Site-directed PEGylation of trichosanthin retained its anti-HIV activity with reduced potency in vitro

Trichosanthin (TCS) was the first ribosome inactivating protein found to possess anti-HIV-1 activity. Phase I/II clinical trial of this compound had been done. Antigenicity and short plasma half-life were the major side effects preventing further clinical trial. Modification of TCS is therefore necessary to revive the interest to develop this compound as an anti-HIV agent. Three potential antigenic sites (Ser-7, Lys-173, and Gln-219) were identified by computer modeling. Through site-directed mutagenesis, these three antigenic amino acids were mutated to a cysteine residue resulting in 3 TCS mutants, namely S7C, K173C, and Q219C. These mutants were further coupled to polyethylene glycol with a molecular size of 20 kDa (PEG) via the cysteine residue. This produced another three TCS derivatives, namely PEG(20)k-S7C, PEG(20)k-K173C, and PEG(20)k-Q219C. PEGylation had been widely used recently to decrease immunogenicity by masking the antigenic sites and prolong plasma half-life by expanding the molecular size. The in vitro anti-HIV-1 activity of these mutants and derivatives was tested. Results showed that the anti-HIV-1 activity of S7C, K173C, and Q219C was decreased by about 1.5- to 5.5-fold with slightly lower cytotoxicity. On the other hand, PEGylation produced larger decrease (20- to 30-fold) in anti-HIV activity. Cytotoxicity was, however, weakened only slightly by about 3-fold. The in vitro study showed that the anti-HIV activity of PEGylated TCS was retained with reduced potency. The in vivo activity is expected to have only slightly changed due to other beneficial effects like prolonged half-life. (C) 2004 Elsevier Inc. All rights reserved.

Numerical Simulation and Experimental Investigation about Internal and External Flows

In this paper, TASCflow3D is used to solve inner and outer 3D viscous incompressible turbulent flow (R-e = 5.6 X 10(6)) around axisymmetric body with duct. The governing equation is a RANS equation with standard k-epsilon turbulence model. The discrete method used is a finite volume method based on the finite element approach. In this method, the description of geometry is very flexible and at the same time important conservative properties are retained. The multi-block and algebraic multi-grid techniques are used for the convergence acceleration. Agreement between experimental results and calculation is good. It indicates that this novel approach can be used to simulate complex flow such as the interaction between rotor and stator or propulsion systems containing tip clearance and cavitation.

Low Spring Constant Regulates P-Selectin-Psgl-1 Bond Rupture

Forced dissociation of selectin-ligand bonds is crucial to such biological processes as leukocyte recruitment, thrombosis formation, and tumor metastasis. Although the bond rupture has been well known at high loading rate r(f) (>= 10(2) pN/s), defined as the product of spring constant k and retract velocity v, how the low r(f) (< 10(2) pN/s) or the low k regulates the bond dissociation remains unclear. Here an optical trap assay was used to quantify the bond rupture at r(f) <= 20 pN/s with low k (similar to 10(-3)-10(-2) pN/nm) when P-selectin and P-selectin glycoprotein ligand 1 (PSGL-1) were respectively coupled onto two glass microbeads. Our data indicated that the bond rupture force f retained the similar values when r(f) increased up to 20 pN/s. It was also found that f varied with different combinations of k and v even at the same r(f). The most probable force, f

Barium-Functionalized Multiwalled Carbon Nanotube Yarns As Low-Work-Function Thermionic Cathodes

Barium-functionalized multiwalled carbon nanotube yarns were fabricated by drawing and twisting multiwalled carbon nanotube forests through a solution containing barium nitrate. After heat activation under vacuum, the functionalized yarns were enriched in barium oxide due to the high surface-to-volume ratio of the nanotubes. The cathodes exhibited good thermionic properties, with a work function as low as 1.73-2.06 eV and thermionic current density that exceeded 185 mA/cm(2) in a field of 850 V/5 mm at 1317 K. The barium-functionalized yarns had high tensile strength of up to 420 MPa and retained strength of similar to 250 MPa after a 2 h activation process. (C) 2008 American Institute of Physics.

Magnetic properties of sintered sm2fe17ny magnets

Sintered magnets of Sm2Fe17Ny nitrides, with a density of 6.0-7.4 g/cm3, have been prepared by using an explosion technique. Both crystalline structure and the magnetic properties of Sm2Fe17Ny nitrides were retained in the process. The sintered magnet had a remanence B(r)=0.83 T, an intrinsic coercivity mu(0i)H(c)=0.57 T and an energy product (BH)max=88 kJ/m3. The temperature dependence of coercivity and remanence were also measured. The temperature coefficients alpha of remanence and beta of coercivity are -0.076%/degrees-C and -0.51%/degrees-C, respectively.

Numerical Simulation and Experimental Investigation about Internal and External Flows

In this paper, TASCflow3D is used to solve inner and outer 3D viscous incompressible turbulent flow (R-e = 5.6 X 10(6)) around axisymmetric body with duct. The governing equation is a RANS equation with standard k-epsilon turbulence model. The discrete method used is a finite volume method based on the finite element approach. In this method, the description of geometry is very flexible and at the same time important conservative properties are retained. The multi-block and algebraic multi-grid techniques are used for the convergence acceleration. Agreement between experimental results and calculation is good. It indicates that this novel approach can be used to simulate complex flow such as the interaction between rotor and stator or propulsion systems containing tip clearance and cavitation.

Microstructure Evolution of Laser Pulse processed Ductile Iron Surface

Pulsed laser beam was used to modify surface processing for ductile iron. The microstructures of processed specimen were observed using optical microscope (OM). Nanoindentation and micro-hardness of microstructures were measured from surface to inner of sample. The experimental results show that, modification zone is consisted of light melted zone, phase transformation hardening area and transient area. The light melt area is made up of coarse dendrite crystalline with a thickness less than 20um, phase transformation hardening area mainly of laminal or acicular martensite, retained austenite and graphite, i.e. M+A prime+ G. The cow-eye microstructure around graphite sphere always is formed in phase transformation hardening area zone, which consisting of a variety structure with the distance from the surface. So, it maybe as a obvious sign distinguishing modification zone border. Finally, the microstructures evolution of laser pulse processed ductile iron was analyzed coupling with beam energy distribution in space and laser pulse heating procession characteristics. The analysis shows that energy distribution of laser pulse has an important effect on microstructure during laser pulse modified ductile iron. Multi-scale and interlace arrangement are the important features for laser pulse modified ductile iron. Of microstructure.

土壤有机碳和氮的分布及其对气候变化的响应

碳、氮不仅是生物体必需的营养元素，也是重要的生态元素。大气中温室气体C02、N2O等浓度的增加使得碳、氮的生物地球化学循环及其温室气体的减缓排放措施研究成为全球变化研究中的热点问题。 土壤是陆地生态系统的核心，是连接大气圈、水圈、生物圈、岩石圈的纽带;它是陆生生物赖以生存的物质基础，是陆地生态系统中物质与能量交换的重要场所，其在全球碳、氮循环中起着十分重要的作用。一方面，土壤有机碳和氮的含量与分布直接关系到生态系统的生产力和生态系统的规模，同时土壤有机碳和氮的转化与迁移又直接影响到温室气体的组成与含量。而土壤本身又是生态系统中生物与环境相互作用的产物。因此，研究土壤有机碳和氮的分布、转化及其对全球变化的响应对于正确理解碳、氮的生物地球化学循环及其对全球变化的响应制定应对策略具有重要意义。 全球变化的陆地样带是从机理上理解陆地生态系统对全球变化的响应，预测全球变化对陆地生态系统的可能影响，实现预警、调节和减少全球变化不良影响，科学地规划和管理陆地生态系统的有效平台。目前，国际地圈一生物圈计划(IGBP)基于不同地区全球变化驱动因素的不同以及全球变化的潜在反馈作用强度的不同，在全球4个关键地区共启动了15条IG8P陆地样带。以水分为主要驱动力的中国东北样带(NECT：Northeast China Transect)即为IGBP的陆地样带之一。 本文以中国东北样带为平台，基于2001年对中国东北样带科学考察所采土壤样品的实测结果和气候资料分析了土壤有机碳和氮的梯度分布及其与土壤、气候等因子之间的关系;借助C02浓度升高和不同土壤湿度的模拟试验探讨了土壤有机碳和氮对气候变化的响应;根据作物残体还田的长期定位试验和盆栽试验研究了作物残体还田对土壤有机碳和氮转化的影响，讨论了农田生态系统通过作物残体还田对减缓温室气体排放的效应。主要结果和结论如下： (1).样带表层土壤有机碳平均为22.3土4.93 g．kg-1，下层土壤有机碳平均为8.9±1.20 g．kg-1。样带表层土壤活性有机碳平均为3.52±0.881 g.kg-1，占表层土壤有机碳的13.1±0.78%;下层土壤活性有机碳平均为1.14±0.250g.kg-l，占下层土壤有机碳的10.9±0.79%。样带土壤活性有机碳与土壤有机碳之间呈极显著正相关关系(相关系数r=0.993，P<0.001)。 (2).不同生态类型土壤有机碳和活性有机碳含量不同。中国东北样带东部(经度126°～131°)为温带针阔混交林山地，植被种类极其丰富，地带性土壤为暗棕壤，并且多为自然土壤，土壤有机碳和活性有机碳含量较高。但由于采样区局部地理环境、植被结构及人类干扰程度的不同，土壤有机碳和活性有机碳含量变异较大，平均为61.9±13.84 g．kg-1和10. 88±2.236g. kg-1。样带中部（经度119°～126°）为松辽平原栎林草原、农田区和大兴安岭山地草甸草原区，属半湿润向半干旱过渡的气候。该区域主要土壤类型为黑土、黑钙土、盐化或碱化草甸土及风沙土，土壤沙化、碱化严重，土壤有机碳和活性有机碳含量明显降低，平均为10.5±1.97 g．kg-l和1. 35±0.327 g．kg-1。样带中西部（经度113°～119°）为内蒙古高原草甸草原和典型草原区域，具有典型的半干旱气候特征。该区地带性土壤为栗钙土，局部丘陵区分布黑钙土，土壤有机碳和活性有机碳含量为14.6±1.65 g．kg-1和2.07±0.342g.kg-1。样带西部（经度111°～113°）为内蒙古高原荒漠草原区域，地带性土壤为棕钙土，土壤较为贫瘠，其有机碳和活性有机碳含量最低，平均为7.99±1.51 g．kg-1和0.51±0.216 g．kg-1。从总的趋势看，样带表层土壤有机碳和活性有机碳的梯度分布趋势一致，都呈现出随经度降低而下降的趋势，局部因土壤退化而出现波动。 (3).样带土壤有机碳和活性有机碳与土壤全量氮、磷、硫、锌及有效氮、磷、钾、锰、锌等均呈显著或极显著相关关系，与土壤PH、容重、持水量及孔隙度也呈显著或极显著相关关系。土壤表层有机碳和活性有机碳与降水量之间具有正的相关关系，其相关系数为r=0.677（P<0.001）和r=0.712（P<0.001）。但下层土壤有机碳和活性有机碳与降水量之间没有显著的相关关系。 (4).样带下层土壤有机碳和活性有机碳与经度之间仍具有显著的相关关系（r=0.454，P=0.026; r=0.473，P=0.020）。样带下层土壤有机碳和活性有机碳的变异小于表层。不同的生态系统，下层土壤有机碳和活性有机碳与表层土壤有机碳和活性有机碳的比率不同。总的来看，土壤活性有机碳含量随深度的增加而下降的幅度大于土壤有机碳。 (5).短期培养条件下，CO2浓度升高及干旱胁迫下，土壤有机碳的变化不大，其变异系数为1.28%;相比较之下，土壤活性有机碳对气候变化比较敏感，其变异系数为29.67%。不同土壤湿度，土壤活性有机碳含量发生变异的幅度因CO2浓度升高而降低。 (6).样带土壤全氮和有效氮与经度呈极显著正相关，其相关系数分别是r=0.695 (P<0.001)和0.636(P<0.001)。土壤表层全氮和有效氮的梯度分布与土壤有机碳的分布基本一致：沿经度呈现东高西低的趋势，局部由于土壤退化而出现低谷。样带除东部山区外，其它各部分土壤有效氮都很低，成为其植被生长的限制因子之一。样带下层土壤全氮和有效氮的含量低于表层，但样带不同部位下层土壤全氮和有效氮下降的幅度不同。总的来看，土壤全氮的剖面分布和土壤有机碳相似，而土壤有效氮则有所不同。 (7).土壤全氮和有效氮是土壤生化环境中两个重要的因子。样带土壤全氮和有效氮和土壤有机碳、全磷、全硫、全锌、土壤活性碳、有效磷、有效钾、有效锰、有效锌、土壤容重、田间持水量土壤总孔度等因子均呈显著或极显著的相关关系。 (8).样带表层土壤全氮和有效氮与降雨量之间呈极显著的正相关关系，相关系数分别是0.682(P<0.001)和0.688(P<0.001)。而下层土壤全氮和有效氮与降雨量之间的没有显著的相关关系（r=0.241，P=0.256; r=0.366，P=0.079）。土壤有效氮占全氮的比例与年均温呈显著正相关关系（相关系数r=0.390，p=0.044）。 (9).短期培养试验中，CO2浓度加倍和不同土壤湿度对土壤全氮和有效氮的影响没有达到显著水平。整个试验中土壤全氮和有效氮的变异较小（变异系数分别是5.55%和3.84%），但仍能反映一定的变化趋势。 (10)．玉米残体还田能够增加土壤氮素含量，减轻因其作为燃烧材料而造成的氮素损失和对大气的污染;玉米残体施入土壤，增加了土壤微生物氮含量，提高土壤氮活性，有利于土壤氮素养分的协调供应;玉米残体还田能够促进氮素从营养器官向籽粒中转移，提高氮素养分的利用效率。同时，玉米残体还田可以降低土壤NO3--N的累 积，减少肥料氮的损失4.7～5.6%。 (ll)．根据国内外文献和我们连续10年作物残体还田的肥料长期定位试验及盆栽试验结果，从减缓CO2排放、增加土壤碳固存、提高土壤生产力入手，分析了农业生态系统作物残体还田的必要性与可行性，讨论了农田作物残体还田，增加土壤碳固存对于减缓CO2排放、提高土壤生产力的作用与意义。提倡作物残体因地制宜地归还土壤，但作物残体还田后土壤固存与减缓温室气体排放的潜力还需要进一步进行研究。

Comparative molecular cytogenetic studies in the order Carnivora: mapping chromosomal rearrangements onto the phylogenetic tree

We have made a set of chromosome-specific painting probes for the American mink by degenerate oligonucleotide primed-PCR (DOP-PCR) amplification of flow-sorted chromosomes. The painting probes were used to delimit homologous chromosomal segments among human, red fox, dog, cat and eight species of the family Mustelidae, including the European mink, steppe and forest polecats, least weasel, mountain weasel, Japanese sable, striped polecat, and badger. Based on the results of chromosome painting and G-banding, comparative maps between these species have been established. The integrated map demonstrates a high level of karyotype conservation among mustelid species. Comparative analysis of the conserved chromosomal segments among mustelids and outgroup species revealed 18 putative ancestral autosomal segments that probably represent the ancestral chromosomes, or chromosome arms, in the karyotype of the most recent ancestor of the family Mustelidae. The proposed 2n = 38 ancestral Mustelidae karyotype appears to have been retained in some modern mustelids, e.g., Martes, Lutra, ktonyx, and Vormela. The derivation of the mustelid karyotypes from the putative ancestral state resulted from centric fusions, fissions, the addition of heterochromatic arms, and occasional pericentric inversions. Our results confirm many of the evolutionary conclusions suggested by other data and strengthen the topology of the carnivore phylogenetic tree through the inclusion of genome-wide chromosome rearrangements. Copyright (C) 2002 S. KargerAG, Basel.

Cross-species chromosome painting in the Perissodactyla: delimitation of homologous regions in Burchell's zebra (Equus burchellii) and the white (Ceratotherium simum) and black rhinoceros (Diceros bicornis)

Conserved chromosomal segments in the black rhinoceros, Diceros bicornis (DB1, 2n = 84), and its African sister-species the white rhinoceros, Ceratotherim simum (CSI, 2n = 82), were detected using Burchell's zebra (Equus burchellii, EBU, 2n = 44) chromosome-specific painting probes supplemented by a subset of those developed for the horse (Equus caballus, ECA, 2n = 64). In total 41 and 42 conserved autosomal segments were identified in C simum and D. bicornis respectively. Only 21 rearrangements (20 fissions and I fusion) are necessary to convert the Burchell's zebra karyotype into that of the white rhinoceros. One fission distinguishes the D. bicornis and C simum karyotypes which, excluding hetero- chromatic differences, are identical in all respects at this level of resolution. Most Burchell's zebra chromosomes correspond to two rhinoceros chromosomes although in four instances (EBU 18, 19, 20 and 21) whole chromosome synteny has been retained among these species. In contrast, one rhinoceros chromosome (DBI1, CSI1) comprises two separate Burchell's zebra chromosomes (EBU11 and EBU17). In spite of the high diploid numbers of the two rhinoceros species their karyotypes are surprisingly conserved offering a glimpse of the putative ancestral perissodactyl condition and a broader understanding of genome organization in mammals. Copyright (C) 2003 S. Karger AG, Base

Avian comparative genomics: reciprocal chromosome painting between domestic chicken (Gallus gallus) and the stone curlew (Burhinus oedicnemus, Charadriiformes) - An atypical species with low diploid number

The chicken is the most extensively studied species in birds and thus constitutes an ideal reference for comparative genomics in birds. Comparative cytogenetic studies indicate that the chicken has retained many chromosome characters of the ancestral avia

Stepwise loss of motilin and its specific receptor genes in rodents

Specific interactions among biomolecules drive virtually all cellular functions and underlie phenotypic complexity and diversity. Biomolecules are not isolated particles, but are elements of integrated interaction networks, and play their roles through specific interactions. Simultaneous emergence or loss of multiple interacting partners is unlikely. If one of the interacting partners is lost, then what are the evolutionary consequences for the retained partner? Taking advantages of the availability of the large number of mammalian genome sequences and knowledge of phylogenetic relationships of the species, we examined the evolutionary fate of the motilin (MLN) hormone gene, after the pseudogenization of its specific receptor, MLN receptor (MLNR), on the rodent lineage. We speculate that the MLNR gene became a pseudogene before the divergence of the squirrel and other rodents about 75 mya. The evolutionary consequences for the MLN gene were diverse. While an intact open reading frame for the MLN gene, which appears functional, was preserved in the kangaroo rat, the MLN gene became inactivated independently on the lineages leading to the guinea pig and the common ancestor of the mouse and rat. Gain and loss of specific interactions among biomolecules through the birth and death of genes for biomolecules point to a general evolutionary dynamic: gene birth and death are widespread phenomena in genome evolution, at the genetic level; thus, once mutations arise, a stepwise process of elaboration and optimization ensues, which gradually integrates and orders mutations into a coherent pattern.

Anti-HIV-1 property of trichosanthin correlates with its ribosome inactivating activity

Trichosanthin (TCS) is a type I ribosome inactivating (RI) protein possessing anti-tumor and antiviral activity, including human immunodeficiency virus (HIV). The mechanism of these actions is not entirely clear, but is generally attributed to its RI property. In order to study the relationship between the anti-HIV-1 activity of TCS and its RI activity, three TCS mutants with different RI activities were constructed by using site-directed mutagenesis. The anti-HIV-1 activities of the three mutants were tested in vitro. Results showed that two TCS mutants, namely TCSM((120-123)), TCSE160A/E189A, with the greatest decrease in RI activity, lost almost all of the anti-HIV activity and cytopathic effect. Another mutant TCSR122G, which exhibited a 160-fold decrease in RI activity, retained some anti-HIV activity. The results from this study suggested that RI activity of TCS may have significant contribution to its anti-HIV-1 property. (C) 2002 Published by Elsevier Science B.V. on behalf of the Federation of European Biochemical Societies.

Independency of anti-HIV-1 activity from ribosome-inactivating activity of trichosanthin

Trichosanthin (TCS) is a type I ribosome-inactivating (RI) protein possessing multiple biological and pharmacological activities. Its major action is inhibition of human immunodeficiency virus (HIV) replication but the mechanism is still elusive. All evidences showed that this action is related to its RI activity. Previous studies found that TCS mutants with reduced RI activity simultaneously lost some anti-HIV activity. In this study, an exception was demonstrated by two TCS mutants retaining almost all RI activity but were devoid of anti-HIV-1 activity. Five mutants were constructed by using site-directed mutagenesis with either deletion or addition of amino acids to the C-terminal sequence. Results showed that the RI activity of mutants with C-terminal deletion mutants (TCSC2, TCSC4, and TCSC14) decreased by 1.2-3.3-fold with parallel downshifting of its anti-HIV-1 activity (1.4-4.8-fold). Another two mutants, TCSC19aa and TCSKDEL having 19 amino acid extension and a KDEL signal sequence added to the C-terminal sequence, retained all RI activity but subsequently lost most of the anti-HIV-1 activity. These findings suggested that ribosome inactivation alone might not be adequate to explain the anti-HIV action of TCS. (C) 2003 Elsevier Science (USA). All rights reserved.

New insights into the karyotypic relationships of Chinese muntjac (Muntiacus reevesi), forest musk deer (Moschus berezovskii) and gayal (Bos frontalis)

To investigate the karyotypic relationships between Chinese muntjac (Muntiacus reevesi), forest musk deer (Moschus berezovskii) and gayal (Bos frontalis), a complete set of Chinese muntjac chromosome-specific painting probes has been assigned to G-banded chromosomes of these three species. Sixteen autosomal probes (i.e. 6-10, 12-22) of the Chinese muntjac each delineated one pair of conserved segments in the forest musk deer and gayal, respectively. The remaining six autosomal probes (1-5, and 11) each delineated two to five pairs of conserved segments. In total, the 22 autosomal painting probes of Chinese muntjac delineated 33 and 34 conserved chromosomal segments in the genomes of forest musk deer and gayal, respectively. The combined analysis of comparative chromosome painting and G-band comparison reveals that most interspecific homologous segments show a high degree of conservation in G-banding patterns. Eleven chromosome fissions and five chromosome fusions differentiate the karyotypes of Chinese muntjac and forest musk deer; twelve chromosome fissions and six fusions are required to convert the Chinese muntjac karyotype to that of gayal; one chromosome fission and one fusion separate the forest musk deer and gayal. The musk deer has retained a highly conserved karyotype that closely resembles the proposed ancestral pecoran karyotype but shares none of the rearrangements characteristic for the Cervidae and Bovidae. Our results substantiate that chromosomes 1-5 and 11 of Chinese muntjac originated through exclusive centromere-to-telomere fusions of ancestral acrocentric chromosomes. Copyright (C) 2005 S. Karger AG, Basel.