of 55000. These spectra include some of the spectral lines most widely used as optical and near-infrared indicators of chromospheric activity such as Hβ, Mg I b triplet, Na I D_1, D_2, He I D_3, Hα, and Ca II IRT lines, as well as a large number of photospheric lines which can also be affected by chromospheric activity. The spectra have been compiled with the aim of providing a set of standards observed at high-resolution to be used in the application of the spectral subtraction technique to obtain the active-chromosphere contribution to these lines in chromospherically active single and binary stars. This library can also be used for spectral classification purposes. A digital version with all the spectra is available via ftp and the World Wide Web (WWW) in both ASCII and FITS formats.

High-resolution spatial-response measurements of optical nano-antennas in the visible

A few years ago, some of the authors of the paper demonstrated the resonance of optical antennas in the visible frequencies. The results of that paper were obtained using experimental techniques that were primarily developed for the measurement of antenna-coupled detectors in the infrared. In the present paper, we show the results of spatial-response mapping obtained by using a dedicated measurement station for the characterization of optical antennas in the visible. At the same time, the bottleneck in the spatial responsivity calculation represented by the beam characterization has been approached from a different perspective. The proposed technique uses a collection of knife edge measurements in order to avoid the use of any model of the laser beam irradiance. By taking all this into account we present the spatial responsivity of optical antennas measured with high spatial resolution in the visible.

Rapid identification and differentiation of Mycobacterium avium subspecies paratuberculosis types by use of real-time PCR and high-resolution melt analysis of the MAP1506 locus

High-resolution melt (HRM) analysis can identify sequence polymorphisms by comparing the melting curves of amplicons generated by real-time PCR amplification. We describe the application of this technique to identify Mycobacterium avium subspecies paratuberculosis types I, II, and III. The HRM approach was based on type-specific nucleotide sequences in MAP1506, a member of the PPE (proline-proline-glutamic acid) gene family.