Phylogeography of Pinus tabulaeformis Carr. (Pinaceae), a dominant species of coniferous forest in northern China

How coniferous trees in northern China changed their distribution ranges in response to Quaternary climatic oscillations remains largely unknown. Here we report a study of the phylogeography of Pinus tabulaeformis, an endemic and dominant species of coniferous forest in northern China. We examined sequence variation of maternally inherited, seed-dispersed mitochondrial DNA (mtDNA) (nad5 intron 1 and nad4/3-4) and paternally inherited, pollen- and seed-dispersed chloroplast DNA (cpDNA) (rpl16 and trnS-trnG) within and among 30 natural populations across the entire range of the species. Six mitotypes and five chlorotypes were recovered among 291 trees surveyed. Population divergence was high for mtDNA variation (G(ST) = 0.738, N-ST = 0.771) indicating low levels of seed-based gene flow and significant phylogeographical structure (N-ST > G(ST), P < 0.05). The spatial distribution of mitotypes suggests that five distinct population groups exist in the species: one in the west comprising seven populations, a second with a north-central distribution comprising 15 populations, a third with a southern and easterly distribution comprising five populations, a fourth comprising one central and one western population, and a fifth comprising a single population located in the north-central part of the species' range. Each group apart from the fourth group is characterized by a distinct mitotype, with other mitotypes, if present, occurring at low frequency. It is suggested, therefore, that most members of each group apart from Group 4 are derived from ancestors that occupied different isolated refugia in a previous period of range fragmentation of the species, possibly at the time of the Last Glacial Maximum. Possible locations for these refugia are suggested. A comparison of mitotype diversity between northern and southern subgroups within the north-central group of populations (Group 2) showed much greater uniformity in the northern part of the range both within and between populations. This could indicate a northward migration of the species from a southern refugium in this region during the postglacial period, although alternative explanations cannot be ruled out. Two chlorotypes were distributed across the geographical range of the species, resulting in lower levels of among-population chlorotype variation. The geographical pattern of variation for all five chlorotypes provided some indication of the species surviving past glaciations in more than one refugium, although differentiation was much less marked, presumably due to the greater dispersal of cpDNA via pollen.

Non-microcystin producing Microcystis wesenbergii (Komarek) Komarek (Cyanobacteria) representing a main waterbloom-forming species in Chinese waters

It is well known that several morphospecies of Microcystis, such as Microcystis aeruginosa (Kutzing) Lemmermann and Microcystis viridis (A. Brown) Lemmermann can produce hepatotoxic microcystins. However, previous studies gave contradictory conclusions about microcystin production of Microcystis wesenbergii (Komarek) Komarek. In the present study, ten Microcystis morphospecies were identified in waterblooms of seven Chinese waterbodies, and Microcystis wesenbergii was shown as the dominant species in these waters. More than 250 single colonies of M. wesenbergii were chosen, under morphological identification, to examine whether M. wesenbergii produce hepatotoxic microcystin by using multiplex PCR for molecular detection of a region (mcyA) of microcystin synthesis genes, and chemical analyses of microcystin content by ELISA and HPLC for 21 isolated strains of M. wesenbergii from these waters were also performed. Both molecular and chemical methods demonstrated that M. wesenbergii from Chinese waters did not produce microcystin. (C) 2007 Elsevier Ltd. All rights reserved.

榧属（Torrya Arn.）分类研究及其在红豆杉科中的系统位置

本论文对榧属(TorreyI)的研究历史作了回顾．以形态性状为依据，结合叶片的解剖，花粉表面的电镜观察，以及种子蛋白的电泳等，对榧属的系统分类进行了研究。结果表明： l、支持根据种子胚乳深皱与微皱分榧属为两个组的观点． 2、从叶片气孔带乳突的特征及种子蛋白电泳带的类型，似可支持榧属两组的建立． 3、根据各种榧树叶肉组织中石细胞的观察，不支持将石细胞的有无作为分组的特征。 4、云南榧与巴山榧叶的解剖特征有较多相似性，但在石细胞的含量、栅栏组织细胞层数及结晶大小等方面存在差别．考虑到其他性状及地理分布，认为将云南榧改为巴山榧的变种较为自然。 5、本属植物花粉形态较为一致，种问无明显的差别．对组和种的划分无重要参考价值． 6、经研究订正，榧属共6种2变种和11个栽培变种。其中1新变种（九龙山榧），1改级新组合（云南榧），6个新载培变种。 7、结合前人的研究，作者归纳出红豆杉科植物的进化趋势，支持榧属为进化类群的观点。

硬叶常绿阔叶林建群种-高山栎组的生物生态学研究

栎属(Quercus)高山栎组（Sect．Suber)是我国硬叶常绿阔叶林的主要建群种。本文从地理分布、群落特征、形态解剖特性方而对高山栎的生态适应性进行了研究，讨论了它们的起源与青藏高原隆升的关系。得到如下结论： 1．丽江一木里为现代高山栎的分布中心，高山栎组的种数等值线从这里呈同心园向外扩散。地质历史时期存在于该地的康滇古陆应当是高山栎的起源地。2．高山栎的水平分布不超过北纬32º，即亚热带的北界;垂直分布表现为超地带性的特点，从海拔1200到4300m，随海拔的增高而矮生。3．丽江有硬叶常绿阔叶林8种群落类型，它们的结构、分布各有其特点。4．高山栎组的表皮特征，除气孔器类型外，其他表皮性状受环境修饰，不是稳定的性状。气孔的大小、数目随环境有规律性地变化。5．川滇高山栎为复表皮，表皮附属物、角质膜及叶肉细胞随环境有规律性变化。6．虽然高山栎组的叶片表现为硬叶的特性，但解剖结构差别明显随环境发生变化。

青藏苔草和紫花针茅形态结构及其生态适应性

为了研究高原植物对青藏高原特殊环境的适应机制，本文选取青藏高原高寒草原优势物种紫花针茅和青藏苔草作为研究物种，运用数量分析的方法对它们的形态结构及生态适应性进行了研究。试图通过对环境因子和这些形态结构变化之间的关系进行分析以找出这两种植物是如何适应严酷的环境以及这两种具有不同克隆生长方式的植物是否具有不同的适应机制。 2004年8月，我们沿青藏公路设置一条从西大滩到羊八井的样带，并进行取样。样带的生态特征从南到北变化较大：海拔从4586m上升到4901m，生长季降水量从384.0cm下降到202.2cm，生长季月均温从5.1℃下降到1.4℃，生长季月均相对湿度从65%，下降到54%，生长季蒸发量从1242cm下降到798cm，生长季月均风速从2.4m/s增大到4.0m/s。将采集的植物叶片材料制成石蜡切片，采用番红固绿对染，在显微镜下观察测量。同时研究了青藏苔草的根茎特征。数据分析中运用了变异系数比较，多重比较，相关分析和回归分析被用来分析结构变化及其与生态因子的关系。 结果表明，两物种的叶片结构特征在不同环境中的种群间存在显著差异。总体上，青藏苔草的保护组织、光合组织以及综合指标变异系数明显大于紫花针茅的，仅输导组织相关指标的变异系数小于紫花针茅的。这些结果表明，在叶片结构水平上青藏苔草比紫花针茅具有较大的可塑性，也意味着青藏苔草对生态因子变化的潜在适应能力可能较紫花针茅强。 紫花针茅和青藏苔草的大部分叶片结构特征与其生存环境的生态因子间存在着线性回归关系：紫花针茅叶肉细胞大小随土壤有效K含量增高而减小;下表皮厚度和韧皮部面积随生长季云盖度增高而增大;单一导管半径和导管平均面积随生长季月均湿度的增加而增大;青藏苔草上表皮细胞厚度随生长季月均最低温的降低而增厚;泡状细胞厚度随大陆度的增强而增加;上表皮细胞大小随土壤pH的增大而增大;导管总数和韧皮部面积随土壤速效P含量的增高而增加;气腔总面积随土壤有效K含量增高而增大。 青藏苔草分枝方式为典型的合轴分枝。分株间由埋藏在地下的匍匐根状茎连接，其扩展方式不呈直线形。青藏苔草喜沙质土，其根茎一般分布在沙土中10cm以下，在部分通气性能良好的风成沙丘或沙地，深度可超过50cm，间隔子长度依生境的不同而变化很大，短的仅约3cm，而长的可达2m多。 青藏苔草的间隔子长度和节间长度随有效温度的增加而减小，根茎每间隔子节间数随降水的增加而减少，在较低有效温度下和较低水分供给的情况下单位面积分布的克隆分株数量较少，在较高有效温度下和较高水分供给的情况下单位面积的克隆分株数量分布较多。这种变化趋势有助于青藏苔草有效迅速地占领条件适合的生境，充分利用生境内的各种资源，扩大种群;在不利条件下，青藏苔草则减少单位面积内克隆分株的分布，以适应不良生境。

古田山大样地木本植物根萌现状及优势种群根萌空间格局分析

　　已有研究表明，萌生现象对森林恢复和植被演替等生态过程中具有及其重要的意义，作为一种可以和种子繁殖“抗衡”的直接的再生方式，森林萌生更新已受到越来越多的关注。近年来萌生生态学的研究主要针对于萌生的生态功能如对个体生活史策略的影响、在植被演替中的作用、对物种多样性影响等方面，研究的切入点大多注重相关的环境因子、遗传因子或自然和人为干扰如砍伐、火烧、大风等引起的萌生现象，针对原始森林演替的研究相对较少，针对“长期动态监测样地”的萌生现象则更少。由于长期动态观测样地具有固定和长期观察的特有优点，这对物种共存、格局及维持机制、植被演替等生物多样性热点问题的研究带来了难得的机遇和条件。 我国是地球上亚热带常绿阔叶林分布面积最广，发育最为典型的区域，我国亚热带常绿阔叶林的生物多样性极高,仅次于热带雨林。目前对亚热带常绿阔叶林物种共存、分布格局、群落演替等的研究相对较少。参照美国史密森热带研究所的热带森林研究中心(Center for tropical forest science，CTFS)森林动态样地的操作规范，中国森林生物多样性研究网络在中国从南到北按主要森林类型建立了5块20～25hm2的森林大样地。作为中国森林生物多样性长期监测网络的重要组成部分，古田山样地分布着典型的中亚热带常绿阔叶林。本论文在24hm2古田山中亚热带常绿阔林长期监测样地调查的基础上，重点从古田山大样地木本植物根萌现状及优势种群根萌空间格局等方面进行具体分析，试图了解古田山大样地根萌植物的种类组成、个体大小、数量、地理区系成分特点等基础特征，同时选择大样地乔灌木层的优势树种，重点分析优势种群根萌的空间分布格局及其特点，以便加深了解优势物种根萌的种内、种间的共存关系，也将对优势植物根萌植物的分布和样地生境的关系作出有益尝试。本文最后通过比较优势物种的主干和根萌空间分布格局等方面的相关性进一步揭示根萌在群落组成中的地位和作用。本研究将为亚热带常绿阔叶林根萌植物的长期动态研究积累基础资料，对了解常绿阔叶林根萌植物现状以及空间分布格局等方面起到积极的探索意义，同时对揭示根萌现象在亚热带常绿阔叶林物种多样性维持机制中的地位和作用也将起到一定的推动作用。

Diatom community succession in the recent history of a eutrophic Yunnan Plateau lake, Lake Dianchi, in subtropical China

Fish introduction, eutrophication and disappearance of aquatic vegetation are important disturbances of aquatic ecosystems, especially in plateau lakes, which are generally considered to be very vulnerable. Fish were introduced to Lake Dianchi, a eutrophic plateau lake in southwest China, in the late 1950s and 1970s. After the introduction, invasive fish became the dominant species, and the total fish yield increased. Meanwhile, the trophic level of Lake Dianchi had a tendency to increase in the past decades because of the increases in human activities in the watershed area. In addition, the area of aquatic vegetation decreased from more than 90 to 1.8% of the lake area from the 1950s to 2000. This study investigated the effects of fish introduction, eutrophication and aquatic vegetation on the diatom community of Lake Dianchi by examining the changes of microfossil diatom assemblage and abundance. Results showed that the absolute abundance and diatom assemblages changed after fish were introduced. The endemic species, Cyclotella rohomboideo-elliptica, disappeared with the introduction of fish and increasing trophic levels after 1958. Fragilaria crotonensis entered into the lake with the introduction of fish and gradually thrived in the lake after 1958. Diatom species numbers also decreased gradually from 21 to 9 from the past to present. Epiphytic diatoms disappeared with the decrease of aquatic vegetation after 1985. Our study indicated that eutrophication was the most important process determining diatom abundance, and fish introduction was a secondary process determining diatom abundance, while aquatic vegetation had a more important role in structuring the diatom community in this eutrophic plateau lake.

Temporal and Spatial Distributions of Rotifers in Xiangxi Bay of the Three Gorges Reservoir, China

From July 2003 to June 2005, investigations of rotifer temporal and spatial distributions were carried out in a bay of the Three Gorges Reservoir, Xiangxi Bay, which is the downstream segment of the Xiangxi River and the nearest bay to the Three Gorges Reservoir dam in Hubei Province, China. Thirteen sampling sites were selected. The results revealed a high species diversity, with 76 species, and 14 dominant species; i.e., Polyarthra vulgaris, Keratella cochlearis, Keratella valga, Synchaeta tremula, Synchaeta stylata, Trichocerca lophoessa, Trichocerca pusilla, Brachionus angularis, Brachionus calyciflorus, Brachionus forficula forficula, Ascomorpha ovalis, Conochilus unicornis, Ploesoma truncatum and Anuraeopsis fissa. After the first year of the reservoir impoundment, the rotifer community was dominated by ten species; one year later it was dominated by eight species. The community in 2003/2004 was dissimilar to that in 2004/2005, which resulted from the succession of the dominant species. The rotifer community exhibited a patchy distribution, with significant heterogeneity observed along the longitudinal axis. All rotifer communities could be divided into three groups, corresponding to the riverine, the transition and the lacustrine zone, respectively.

Ultraviolet-B exposure induces photo-oxidative damage and subsequent repair strategies in a desert cyanobacterium Microcoleus vaginatus Gom.

Biological soil crusts are important in reversing desertification. Ultraviolet radiation, however, may be detrimental for the development of soil crusts. The cyanobacterium Microcoleus vaginatus can be a dominant species occurring in desert soil crusts all over the world. To investigate the physico-chemical consequences of ultraviolet-B radiation on M. vaginatus, eight parameters including the contents of chlorophyll a, reactive oxygen species, malondialdehyde and proline, as well as the activities of photosynthesis, superoxide dismutase (EC 1.15.1.1), peroxiclase (EC 1.11.1.7) and catalase (EC 1.11.1.6) were determined. As shown by the results of determinations, ultraviolet-B radiation caused decreases both in contents of chlorophyll a and in ratios of variable fluorescence over maximum fluorescence that indicate the growth and photosynthesis of M. vaginatus, besides, increases both in levels of reactive oxygen species and in contents of malondialdehyde and proline, while intensified activities of superoxide dismutase, peroxiclase and catalase reflecting the abilities of enzymatic preventive substances to oxidative stress of the treated cells. Therefore, ultraviolet-B radiation affects the growth of M. vaginatus and leads to oxidative stress in cells. Under ultraviolet-B radiation, the treated cells can improve their antioxidant abilities to alleviate oxidative injury. The change trends of reactive oxygen species, superoxide dismutase, peroxiclase and catalase are synchronous. These results suggest that a balance between the antioxidant system and the reactive oxygen species content may be one part of a complex stress response pathway in which multiple environmental factors including ultraviolet-B radiation affect the Survival of M. vaginatus. (C) 2009 Elsevier Masson SAS. All rights reserved.

Communities of gastrointestinal helminths of fish in historically connected habitats: habitat fragmentation effect in a carnivorous catfish Pelteobagrus fulvidraco from seven lakes in flood plain of the Yangtze River, China

Background: Habitat fragmentation may result in the reduction of diversity of parasite communities by affecting population size and dispersal pattern of species. In the flood plain of the Yangtze River in China, many lakes, which were once connected with the river, have become isolated since the 1950s from the river by the construction of dams and sluices, with many larger lakes subdivided into smaller ones by road embankments. These artificial barriers have inevitably obstructed the migration of fish between the river and lakes and also among lakes. In this study, the gastrointestinal helminth communities were investigated in a carnivorous fish, the yellowhead catfish Pelteobagrus fulvidraco, from two connected and five isolated lakes in the flood plain in order to detect the effect of lake fragmentation on the parasite communities. Results: A total of 11 species of helminths were recorded in the stomach and intestine of P. fulvidraco from seven lakes, including two lakes connected with the Yangtze River, i.e. Poyang and Dongting lakes, and five isolated lakes, i.e. Honghu, Liangzi, Tangxun, Niushan and Baoan lakes. Mean helminth individuals and diversity of helminth communities in Honghu and Dongting lakes was lower than in the other five lakes. The nematode Procamallanus fulvidraconis was the dominant species of communities in all the seven lakes. No significant difference in the Shannon-Wiener index was detected between connected lakes (0.48) and isolated lakes (0.50). The similarity of helminth communities between Niushan and Baoan lakes was the highest (0.6708), and the lowest was between Tangxun and Dongting lakes (0.1807). The similarity was low between Dongting and the other lakes, and the similarity decreased with the geographic distance among these lakes. The helminth community in one connected lake, Poyang Lake was clustered with isolated lakes, but the community in Dongting Lake was separated in the tree. Conclusion: The similarity in the helminth communities of this fish in the flood-plain lakes may be attributed to the historical connection of these habitats and to the completion of the life-cycles of this fish as well as the helminth species within the investigated habitats. The diversity and the digenean majority in the helminth communities can be related to the diet of this fish, and to the lacustrine and macrophytic characters of the habitats. The lake isolation from the river had little detectable effect on the helminth communities of the catfish in flood-plain lakes of the Yangtze River. The low similarities in helminth communities between the Dongting Lake and others may just be a reflection of its unique water environment and anthropogenic alterations or fragmentation in this lake.

Actinomycetes and earthy-musty odorous compounds in brackish fishponds in Tianjin, China

The presence of the odorous compounds, 2-methylisoborneol (MIB) and geosmin, as well as causative microorganisms in brackish intensive cultivation fishponds in Tianjin, China that had a severe earthy-musty odor were evaluated. The results revealed that MIB was the primary odorous compound present in the Tianjin fishponds, with a concentration ranging from 0.53-5302.7 ng.L-1. Furthermore, the concentration of MIB was found to be closely correlated with the gross biomass of actinomycetes in the water, which ranged from 10.67-1528.24 x 10(6) cfu.ml(-1). Therefore, the sequences of the 16 SrRNA and morphological characteristics of the actinomycetes in the brackish fishponds were investigated. The results revealed that the actinomycetes in the brackish fishponds included 9 species of common and dominant actinomycetes belonging to 4 genera. Of these genera, Streptomyces were the dominant species, and Streptomyces, Nocardioides and Micromonospora were the most common species in the fishponds evaluated. Next, the ability of each of the isolated Streptomyces to produce MIB was measured under laboratory culture conditions. Streptomyces Sp2 was found to have a strong ability to produce MIB, which indicates that this strain may be the primary source of the earthy-musty odor reported in brackish intensive cultivation fishponds in Tianjin, China.

Spatial distribution of benthic algae in the Gangqu River, Shangrila, China

This study consisted of sampling benthic algae at 32 sites in the Gangqu River, an important upstream tributary of the Yangtze River. Our aims were to characterize the benthic algae communities and relationships with environmental variables. Among the 162 taxa observed, Achnanthes linearis and Achnanthes lanceolata var. elliptica were the dominant species (17.10% and 14.30% of the total relative abundance, respectively). Major gradients and principal patterns of variation within the environmental variables were detected by principal component analysis (PCA). Then non-metric multidimensional scaling (NMS) divided all the sites into three groups, which were validated by multi-response permutation procedures (MRPP). Canonical correspondence analysis (CCA) indicated that three environmental variables (TN, TDS, and TP) significantly affected the distribution of benthic algae. Weighted averaging regression and cross-calibration produced strong models for predicting TN and TDS concentration, which enabled selection of algae taxa as potentially sensitive indicators of certain TN and TDS levels: for TN, Achnanthes lanceolata, Achnanthes lanceolata var. elliptica, and Cymbella ventricosa var. semicircularis; for TDS, Cocconeis placentula, Cymbella alpina var. minuta, and Fragilaria virescens. The present study represents an early step in establishing baseline conditions. Further monitoring is suggested to gain a better understanding of this region.