Studies on three-dimensional quantitative structure-activity relationship of PDE inhibitory activity of imidazopyridines

In recent years there has been a resurgence of interest in inhibitors of cyclic nucleotide phosphodiesterases (PDE) and enzymes responsible for the intracellular hydrolysis of the second messenger cAMP and cGMP. In this study, a series of 2-substituted phenyllimidazo[4,5-b]pyridines have been made to investigate 3D-QSAR of PDE activity using CoMFA. CoMFA resulted in a quantitative description of the major steric and electrostatic field effects, and gave significant new insights to factors governing PDE inhibition activity. The model was used to predict the PDE inhibition activity of imidazopyridines with satisfactory results.

Efficient cleavage of ribonucleoside 3',5'-cyclic phosphates and deoxyribonucleoside 3',5'-cyclic phosphate by lanthanides

The cleavage of 3',5'-cAMP, 3',5'-cGMP and 3',5'-dcAMP by lanthanides has been investigated by HPLC and H-1 NMR. Rapid cleavage of cAMP, cGMP and dcAMP by Ce(III) under air at pH 8 and 37 degrees C has been observed. Regioselective cleavage of P-O(5') bond in cAMP, cGMP and dc;aMP tu give the corresponding 3'-AMP, 3'-GMP and 3'-dAMP by lanthanide chlorides has been achieved, and 3'-AMP and 3'-GMP are cleaved to adenosine(A) and guanosine(CT) more slowly, respectively, The notable difference in reactivity between Ce(III) and the other lanthanide ions under air has also been studied. The cleavage is enhanced with the increase in the molar fraction of Ce(IV). The fast cleavage of cAMP by Ce(III) under air at pH 8 is ascribed to the resultant Ce(IV) in the reaction mixture.

稀土对3’,5’-环腺嘌呤单核苷酸与3’,5’-环鸟嘌呤单核苷酸的快速断裂作用

在温和条件下能快速切断核酸的人工酶有许多重要的潜在应用价值,如作为模拟的限制性内切酶并发展到新的抗癌药物,因此,长期以来人们致力于研究具有高效率及高选择性的人工酶.关于稀土对核酸断裂作用的研究尚不多,而稀土对环核苷酸的催化水解作用只有Sumaoka等曾报道Ce~(3+)对3’,5’-环腺嘌呤单核苷酸(cAMP)有快速的水解作用,稀土对不同环核苷酸的催化水解作用尚未见报道.3’,5’-环腺嘌呤单核苷酸与3’,5’-环鸟嘌呤单核苷酸(cGMP)具有调节细胞应答及细胞间信息传递的作用,且细胞内不同环核苷酸的变化与某些心血管疾病的发病机理有关.本文用高压液相色谱(HPLC)和核磁共振(NMR)研究了稀土对cAMP与cGMP的断裂作用,并深入探索了其机理,这对于寻找高效率及高选择性的核酸催化体系,阐明稀土在生物体内的作用具有重要的意义.

Lineage-specific domain fusion in the evolution of purine nucleotide cyclases in cyanobacteria

Cyclic nucleotides (both cAMP and cGMP) play extremely important roles in cyanobacteria, such as regulating heterocyst formation, respiration, or gliding. Catalyzing the formation of cAMP and cGMP from ATP and GTP is a group of functionally important enzymes named adenylate cyclases and guanylate cyclases, respectively. To understand their evolutionary patterns, in this study, we presented a systematic analysis of all the cyclases in cyanobacterial genomes. We found that different cyanobacteria had various numbers of cyclases in view of their remarkable diversities in genome size and physiology. Most of these cyclases exhibited distinct domain architectures, which implies the versatile functions of cyanobacterial cyclases. Mapping the whole set of cyclase domain architectures from diverse prokaryotic organisms to their phylogenetic tree and detailed phylogenetic analysis of cyclase catalytic domains revealed that lineage-specific domain recruitment appeared to be the most prevailing pattern contributing to the great variability of cyanobacterial cyclase domain architectures. However, other scenarios, such as gene duplication, also occurred during the evolution of cyanobacterial cyclases. Sequence divergence seemed to contribute to the origin of putative guanylate cyclases which were found only in cyanobacteria. In conclusion, the comprehensive survey of cyclases in cyanobacteria provides novel insight into their potential evolutionary mechanisms and further functional implications.

大熊猫RPS15 cDNA的克隆及序列分析

本研究运用RT—PCR技术，首次从大熊描Ailuropoda melanoleucu的肌肉组织总RNA中成功克隆了核糖体蛋白S15（RPS15）基因的表达序列．并对其进行了初步分析。结果表明：大熊猫RPS15基因的表达序列全长为442bp，开放阅读框（ORF）为438bp，编码145个氨基酸，该蛋白的分子量为17．0401KDa，等电点为10．3，含有2个依赖于cAMP和cGMP的蛋白激酶磷酸化位点，5个蛋白激酶C磷酸化位点，4个N-酰基化位点及1个RPS19蛋白signature位点。进一步分析发现，大熊猫RPS15基因的表达序列及其编码的氨基酸序列与已报道的部分哺乳动物具有很高的相似性。