Donut-Shaped Fingerprint In Homologous Polypeptide Relationships-A Topological Feature Related To Pathogenic Structural Changes In Conformational Disease

Features of homologous relationship of proteins can provide us a general picture of protein universe, assist protein design and analysis, and further our comprehension of the evolution of organisms. Here we carried Out a Study of the evolution Of protein molecules by investigating homologous relationships among residue segments. The motive was to identify detailed topological features of homologous relationships for short residue segments in the whole protein universe. Based on the data of a large number of non-redundant Proteins, the universe of non-membrane polypeptide was analyzed by considering both residue mutations and structural conservation. By connecting homologous segments with edges, we obtained a homologous relationship network of the whole universe of short residue segments, which we named the graph of polypeptide relationships (GPR). Since the network is extremely complicated for topological transitions, to obtain an in-depth understanding, only subgraphs composed of vital nodes of the GPR were analyzed. Such analysis of vital subgraphs of the GPR revealed a donut-shaped fingerprint. Utilization of this topological feature revealed the switch sites (where the beginning of exposure Of previously hidden "hot spots" of fibril-forming happens, in consequence a further opportunity for protein aggregation is Provided; 188-202) of the conformational conversion of the normal alpha-helix-rich prion protein PrPC to the beta-sheet-rich PrPSc that is thought to be responsible for a group of fatal neurodegenerative diseases, transmissible spongiform encephalopathies. Efforts in analyzing other proteins related to various conformational diseases are also introduced. (C) 2009 Elsevier Ltd. All rights reserved.

工作记忆广度对语篇理解中重读效应的影响

The present study explored the influence of working memory span on accentuation effects in discourse comprehension from the approach of individual difference. High and low working memory span subjects were selected by Reading Span Test. Sentence-by-sentence Auditory Moving Window paradigm was employed to measure the effects of accentuation on discourse comprehension. The on-line processing time of discourse comprehension was compared between consistent accentuation condition, inconsistent accentuation condition and controlled condition. The results indicated that the accentuation effects were influenced by working memory capacity. For low working memory subjects, consistent accentuation speeded up the on-line processing of spoken discourse, inconsistent accentuation slowed down the on-line processing of spoken discourse. But for high working memory span subjects, neither effect was manifested. The only significant difference was found between the condition of inconsistent accentuation and consistent accentuation. During spoken discourse comprehension, there was no significant difference in the on-line processing time between high and low working memory span subjects in consistent accentuation condition as well as in neutral accentuation condition. However, in the condition of inconsistence accentuation, low span subjects spent significantly more time on the on-line processing of spoken discourse than high span subjects. The results could be explained by the controlled attention view of working memory.