A combined statistical model for multiple motifs search

Transcription factor binding sites (TFBS) play key roles in genebior 6.8 wavelet expression and regulation. They are short sequence segments with de¯nite structure and can be recognized by the corresponding transcription factors correctly. From the viewpoint of statistics, the candidates of TFBS should be quite di®erent from the segments that are randomly combined together by nucleotide. This paper proposes a combined statistical model for ¯nding over- represented short sequence segments in di®erent kinds of data set. While the over-represented short sequence segment is described by position weight matrix, the nucleotide distribution at most sites of the segment should be far from the background nucleotide distribution. The central idea of this approach is to search for such kind of signals. This algorithm is tested on 3 data sets, including binding sites data set of cyclic AMP receptor protein in E.coli, PlantProm DB which is a non-redundant collection of proximal promoter sequences from di®erent species, collection of the intergenic sequences of the whole genome of E.Coli. Even though the complexity of these three data sets is quite di®erent, the results show that this model is rather general and sensible.

Catalytic Cracking and Heat Sink Capacity of Aviation Kerosene Under Supercritical Conditions

Catalytic cracking of China no. 3 aviation kerosene using a zeolite catalyst was investigated under supercritical conditions. A three-stage heating/cracking system was specially designed to be capable of heating 0.8 kg kerosene to a temperature of 1050 K and pressure of 7.0 MPa with maximum mass flow rate of 80 g/s. Sonic nozzles of different diameters were used to calibrate and monitor the mass flow rate of the cracked fuel mixture. With proper experiment arrangements, the mass flow rate per unit throat area of the cracked fuel mixture was found to well correlate with the extent of fuel conversion. The gaseous products obtained from fuel cracking under different conditions were also analyzed using gas chromatography. Composition analysis showed that the average molecular weight of the resulting gaseous products and the fuel mass conversion percentage were a strong function of the fuel temperature and were only slightly affected by the fuel pressure. The fuel conversion was also shown to depend on the fuel residence time in the reactor, as expected. Furthermore, the heat sink levels due to sensible heating and endothermic cracking were determined and compared at varying test conditions. It was found that at a fuel temperature of similar to 1050 K, the total heat sink reached similar to 3.4 MJ/kg, in which chemical heat sink accounted for similar to 1.5 MJ/kg.

Beam combination of a radial laser array: Flat-topped beam

An analytical expression of a radial laser array for flat-topped beam is derived based on the generalized Collins formula. The intensity distribution of the resulting beam focused by a lens at the focus plane, for phase-locked and nonphase-locked cases, is studied numerically. The effect of the Fresnel number and normalized radius on intensity distribution for phase-locked and nonphase-locked cases is also presented. It is found that intensity distribution for nonphase-locked case is much less sensible to the Fresnel number and normalized radius than that of phase-locked case. (C) 2008 Elsevier Ltd. All rights reserved.

玉米农田水热碳通量动态及其环境控制机理研究

陆地生态系统与大气之间的水热碳交换是物质、能量循环的关键过程，一直以来都为研究者们所关注。进入20 世纪以来，特别是随着人们对全球气候变暖的逐步认识，气候变化对水热碳交换过程的影响及其对气候变化的响应研究更加备受关注。本研究以2004~2006 年近三年的涡度相关系统连续观测数据为依托，分析了雨养玉米农田水热碳通量的动态及其影响因子。研究表明，玉米农田水热通量(WHF) 呈显著的单峰型日变化， 日最大值出现在正午12:00~13:00，WHF 变化同步。潜热通量(LE)的季节变化规律与日变化相似，冬季小夏季大，年最大值与最小值分别出现在7 月和1 月。显热通量(Hs) 季节变化也呈单峰型，但年最大值出现在5 月，这主要与降水以及作物生长有关。半小时尺度上，WHF 主要受辐射控制，而日峰值受辐射峰值以及植被生长的双重影响；日尺度上，只要有降水过程，Hs 就会随土壤水分的增大而减小，降水停止后逐渐恢复。而降水对LE 的影响受到可用能量(AE)的干扰，表现出复杂的变化趋势。总的来说，降水持续时间越长AE 越少，对LE 的抑制越大；季节尺度上，WHF 受热量与水分的双重制约。Hs 随着天气回暖后第一次较大降水过程的出现呈现明显下降，而LE 则呈现相反的变化趋势。随着雨季到来和作物的生长，Hs 在7 月出现低谷，而LE 呈现相反的趋势随着降水量的增加而增大；年际间WHF 的分布规律大体一致，但因气象条件等的差异，特别是降水的差异造成年际间WHF 略有不同。在不同水文年型下，水分因子的影响作用有显著差异，且WHF 对热量与水分条件变化的敏感程度也不相同。欠水年，水分因子的作用更显著，是制约WHF 变化的主要控制因子，WHF 对水分的变化更敏感；而丰水年，水分因子的影响减弱，热量的盈亏决定着WHF 变化的主要方向。在不同水文年型下，水热碳通量对水热条件的变化表现出不同的响应方式，为研究生态系统对气候变化的响应提供了参考。 净碳(C)吸收期，玉米农田净碳交换(NEE)呈显著的日变化，在日出以后由CO2 释放转变为CO2 吸收，12:30 左右达到一天中的吸收峰值，日落前出现相反的转换。而净C 释放期内，NEE 均为正值且无明显日变化。NEE 季节变化也呈单峰型二次曲线，在7 月下旬或8 月上旬达到年最大吸收率。根据NEE 的正负，一年分为三个阶段：两个C 排放期与一个C 吸收期。一般C 吸收期从6月开始到9 月结束，此前此后均为C 排放期。在半小时、日时间尺度上，光通量密度(PPFD)与NEE 有着相似的变化规律，是控制NEE 的主要因子；在日、季节尺度上，叶面积指数(LAI)和气孔导度(gs)是影响NEE 的主要生物因子，且gs 的影响程度随着发育期的变化而变化，而不同年份间LAI 对NEE 的影响没有显著的差异。几乎在所有时间步长上，土壤温度(Ts)均为生态系统呼吸(Re)的主要控制因子，时间尺度愈短，二者的相关性愈好。总的来说，在较短时间尺度上，高PPFD 与夏季低温将会促进C 的吸收，有利于C 累积。 玉米农田日最大净C 吸收速率(NEEmax, daily)以及吸收释放转换点(NEE=0)均受PPFD 控制。NEEmax, daily 出现时间与PPFDmax, daily 出现时间几乎完全一致，当PPFD 达到1 日内极大值时，净C 吸收也相应达到了日最大值。但NEEmax, daily的量值还受到其它因子的影响。当水分条件充足时，还将受到LAI、gs 等生物因子的控制。NEE 由正转为负的转换点也是由PPFD 决定。当PPFD 稳定大于PPFD*( PPFD*=100 μmol•m-2s -1)时，净C 吸收开始；当PPFD 稳定小于PPFD*时，净C 吸收由此结束。1 日内，PPFD 稳定通过PPFD*之间的时间间隔决定了日净C 吸收的时间长度。日净C 吸收的时间越长，吸收量也越大，且有明显的季节变化，7 月最长9 月最短。 按照热量水分状况将三年分组，分为I 组(水分状况相似，热量条件不同)与II 组(热量条件相似，水分状况不同)。 I 组年际间PPFD 波动是造成C 交换格局变化的关键原因。而II 组年际间C 交换格局不同是由降水量及其不同分布引起的土壤含水量(SWC)变化是造成。SWC 可以解释年际间NEE 变异的97%，而大气水汽压亏缺(VPD)可以解释30.7%；温度因子通过影响C 收支中的呼吸项，间接影响着生态系统的NEE，它可以解释年际间NEE 变异的73.9%，也是造成年际间C 交换格局不同的原因之一；另外，PPFD 和发育期早晚以及净C吸收期长度等也同样影响着C 交换格局的变化。综合两组情况来看，由水分条件年际变化引起的NEE 的波动大于能量年际变化引起的波动。总之，在较长时间尺度上，NEE 对SWC 变化比其对PPFD 变化更敏感，说明在半干旱地区土壤水分条件仍然是决定C 交换格局的主导因子。 NEE 与LE 呈线性相关，它们之间的相关性主要受温度和NEE 的控制，温度越高，二者的相关性越弱，而NEE 越大二者相关性越好。同时，作物蒸腾与土壤蒸发的比例也是影响NEE 与LE 之间关系的主要因素。蒸腾作用所占的比例越大，二者的线性关系越显著，而土壤蒸发比例越大，二者的相关性越弱。总的来说，NEE 与LE 之间的线性关系有明显的季节变化，生长季好于非生长季，夏天好于冬天。 总之，雨养玉米农田水热碳通量既具有其它农田生态系统共有的动态特征，也具有其特有特征。

Studies on the toxic effects of La3+ to Tetrahymena thermophila by microcalorimetry

The toxic effects of La3+ on Tetrahymena thermophila have been studied by microcalorimetry at 28 degrees C. The metabolic rate constant (r) and peak time were linked to the concentration of La3+. The changes of metabolic rate constant indicated that low-concentration La3+ (0-75 mg/L) had no significant effects on the metabolism of Tetrahymena cells but high-concentration La3+ (100-175 mg/L) could inhibit their metabolism. From the results obtained by cell counting and fluorescence depolarization measurements, the inhibition of metabolism resulted from the decrease in cell number and the reduction in cell membrane fluidity. According to the results, it is clear that the metabolic mechanism of Tetrahymena cells has been changed with the addition of high-concentration La3+. In addition, microcalorimetry of Tetrahymena could be a sensible, easy-to-use, and convenient method for monitoring the potential effects of rare earth elements on cells and the freshwater ecosystem.

Effects of ytterbium ion on the growth, metabolism and membrane fluidity of Tetrahymena thermophila

Power-time curves and metabolic properties of Tetrahymena thermophila BF5 exposed to different Yb3+ stop levels were studied by ampoule method of isothermal calorimetry at 28 degrees C. Metabolic rate (r) decreased significantly while peak time (PT) increased with the increase of Yb3+ stop. These results were mainly due to the inhibition of cell growth, which corresponded to the decrease of cell number obtained by cell counting. Compared with cell counting, calorimetry was sensible, easy to use and convenient for monitoring the toxic effects of Yb3+ stop on cells and freshwater ecosystem. It was also found that cell membrane fluidity decreased significantly under the effects of Yb3+ stop, which indicated that Yb3+ could be membrane active molecules with its effect on cell membranes as fundamental aspect of its toxicity.

Validating MODIS-derived land surface evapotranspiration with in situ measurements at two AmeriFlux sites in a semiarid region

Reducing uncertainties in the estimation of land surface evapotranspiration (ET) from remote-sensing data is essential to better understand earth-atmosphere interactions. This paper demonstrates the applicability of temperature-vegetation index triangle (T-s-VI) method in estimating regional ET and evaporative fraction (EF, defined as the ratio of latent heat flux to surface available energy) from MODIS/Terra and MODIS/Aqua products in a semiarid region. We have compared the satellite-based estimates of ET and EF with eddy covariance measurements made over 4 years at two semiarid grassland sites: Audubon Ranch (AR) and Kendall Grassland (KG). The lack of closure in the eddy covariance measured surface energy components is shown to be more serious at MODIS/Aqua overpass time than that at MODIS/Terra overpass time for both AR and KG sites. The T-s-VI-derived EF could reproduce in situ EF reasonably well with BIAS and root-mean-square difference (RMSD) of less than 0.07 and 0.13, respectively. Surface net radiation has been shown to be systematically overestimated by as large as about 60 W/m(2). Satisfactory validation results of the T-s-VI-derived sensible and latent heat fluxes have been obtained with RMSD within 54 W/m(2). The simplicity and yet easy use of the T-s-VI triangle method show a great potential in estimating regional ET with highly acceptable accuracy that is of critical significance in better understanding water and energy budgets on the Earth. Nevertheless, more validation work should be carried out over various climatic regions and under other different land use/land cover conditions in the future.

Neural network retrieval of ocean surface parameters from SSM/I data

A new algorithm based on the multiparameter neural network is proposed to retrieve wind speed (WS), sea surface temperature (SST), sea surface air temperature, and relative humidity ( RH) simultaneously over the global oceans from Special Sensor Microwave Imager (SSM/I) observations. The retrieved geophysical parameters are used to estimate the surface latent heat flux and sensible heat flux using a bulk method over the global oceans. The neural network is trained and validated with the matchups of SSM/I overpasses and National Data Buoy Center buoys under both clear and cloudy weather conditions. In addition, the data acquired by the 85.5-GHz channels of SSM/I are used as the input variables of the neural network to improve its performance. The root-mean-square (rms) errors between the estimated WS, SST, sea surface air temperature, and RH from SSM/I observations and the buoy measurements are 1.48 m s(-1), 1.54 degrees C, 1.47 degrees C, and 7.85, respectively. The rms errors between the estimated latent and sensible heat fluxes from SSM/I observations and the Xisha Island ( in the South China Sea) measurements are 3.21 and 30.54 W m(-2), whereas those between the SSM/ I estimates and the buoy data are 4.9 and 37.85 W m(-2), respectively. Both of these errors ( those for WS, SST, and sea surface air temperature, in particular) are smaller than those by previous retrieval algorithms of SSM/ I observations over the global oceans. Unlike previous methods, the present algorithm is capable of producing near-real-time estimates of surface latent and sensible heat fluxes for the global oceans from SSM/I data.

Surface energy partitioning in alpine swamp meadow in the Qinghai Tibetan Plateau

Based on surface energy flux data measured by eddy covariance methods from China Flux in alpine swamp meadow of the Qinghai Tibetan Plateau in 2005, the daily and seasonal dynamic of surface energy fluxes and their partitioning, as well as abiotic factors effects were analyzed. The results suggested that LE （Latent heat flux） was the largest consumer of the incoming energy. Rn （Net radiation flux） and LE showed clear seasonal variations in sharp hump and up to their maximums in August and July, respectively. H （Sensible heat flux） increased to its peak in August whereafter declined slowly. Precipitation could reduce the components of surface energy. As to Rn and LE, their correlations with abiotic factors were evident while it was not significant in H. Average EBR （Energy balance ratio） was 50.7 %, which was much larger in growing season than non-growing season.

Monitoring and simulation of water, heat,and CO2 fluxes in terrestrial ecosystems based on the APEIS-FLUX system

The Integrated Environmental Monitoring (IEM) project, part of the Asia-Pacific Environmental Innovation Strategy (APEIS) project, developed an integrated environmental monitoring system that can be used to detect, monitor, and assess environmental disasters, degradation, and their impacts in the Asia-Pacific region. The system primarily employs data from the moderate resolution imaging spectrometer (MODIS) sensor on the Earth Observation System- (EOS-) Terra/Aqua satellite,as well as those from ground observations at five sites in different ecological systems in China. From the preliminary data analysis on both annual and daily variations of water, heat and CO2 fluxes, we can confirm that this system basically has been working well. The results show that both latent flux and CO2 flux are much greater in the crop field than those in the grassland and the saline desert, whereas the sensible heat flux shows the opposite trend. Different data products from MODIS have very different correspondence, e.g. MODIS-derived land surface temperature has a close correlation with measured ones, but LAI and NPP are quite different from ground measurements, which suggests that the algorithms used to process MODIS data need to be revised by using the local dataset. We are now using the APEIS-FLUX data to develop an integrated model, which can simulate the regional water,heat, and carbon fluxes. Finally, we are expected to use this model to develop more precise high-order MODIS products in Asia-Pacific region.

CO2H2O and energy exchange of an Inner Mongolia steppe ecosystem during a dry and wet year

We used an eddy covariance technique to measure evapotranspiration and carbon flux over two very different growing seasons for a typical steppe on the Inner Mongolia Plateau, China. The rainfall during the 2004 growing season (344.7 mm) was close to the annual average (350.43 mm). In contrast, precipitation during the 2005 growing season was significantly lower than average (only 126 mm). The wet 2004 growing season had a higher peak evapotranspiration (4 mm day(-1)) than did the dry 2005 growing season (3.3 mm day(-1)). In 2004, latent heat flux was mainly a consumption resource for net radiation, accounting for similar to 46% of net radiation. However, sensible heat flux dominated the energy budget over the whole growing season in 2005, accounting for 60% of net radiation. The evaporative rate (LE/R-n) dropped by a factor of four from the non-soil stress to soil water limiting conditions. Maximum half-hourly CO2 uptake was -0.68 mg m(-2) s(-1) and maximum ecosystem exchange was 4.3 g CO2 m(-2) day(-1) in 2004. The 2005 drought growing stage had a maximum CO2 exchange value of only -0.22 mg m(-2) s(-1) and a continuous positive integrated-daily CO2 flux over the entire growing season, i.e. the ecosystem became a net carbon source. Soil respiration was temperature dependent when the soil was under non-limiting soil moisture conditions, but this response declined with soil water stress. Water availability and a high vapor pressure deficit severely limited carbon fixing of this ecosystem; thus, during the growing season, the capacity to fix CO2 was closely related to both timing and frequency of rainfall events. (c) 2007 Published by Elsevier Masson SAS.

Seasonal and interannual variation in water vapor and energy exchange over a typical steppe in Inner Mongolia, China

In this study, we conducted eddy covariance (EC) measurements of water vapor exchange over a typical steppe in a semi-arid area of the Inner Mongolia Plateau, China. Measurement sites were located within a 25-year-old enclosure with a relatively low leaf area index (similar to 1. 5 m(2) m(-2)) and dominated by Leymus chinensis. Energy balance closure was (H + LE) = 17.09 + 0.69 x (Rn - G) (W/m(2); r(2) = 0.95, n = 6596). Precipitation during the two growing seasons of the study period was similar to the long-term average. The peak evapotranspiration in 2004 was 4 mm d(-1), and 3.5 mm d(-1) in 2003. The maximum latent heat flux was higher than the sensible heat flux, and the sensible heat flux dominated the energy budget at midday during the entire growing season in 2003; latent heat flux was the main consumption component for net radiation during the 2004 growing season. During periods of frozen soil in 2003 and 2004, the sensible heat flux was the primary consumption component for net radiation. The soil heat flux component was similar in 2003 and 2004. The decoupling coefficient (between 0.5 and 0.1) indicates that evapotranspiration was strongly controlled by saturation water vapor pressure deficit (VPD) in this grassland. The results of this research suggest that energy exchange and evapotranspiration were controlled by the phenology of the vegetation and soil water content. In addition, the amount and frequency of rainfall significantly affect energy exchange and evapotranspiration upon the Inner Mongolia plateau. (c) 2007 Published by Elsevier B.V.

Energy exchange between the atmosphere and a meadow ecosystem on the Qinghai-Tibetan Plateau

To reveal the potential contribution of grassland ecosystems to climate change, we examined the energy exchange over an alpine Kobresia meadow on the northeastern Qinghai-Tibetan Plateau. The annual pattern of energy exchange showed a clear distinction between periods of frozen soil with the daily mean soil temperature at 5 cm (T-s5 ≤ 0 ° C) and non-frozen soil (T-s5 > 0 ° C). More than 80% of net radiation was converted to sensible heat (H) during the frozen soil period, but H varied considerably with the change in vegetation during the non-frozen soil period. Three different sub-periods were further distinguished for the later period: (1) the pre-growth period with Bowen ratio (β) > 1 was characterized by a high β of 3.0 in average and the rapid increase of net radiation associated with the increases of H, latent heat (LE) and soil heat; (2) during the Growth period when β ≤ 1, the LE was high but H fluxes was low with β changing between 0.3 and 0.4; (3) the post-growth period with average β of 3.6 when H increased again and reached a second maximum around early October. The seasonal pattern suggests that the phenology of the vegetation and the soil water content were the major factors affecting the energy partitioning in the alpine meadow ecosystem. © 2005 Elsevier B.V. All rights reserved.

全信息精细储层预测方法研究与实践-以周清庄油田沙三段油藏为例

With the continuously proceeding of petroleum exploratory development in China, exploratory development becomes more and more difficult. For increasing reserve volume and production, lithologic hydrocarbon reservoir has been the most workable, potential and universality exploration targets. In the past, Dagang Oil Field use the complicated fault reservoir theory as the guide, develop and form a suit of matching construction and instrument in prospecting complicated fault reservoir that reach top of exploration industry in China. But the research of lithologic hydrocarbon reservoir is not much, which affects the exploitation progress of lithologic hydrocarbon reservoir. In this thesis, is object, through the depth study of lithologic deposition in Shasan segment of Zhouqingzhuang Oil Field, a suit of holographic fine reservoir bed forecasting techniques is built up and finally gets following main results: 1. Applying geology, seism, drilling, logging and other information to sensitivity preferences, geological model, inversion and integrated stratum evaluation, realizing the method and flow of refined multi-information stratum forecast. 2. Built up a full three dimensional fine structural interpretation method: in view of r problem of accurately demarcating 90% inclined well, propose a inclined well air space demarcating method, make bed demarcating more exactly; in view of problem of faults demarcating and combination in seismic interpretation, propose a computational method of seismic interference based on wavelet translation, make identify the fault in different level more dependable and reasonable; for exactly identifying structural attitude, propose a velocity modeling method under multi-well restriction, make structural attitude closer to the facts. 3. Built up a high accuracy reservoir bed inversion method: in view of problem in exactly identifying reservoir and nonreservoir with conventional wave impedance inversion method in this place, propose a reservoir log response characteristic analysis and sensible log parameter inversion method. ①analysis log response of reservoir and nonreservoir in region of interest, make definite the most sensible log parameter in identifying reservoir and nonreservoir in this region; ②make sensible log parameter inversion based on wave impedance inversion, to improve inversion accuracy, the thickness of recognizable reservoir bed reach 4-5m. 4. Built up a 4-D reservoir forcasting circuit: in view of difficulty that in lithologic hydrocarbon reservoir making reservoir space characteristic clear by using structural map and reservoir forecasting techniques once only, propose a 4-D reservoir forcasting circuit. In other words, based on development conceptual design, forcast reservoir of different time, namely multiple 3D reservoir forcasting in time queue, each time the accuracy degree of reservoir forcasting is improved since apply the new well material, thereby achieve high quality and highly efficient in exploratory development. During exploratory development lithologic depositin in Shasan segment of Zhouqingzhuang Oil Field, there are thirteen wells get 100% success rate, which sufficiently proves that this suit of method is scientific and effective.