Genome-wide SNP and haplotype analyses reveal a rich history underlying dog domestication

Advances in genome technology have facilitated a new understanding of the historical and genetic processes crucial to rapid phenotypic evolution under domestication(1,2). To understand the process of dog diversification better, we conducted an extensive genome-wide survey of more than 48,000 single nucleotide polymorphisms in dogs and their wild progenitor, the grey wolf. Here we show that dog breeds share a higher proportion of multi-locus haplotypes unique to grey wolves from the Middle East, indicating that they are a dominant source of genetic diversity for dogs rather than wolves from east Asia, as suggested by mitochondrial DNA sequence data(3). Furthermore, we find a surprising correspondence between genetic and phenotypic/functional breed groupings but there are exceptions that suggest phenotypic diversification depended in part on the repeated crossing of individuals with novel phenotypes. Our results show that Middle Eastern wolves were a critical source of genome diversity, although interbreeding with local wolf populations clearly occurred elsewhere in the early history of specific lineages. More recently, the evolution of modern dog breeds seems to have been an iterative process that drew on a limited genetic toolkit to create remarkable phenotypic diversity.

River mouth bar formation, riverbed aggradation and channel migration in the modern Huanghe (Yellow) River delta, China

This paper addresses the recent (1970s-1990s) processes of river mouth bar formation, riverbed aggradation and distributary migration in the Huanghe River mouth area, in the light of station-based monitoring, field measurements and remote sensing interpretation. The results show that the morphological changes of the river mouth bar have been closely associated with the largely reduced fluvial discharge and sediment load. Landforrn development such as bar progradation occurred in two phases, i.e. before and after 1989, which correspond to faster and lower bar growth rates, respectively. Fast riverbed aggradation in the mouth channel was strongly related to river mouth bar progradation. During 1976-1996, about 2.8% of the total sediment loads were deposited in the river channel on the upper to middle delta. Therefore, the river water level rose by a few meters from 1984 to 1996. The frequent distributary channel migration, which switched the radial channel pattern into the SE-directed pattern in the mid-1980s, was linked with mouth bar formation. Marine conditions also constrain seaward bar progradation. Furthermore, the history of river mouth bar formation reflects human impacts, such as dredging and dyking in order to stabilize the coastal area. (c) 2005 Elsevier B.V. All rights reserved.

济阳-昌潍坳陷火成岩油气藏体系形成机理和分布规律研究

Jiyang & Changwei depressions are two neighboring depressions in Bahai Bay Basin, the famous oil rich basin in East China. The exploration activities in the past 40 years has proved that, within the basins, there exists not only plentiful sandstone hydrocarbon reservoirs (conventional), but also abundant special reservoirs as igneous rock, mudstone and conglomerate ones which have been knowing as the unconventional in the past, and with the prospecting activity is getting more and more detailed, the unconventional reservoirs are also getting more and more important for further resources, among which, the igneous lithological reservoir be of significance as a new research and exploration area. The purpose of this paper is, with the historical researches and data as base, the System Theory, Practice Theory and Modern Comprehensive Petroleum Geology Theory as guide, the theoretical and practice break through as the goal, and the existing problems in the past as the break through direction, to explore and establish a valid reservoir formation and distribution models for igneous strata in the profile of the eastern faulted basins. After investigating the distribution of the igneous rocks and review the history of the igneous rocks reservoirs in basins, the author focused on the following issues and correspondingly the following progresses have been made: 1.Come to a new basin evolution and structure model named "Combined-Basin-bodies Model" for Jiyang even Eastern faulted basins based on the study on the origin and evolution of Jiyang & Changwei basins, depending on this model, every faulted basin in the Bo-hai Bay Basin is consisted of three Basin-Bodies including the Lower (Mesozoic), Middle (Early Tertiary) and the Upper (Late Tertiary) Bodies, each evolved in different geo-stress setting and with different basin trend, shape and igneous-sedimentary buildings system, and from this one to next one, the basin experienced a kind of process named "shape changing" and "Style changing". 2. Supposed a serious of new realizations as follows (1) There were "multi-level magma sources" including Upper mantel and the Lower, Middle and even the Upper Shell magma Chambers in the historical Magma Processes in the basins; (2) There were "multi-magma accessing or pass" from the first level (Mantel faults) to the second, third and fourth levels (that is the different levels of fault in the basin sediment strata) worked in the geo-historical and magma processes; (3) Three tectonic magma cycles and more periods have been recognized those are matched with the "Basin -body-Model" and (4)The geo-historical magma processes were non-homogeneous in time and space scale and so the magma rocks distributed in "zones" or "belts". 3. The study of magma process's effect on basin petroleum conditions have been made and the following new conclusions were reached: (1) the eruptive rocks were tend to be matched with the "caped source rock", and the magma process were favorable to the maturing of the source rocks. (2) The magma process were fruitful to the accumulation of the non-hydrocarbon reservoirs however a over magma process may damage the grade of resource rock; (3) Eruptive activity provided a fruitful environment for the formation of such new reservoir rocks as "co-eruptive turbidity sandstones" and "thermal water carbonate rocks" and the intrusive process can lead to the origin of "metamorphism rock reservoir"; (4) even if the intrusive process may cause the cap rock broken, the late Tertiary intrusive rocks may indeed provide the lateral seal and act as the cap rock locally even regionally. All above progresses are valuable for reconstructing the magma-sedimentary process history and enriching the theory system of modem petroleum geology. 4. A systematic classification system has been provided and the dominating factors for the origin and distribution of igneous rock reservoirs have been worked out based on the systematic case studies, which are as follows: (1) The classification is given based on multi-factors as the origin type, litho-phase, type of reservoir pore, reservoir ability etc., (2) Each type of reservoir was characterized in a detailed way; (3) There are 7 factors dominated the intrusive reservoir's characteristics including depth of intrusion, litho-facies of surrounding rocks, thickness of intrusive rock, intrusive facies, frequency and size of the working faults, shape and tectonic deformation of rock, erosion strength of the rock and the time of the intrusion ect., in the contrast, 4 factors are for eruptive rocks as volcanic facies, frequency and size of the working faults, strength of erosion and the thermal water processing. 5. Several new concept including "reservoir litho-facies", "composite-volcanic facies" and "reservoir system" ect. Were suggested, based on which the following models were established: (1) A seven reservoir belts model for a intrusive unit profile and further more, (2) a three layers cubic model consisted of three layer as "metamorphic roe layer", "marginal layer" and "the core"; (3) A five zones vertical reservoir sequence model consisted of five litho-facies named A, B, C, D and E for a original lava unit and furthermore three models respectively for a erosion, subsidence and faulted lava unit; (4) A composite volcanic face model for a lava cone or a composite cone that is consisted of three facies as "crater and nearby face", "middle slope" and "far slope", among which, the middle slope face is the most potential reservoir area and producible for oil & gas. 6. The concept of "igneous reservoir" was redefined as the igneous, and then a new concept of "igneous reservoir system" was supposed which means the reservoir system consisted of igneous and associated non-igneous reservoirs, with non-hydrocarbon reservoir included. 7. The origin and distribution of igneous reservoir system were probed and generalized for the exploration applications, and origin models of the main reservoir sub-systems have been established including those of igneous, related non-igneous and non-hydrocarbon. For intrusive rocks, two reservoir formation models have been suggested, one is called "Original or Primary Model", and the another one is "Secondary Model"; Similarly, the eruptive rock reservoirs were divided in three types including "Highly Produced", "Moderately Produced" and "Lowly Produced" and accordingly their formation models were given off; the related non-igneous reservoir system was considered combination of eight reservoirs, among which some ones like the Above Anticline Trap are highly produced; Also, the non-hydrocarbon. Trap system including five kinds of traps was discussed. 8. The concept models for four reservoir systems were suggested, which include the intrusive system consisted of 7 kinds of traps, the land eruptive system with 6 traps, the under water eruptive system including 6 kinds of traps and the non-hydrocarbon system combined by 5 kinds of traps. In this part, the techniques for exploration of igneous reservoir system were also generalized and probed, and based on which and the geological progresses of this paper, the potential resources and distributions of every reservoir system was evaluated and about 186 millions of reserves and eight most potential non-hydrocarbon areas were predicted and outlined. The author believe that the igneous reservoir system is a very important exploration area and its study is only in its early stage, the framework of this paper should be filled with more detailed studies, and only along way, the exploration of igneous reservoir system can go into it's really effective stage.

孤南-三合村洼陷含油气系统研究

The development petroleum geology has made people from studying and studying and predicting in statically and respectively the pool-forming conditions of an area such as oil source bed, reservoir, overlying formation, migration, trap and preservation, etc. to regarding these conditions as well as roles of generation, reservation and accumulation as an integrated dynamic evolution development system to do study .Meanwhile apply various simulating means to try to predict from quantitative angle. Undoubtedly, the solution of these questions will accumulate exploration process, cut down exploration cost and obtain remarkable economic and social benefits. This paper which take sedimentology ,structural geology and petroleum geology as guides and take petroleum system theory as nucleus and carry out study thinking of beginning with static factor and integration of point and face as well as regarding dynamic state factor as factor and apply study methods of integration of geology, Lab research and numerical modeling proceed integrated dissect and systematic analysis to GuNan-SanHeCun depression. Also apply methods of integration of sequence stratigraphy, biostratigraphy, petrostratigraphy and seismic data to found the time-contour stratigraphic framework and reveal time-space distribution of depositional system and meantime clarify oil-source bed, reservoir and overlying distribution regular patterns. Also use basin analysis means to study precisely the depositional history, packed sequences and evolution. Meanwhile analyze systematically and totally the fracture sequence and fault quality and fault feature, study the structural form, activity JiCi and time-space juxtaposion as well as roles of fault in migration and accumulation of oil and gas of different rank and different quality fault. Simultaneously, utilize seismic, log, analysis testing data and reservoir geology theory to do systematic study and prediction to GuNan-SanHeCun reservoir, study the reservoir types macroscopic distribution and major controlling factors, reservoir rock, filler and porosity structural features as well as distribution of reservoir physical property in 3D space and do comprehensive study and prediction to major controlling and influential factors of reservoir. Furthermore, develop deepingly organic geochemistry comprehensive study, emphasis on two overlaps of oil source rock (ESI, ES3) organic geochemistry features, including types, maturity and spatial variations of organic matter to predict their source potential .Also apply biological marks to proceed oil-to-source correlation ,thereby establish bases for distribution of petroleum system. This study recover the oil generation history of oil source rocks, evaluate source and hydrocarbon discharge potential ,infer pool-forming stages and point out the accumulation direction as well as discover the forming relations of mature oil-source rock and oil reservoir and develop research to study dynamic features of petroleum system. Meanwhile use systematic view, integrate every feature and role of pool forming and the evolution history and pool-forming history, thereby lead people from static conditions such as oil source bed, reservoir, overlying formation, migration, trap and preservation to dynamically analyzing pool-forming process. Also divide GuNan-SanHeCun depression into two second petroleum system, firstly propose to divide second petroleum system according to fluid tress, structural axis and larger faults of cutting depression, and divide lower part of petroleum system into five secondary systems. Meanwhile establish layer analysis and quantitative prediction model of petroleum model, and do quantitative prediction to secondary petroleum system.