61 resultados para Hydrogen Bond
em Chinese Academy of Sciences Institutional Repositories Grid Portal
Resumo:
Two new chiral liquid crystals of schiff-base type have been synthesized. This series of compounds contain a-chloro acidic ester chain prepared from commercially available L-valine. Both of the compounds exhibit tilted smectic phases; their phase transitions were studied using DSC and polarized optical microscopy; the influence of intramolecular hydrogen bonds on the phase behavior was studied as well.
Resumo:
Two new hydrogen bond induced liquid crystals with 4-butoxy benzoic acid as the proton donor and two chiral substituted stilbazole as the proton acceptor have been synthesized. Their liquid crystal transitions were studied by DSC and optical polarized microscope, the IR spectra of the complexes show the existence of the intermolecular hydrogen bond. The results of DSC and optical polarized microscope show that one of them (4BA-VSZ) has a chiral smectic C phase.
Resumo:
The structure of the title compound, [Co(C12H8N2)(H2O)(4)]-(NO3)(2), consists of tetraaqua(1,10- phenanthroline)cobalt(II) cations and nitrate anions. The Co atom is located on a twofold rotation axis and is coordinated by the two N atoms of a 1,10-phenanthroline ligand and four O atoms of water molecules. The cations and anions are linked by hydrogen-bond interactions into a three-dimensional supramolecular network.
Resumo:
Selectin-ligand interactions are crucial to such biological processes as inflammatory cascade or tumor metastasis. How transient formation and dissociation of selectin-ligand bonds in blood flow are coupled to molecular conformation at atomic level, however, has not been well understood. In this study, steered molecular dynamics (SMD) simulations were used to elucidate the intramolecular and intermolecular conformational evolutions involved in forced dissociation of three selectin-ligand systems: the construct consisting of P-selectin lectin (Lec) and epidermal growth factor (EGF)-like domains (P-LE) interacting with synthesized sulfoglycopeptide or SGP-3, P-LE with sialyl Lewis X (sLeX), and E-LE with sLeX. SMD simulations were based on newly built-up force field parameters including carbohydrate units and sulfated tyrosine(s) using an analogy approach. The simulations demonstrated that the complex dissociation was coupled to the molecular extension. While the intramolecular unraveling in P-LESGP-3 system mainly resulted from the destroy of the two anti-parallel sheets of EGF domain and the breakage of hydrogen-bond cluster at the Lec-EGF interface, the intermolecular dissociation was mainly determined by separation of fucose (FUC) from Ca2+ ion in all three systems. Conformational changes during forced dissociations depended on pulling velocities and forces, as well as on how the force was applied. This work provides an insight into better understanding of conformational changes and adhesive functionality of selectin-ligand interactions under external forces.
Resumo:
The polar headgroup of dipalmitoylphosphatidylcholine (DPPC) molecule both in gas phase and aqueous Solution is investigated by the hybrid quantum mechanical/molecular mechanical (QM/MM) method, in which the polar head of DPPC molecule and the bound water molecules are treated with density functional theory (DFT), while the apolar hydrocarbon chain of DPPC molecule is treated with MM method. It is demonstrated that the hybrid QM/MM method is both accurate and efficient to describe the conformations of DPPC headgroup. Folded structures of headgroup are found in gas phase calculations. In this work, both monohydration and polyhydration phenomena are investigated. In monohydration, different water association sites are studied. Both the hydration energy and the quantum properties of DPPC and water molecules are calculated at the DFT level of theory after geometry optimization. The binding force of monohydration is estimated by using the scan method. In polyhydration, more extended conformations are found and hydration energies in different polyhydration styles are estimated. (C) 2008 Elsevier Inc. All rights reserved.
Resumo:
在摩尔分数组成x(BaO),r(Ga2O),r(GeO2)为0.20,0.15,0.65的玻璃中,分别以摩尔分数0.05,0.10.0.15和0.20的BaF2替代BaO,研究了氟化物对玻璃折射率和光吸收性质的影响。结果表明,在玻璃中加入氟化物.玻璃折射率和色散降低,玻璃的紫外吸收边向短波侧迁移,而红外吸收边无明显变化。不含氟化物的氧化物玻璃中含有大量的OH基.这些OH基在2.24μm、2.97μm和4.23μm附近引起光吸收.在含氟化物的玻璃中,2.24μm的吸收峰消失,而2.97μm和4.23μm附近
Resumo:
本文以葡甘聚糖为试材,运用分子模拟同仪器分析相结合的手段,预测了葡甘聚糖分子链的高级结构,分析了无机分子对其结构、性能的影响,探讨了葡甘聚糖与卡拉胶微观作用机理。 主要研究内容与结果如下: 1. 葡甘聚糖单链高级结构的预测 利用Hyperchem7.0、VM2.0分子结构计算软件采用分子动力学和分子力学的方法,以真空中葡甘聚糖单链为研究模型,研究了聚合度、取代基对动态构象的影响及影响链构象的作用力。首次提出了KGM链的动态模型,得到了以下结果:聚合度影响其链形态和稳定性,对于高聚合度的魔芋葡甘聚糖来说,其链呈现无规卷曲状态且稳定性下降,在整个动态运动过程中KGM链脱乙酰基前后都呈现无规卷曲状态,而且其伸展和卷曲的变化是周期性的,表现出了很好的柔性,说明乙酰基不是影响其链形态的主要因素,二面角能和静电作用是真空中影响单链构象的主要的键合作用力和非键合作用力,但是乙酰基对氢键作用的影响较大。 2. 无机分子对葡甘聚糖溶液体系结构性能影响的研究 利用Hyperchem7.0分子结构计算软件,采用分子动力学及红外光谱、核磁共振等技术,对无机分子对葡甘聚糖体系的影响进行分析,很好的解释了性能变化的结构原因,结合以往的研究及参考文献得出以下结论:KGM在碱性条件下由于化学作用乙酰基的脱除分子间氢键作用的加强提高了凝胶强度,分子间氢键的主要作用位点是葡萄糖 的O(6)与甘露糖的O(2)之间;硼与KGM形成的分子内和分子间配合作用及分子间作用力氢键的增强是KGM特性粘度和致密性提高的主要原因,分子间型配位反应发生在葡萄糖和甘露糖两个糖环之间的几率最大;加入尿素后,表现为宏观性能的下降,葡甘聚糖氢键网络被破坏,氢键的作用位点由甘露糖的O(2)、O(3)变为O(4),葡萄糖的O(3)、O(6)变为O(1)、O(2)。 3. 葡甘聚糖与卡拉胶共混作用的研究 利用Hyperchem7.0分子结构计算软件运用分子动力学方法、DSC、红外光谱技术,研究了葡甘聚糖与卡拉胶的微观结构及作用过程,揭示了性能变化的结构原因和分子之间的作用位点。得出了以下结论:葡甘聚糖同卡拉胶共混后通过分子间氢键作用形成了强度高、弹性好的热可逆凝胶。其凝胶强度与单一胶相比较,凝胶特性得到了很大的改善。通过红外光谱可以发现形成复合溶胶后化学基团没有发生本质上的改变,但是氢键缔合作用增强;通过DSC分析可以发现仅出现1个吸热峰,两种生物大分子达到了相容的结果,经过分子动力学模拟表明,与单一体系比较,葡甘聚糖与卡拉胶共混时稳定性提高,分子间氢键作用力明显增强,主要的作用位点是葡甘聚糖的上甘露糖的O(2)、O(4)、O(6)、乙酰基位置及卡拉胶上糖环上的 O(6)、硫酸基。
Resumo:
用分子动力学模拟方法研究甲烷水合物热激法分解,系统地研究注入340 K液态水的结构Ⅰ型甲烷水合物的分解机理.模拟显示水合物表层水分子与高温液态水分子接触获得热能,分子运动激烈,摆脱水分子间的氢键束缚,笼状结构被破坏.甲烷分子获得热能从笼中挣脱,向外体系扩散.热能通过分子碰撞从外层传递给内层水分子,水合物逐层分解.对比注入277K液态水体系模拟结果,得出热激法促进水合物分解.
Thermal stimulation on dissociation of methane hydrate was investigated with molecular dynamics simulation. The dissociation mechanism of methane hydrate with structure Ⅰ was investigated systematically by injecting heated, liquid water of 340 K. The results showed that when the water molecules on hydrate surface are made in contact with high temperature liquid water, they obtain heat energy, and with the obtained energy the water molecules move intensively, breaking the hydrogen bond between water molecules, and destroy the clathrate structure. In addition, methane molecules that have obtained heat energy, break away from the clathrate and diffuse into liquid. Due to heat energy being transferred into inside layer from outside layer through collision between molecules, the hydrate is dissociated layer by layer. Comparing the effects of liquid water with different temperatures of 340 and 277 K on hydrate dissociation, it is concluded that the thermal stimulation promotes dissociation of the hydrate.
Resumo:
手性胺是合成天然产物和手性药物的重要中间体,亚胺和烯胺的不对称催化还原是制备手性胺最直接有效的方式之一。手性有机小分子催化的亚胺不对称还原已取得了可喜的进展,但到目前为止,有机小分子催化的烯胺不对称还原,尤其是环状烯胺的不对称还原还少有报道。 本研究从手性叔丁基亚磺酰胺出发,设计并合成了一系列含有叔丁基亚磺酰基的新型脲类及硫脲类催化剂,并将其用于催化三氯硅烷对烯胺的不对称还原,尤其是1, 4-二氢吡啶酯类环状烯胺的不对称还原。通过对催化反应条件的优化,发现当添加1eq H2O时,反应收率和对映选择性明显提高,获得高达99% 的收率和88% ee,同时也取得了很好的非对映选择性(dr = 8:92)。首次实现了三氯硅烷对1, 4-二氢吡啶酯类环状烯胺的高立体选择性还原。 通过机理方面的研究,我们推测反应过程中可能是:首先,底物1, 4-二氢吡啶酯与催化剂形成氢键而被活化,当加入添加剂后,添加剂与三氯硅烷反应释放出一个质子,然后受活化的1, 4-二氢吡啶酯捕获该质子转变成更活泼的亚胺正离子的中间体。随后,在催化剂上的手性硫氧的活化下,三氯硅烷的负氢加成到受活化的亚胺正离子的中间体上,最后生成比较有利的反式产物1, 4, 5, 6-四氢吡啶乙酯。 Calalytic enantioselective reduction of imines and enamines represents one of the most straightforward and efficient methods for the preparation of chiral amines, which is an important class of intermediates for the synthesis of natural products and chiral drugs. Significant progresses have been made in organocatalytic enantioselective reduction of imines. However, asymmetric reduction of enamines, especially of cyclic enamines catalyzed by small organocatalysts has scarcely been reported. In this study, starting from chiral tert-butanesulfinamide, a series of structurally simple tert-butanesulfinyl urea and thiourea organocatalysts were developed and employed in asymmetric reduction of enamines by triclorosilane, particularly in the reduction of cyclic enamines such as Hantzsch 1, 4-dihydropyridines. During the optimization of reaction condictions, we found that the addition of one equivalent of H2O could significantly improve the yields and enatioselectivities. Under optimal condictions, 99% yield, up to 88% ee, and 8:92 diastereomeric ratio were obtained. Thus, we have for the first time realized the highly stereoselective reduction of Hantzsch 1, 4-dihydropyridines catalyzed by triclorosilane. As for the mechanism, we speculate that the Hantzsch 1, 4-dihydropyridine was firstly engaged with the catalyst through hydrogen bond. The proton released from the reaction of the additive and triclorosilane next added to one of the C=C bond to make an active iminium intermediate, which was then attacked by the nucleophlic hydrogen of HSiCl3 activated by the Lewis basic sulfinyl function of the catalyst to provide superior trans-1, 4, 5, 6-tetrahydropyridine products.
Resumo:
Mannich反应是有机化学中最重要的碳-碳键形成反应,其产物是合成手性胺的通用中间体。间接Mannich反应使用不稳定的预制烯醇等当体,以未修饰的酮为给体的直接方法将增强Mannich反应的效率。针对低活性苯乙酮、氨甲酸酯参与的直接Mannich反应,研究工作将更具挑战性。 在前期实验中,我们发现Lewis酸-NbCl5可高效催化苯乙酮、芳香醛、芳香胺三组分直接Mannich反应,反应在环境温度下进行,高收率获得Mannich碱。这是以苯乙酮参与的Mannich反应中,实现催化量Lewis酸催化的首次报道。该方法高效且操作简单。但就底物而言,对易去保护、低活性的氨甲酸酯类底物收率较低。我们设想Brønst酸可解决此类底物问题。令人高兴的是,杂多酸可高效催化芳香酮、芳香醛、氨甲酸酯三组分直接Mannich反应,反应在环境温度下进行,高收率获得N-保护的β-氨基酮。该方法底物范围广泛,普适性强且催化剂便宜。 基于杂多酸在苯乙酮、氨甲酸酯为底物直接Mannich反应中的高效性,我们设想杂多酸与功能化的手性有机小分子-手性伯胺组装可解决催化剂回收问题,同时实现不对称催化。实验结果表明,非共价键固载手性伯胺不能有效催化苯乙酮为底物的直接Mannich反应,无论是对映选择性还是收率均较低。随后,我们以丙二酸酯及α-氨基砜为底物,以增强底物活性,同时绕开亚胺的不稳定性。辛可宁伯胺以氢键双活化底物,有效催化原位产生氨甲酸酯类亚胺与丙二酸酯的Mannich反应,高收率获得Mannich碱,ee值中等。 我们采用逐步解决问题的策略解决Mannich反应中的部分问题并在Lewis酸催化、Brønst酸催化、非共价键固载手性伯胺催化及手性伯胺氢键催化的直接Mannich反应中做出了有益探索。 The Mannich reactions are among the most fundamental carbon-carbon bond forming reactions in organic chemistry, and the reaction products are versatile intermediates in the synthesis of chiral amines. The indirect Mannich reaction uses preformed enolate equivalents. However the preformed enolates are unstable. Thus, a direct methodology based on unmodified ketone donors would enhance the efficiency of the Mannich reaction. Especially researches for the directed Mannich reactions of acetophenone, carbamate, which own lower activities, will be more challengeable. In the initial experiments, we found an efficient Lewis acid-NbCl5 which could catalyze three-component Mannich-type reaction of acetophenone, aromatic aldehydes and aromatic amines at ambient temperature in high yields. This is the first report that use catalytic amount of Lewis acid in the Mannich reactions of .acetophenone. The method reported is not only simple to operate but also efficient. However, as far as amines are concerned, the substrates of carbamates which can be deprotected more easily and less reactive than amines give low yields. We envisaged that Brønsted acid would resolve this problem. Pleasingly, heteropoly acids (HPA) efficiently catalyzed one-pot three-component Mannich reactions of aryl aldehydes, aryl ketones, and carbamates at ambient temperature and afforded the corresponding N-protected β-amino ketones in good to excellent yields. This method provides a novel and improved modification of three-component Mannich reactions in terms of a wide scope of aldehydes, ketones and carbamates, economic viability. Based on the high efficiency of heteropoly acids in the Mannich reaction of acetophenone and carbamates, we envisaged that if HPA were combined with functionalized chiral organocatalysts–chiral primary amines the assemblies may be able to act as recoverable asymmetric organocatalysts. The results of exprimentals showed that noncovalently supported heterogeneous chiral primary amine couldn’t effectively catalyze the Mannich reactions which own two the substrate of acetophenone regardless of enantioselectivity and yield. Then, we employed malonates and α-amido sulfones as substrates to enhance reactivity of substrates and circumvent the instability of imines. A moderately enantioselective and highly yield Mannich reaction with in situ generation of carbamate-protected imines from stable α-amido sulfones catalyzed by cinchonine primary amine catalyst was developed. It is noteworthy that cinchonine primary amine can dual activate substrates through H-bond activation and thus promote the reaction. We applied step-by-step-strategy to resolve some problems in the Mannich reactions and did some instructive explorations in Lewis acid catalysis, Brønst acid catalysis, noncovalently supported heterogeneous chiral primary amine catalysis and chiral primary amine as hydrogen-bond catalysis.